RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 Q6ZVH6 145 aa16.13■□□□□ 0.17
SHMT1-207ENST00000580002 TLX1NBP0CAT3 122 aa16.12■□□□□ 0.17
SHMT1-207ENST00000580002 C9orf129Q5T035 196 aaKnown RBP16.12■□□□□ 0.17
SHMT1-207ENST00000580002 PTTG1IPP53801 180 aa16.11■□□□□ 0.17
SHMT1-207ENST00000580002 PRR3P79522 188 aaKnown RBP16.1■□□□□ 0.17
SHMT1-207ENST00000580002 IFITM1P13164 125 aa16.1■□□□□ 0.17
SHMT1-207ENST00000580002 A0A096LNI7 61 aa16.09■□□□□ 0.17
SHMT1-207ENST00000580002 LOC107984640A0A0U1RRK4 108 aa16.09■□□□□ 0.17
SHMT1-207ENST00000580002 SDIM1Q6ZPB5 146 aa16.09■□□□□ 0.17
SHMT1-207ENST00000580002 CHTF8P0CG12 524 aa16.08■□□□□ 0.17
SHMT1-207ENST00000580002 IGLV5-52A0A0A0MRZ9 124 aa16.08■□□□□ 0.16
SHMT1-207ENST00000580002 IGKV2-24A0A0C4DH68 120 aa16.07■□□□□ 0.16
SHMT1-207ENST00000580002 K7ERJ3 54 aa16.07■□□□□ 0.16
SHMT1-207ENST00000580002 LOC107984156A0A0G2JMH3 177 aa16.06■□□□□ 0.16
SHMT1-207ENST00000580002 PANO1I0J062 215 aa16.06■□□□□ 0.16
SHMT1-207ENST00000580002 ARL17AQ8IVW1 177 aa16.06■□□□□ 0.16
SHMT1-207ENST00000580002 FAM168BA1KXE4 195 aa16.05■□□□□ 0.16
SHMT1-207ENST00000580002 NHP2Q9NX24 153 aaKnown RBP16.05■□□□□ 0.16
SHMT1-207ENST00000580002 CFC1BP0CG36 223 aa16.05■□□□□ 0.16
SHMT1-207ENST00000580002 CFC1P0CG37 223 aa16.05■□□□□ 0.16
SHMT1-207ENST00000580002 RPL24P83731 157 aaKnown RBP16.05■□□□□ 0.16
SHMT1-207ENST00000580002 IGKV2-28A0A075B6P5 120 aa16.03■□□□□ 0.16
SHMT1-207ENST00000580002 IGKV2D-28P01615 120 aa16.03■□□□□ 0.16
SHMT1-207ENST00000580002 KRTAP7-1Q8IUC3 87 aa16.03■□□□□ 0.16
SHMT1-207ENST00000580002 SERTAD4-AS1Q5TG53 156 aa16.02■□□□□ 0.15
SHMT1-207ENST00000580002 C16orf90A8MZG2 172 aa16■□□□□ 0.15
SHMT1-207ENST00000580002 LINC00336Q6ZUF6 198 aa15.99■□□□□ 0.15
SHMT1-207ENST00000580002 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP15.99■□□□□ 0.15
SHMT1-207ENST00000580002 NCR3O14931 201 aa15.98■□□□□ 0.15
SHMT1-207ENST00000580002 PKHD1P08F94 4074 aa15.98■□□□□ 0.15
SHMT1-207ENST00000580002 DNAH8Q96JB1 4490 aa15.98■□□□□ 0.15
SHMT1-207ENST00000580002 VPREB1P12018 145 aa15.98■□□□□ 0.15
SHMT1-207ENST00000580002 PPDPFQ9H3Y8 114 aa15.98■□□□□ 0.15
SHMT1-207ENST00000580002 A0A1W2PNN7 141 aa15.97■□□□□ 0.15
SHMT1-207ENST00000580002 LINC00337Q8N6G1 96 aa15.97■□□□□ 0.15
SHMT1-207ENST00000580002 COPS9Q8WXC6 57 aa15.97■□□□□ 0.15
SHMT1-207ENST00000580002 A0A1B0GVY2 172 aa15.96■□□□□ 0.15
SHMT1-207ENST00000580002 COL5A1-AS1Q5SY13 56 aa15.96■□□□□ 0.15
SHMT1-207ENST00000580002 TMEM238LA0A1B0GVL6 79 aa15.95■□□□□ 0.14
SHMT1-207ENST00000580002 A0A1B0GWB2 263 aa15.95■□□□□ 0.14
SHMT1-207ENST00000580002 A6NJY4 79 aa15.95■□□□□ 0.14
SHMT1-207ENST00000580002 RAB37Q96AX2 223 aa15.95■□□□□ 0.14
SHMT1-207ENST00000580002 PGPEP1Q9NXJ5 209 aa15.95■□□□□ 0.14
SHMT1-207ENST00000580002 FAM19A5Q7Z5A7 132 aaPredicted RBP15.94■□□□□ 0.14
SHMT1-207ENST00000580002 NDUFC2O95298 119 aa15.92■□□□□ 0.14
SHMT1-207ENST00000580002 KRTAP10-1P60331 282 aa15.92■□□□□ 0.14
SHMT1-207ENST00000580002 DYNC1H1Q14204 4646 aaKnown RBP15.92■□□□□ 0.14
SHMT1-207ENST00000580002 A6NDN8 102 aa15.92■□□□□ 0.14
SHMT1-207ENST00000580002 FAM30AQ9NZY2 134 aa15.91■□□□□ 0.14
SHMT1-207ENST00000580002 LRP1BQ9NZR2 4599 aa15.9■□□□□ 0.14
SHMT1-207ENST00000580002 A0A0B4J2C4 111 aa15.9■□□□□ 0.14
SHMT1-207ENST00000580002 H7C2G1 150 aa15.9■□□□□ 0.14
SHMT1-207ENST00000580002 NAA38Q9BRA0 125 aaKnown RBP15.9■□□□□ 0.14
SHMT1-207ENST00000580002 SPACA4Q8TDM5 124 aa15.89■□□□□ 0.13
SHMT1-207ENST00000580002 GAGE10A6NGK3 116 aa15.88■□□□□ 0.13
SHMT1-207ENST00000580002 TAX1BP3O14907 124 aa15.88■□□□□ 0.13
SHMT1-207ENST00000580002 DPH3Q96FX2 82 aa15.88■□□□□ 0.13
SHMT1-207ENST00000580002 PRO1854Q9UHT4 67 aa15.88■□□□□ 0.13
SHMT1-207ENST00000580002 PLA2G2DQ9UNK4 145 aa15.88■□□□□ 0.13
SHMT1-207ENST00000580002 OR13C6PQ8NH95 151 aa15.87■□□□□ 0.13
SHMT1-207ENST00000580002 RPL13AP40429 203 aaKnown RBP15.87■□□□□ 0.13
SHMT1-207ENST00000580002 C22orf24Q9Y442 160 aa15.87■□□□□ 0.13
SHMT1-207ENST00000580002 C7orf33Q8WU49 177 aa15.85■□□□□ 0.13
SHMT1-207ENST00000580002 A0A087WYN8 130 aa15.83■□□□□ 0.12
SHMT1-207ENST00000580002 TSPAN13O95857 204 aa15.83■□□□□ 0.12
SHMT1-207ENST00000580002 NKAPP1Q8N9T2 125 aa15.83■□□□□ 0.12
SHMT1-207ENST00000580002 IGLV5-37A0A075B6J1 123 aa15.82■□□□□ 0.12
SHMT1-207ENST00000580002 TRBV10-3A0A0K0K1G6 114 aa15.82■□□□□ 0.12
SHMT1-207ENST00000580002 M0R378 163 aa15.82■□□□□ 0.12
SHMT1-207ENST00000580002 HAMPP81172 84 aa15.82■□□□□ 0.12
SHMT1-207ENST00000580002 TRAV13-2A0A0B4J235 113 aa15.82■□□□□ 0.12
SHMT1-207ENST00000580002 PKIGQ9Y2B9 76 aa15.82■□□□□ 0.12
SHMT1-207ENST00000580002 A0A1B0GV90 55 aa15.81■□□□□ 0.12
SHMT1-207ENST00000580002 RPL37AP8A6NKH3 93 aa15.81■□□□□ 0.12
SHMT1-207ENST00000580002 PHF5AQ7RTV0 110 aaKnown RBP15.81■□□□□ 0.12
SHMT1-207ENST00000580002 LINC00167Q96N53 147 aa15.81■□□□□ 0.12
SHMT1-207ENST00000580002 LINC00474Q9P2X8 69 aa15.81■□□□□ 0.12
SHMT1-207ENST00000580002 TRBV10-2A0A0K0K1G8 114 aa15.8■□□□□ 0.12
SHMT1-207ENST00000580002 M0QXV9 152 aa15.8■□□□□ 0.12
SHMT1-207ENST00000580002 S100A7L2Q5SY68 101 aa15.8■□□□□ 0.12
SHMT1-207ENST00000580002 IGLV6-57P01721 117 aa15.79■□□□□ 0.12
SHMT1-207ENST00000580002 KRTAP11-1Q8IUC1 163 aa15.79■□□□□ 0.12
SHMT1-207ENST00000580002 MRPL55Q7Z7F7 128 aaKnown RBP15.77■□□□□ 0.12
SHMT1-207ENST00000580002 SMIM11BQ8TCY0 68 aa15.77■□□□□ 0.12
SHMT1-207ENST00000580002 Q1RN00 199 aa15.76■□□□□ 0.11
SHMT1-207ENST00000580002 H3BUT2 72 aa15.75■□□□□ 0.11
SHMT1-207ENST00000580002 TMEM126AQ9H061 195 aa15.75■□□□□ 0.11
SHMT1-207ENST00000580002 Q6ZSA8 131 aa15.75■□□□□ 0.11
SHMT1-207ENST00000580002 C9orf118A6NHY6 69 aa15.74■□□□□ 0.11
SHMT1-207ENST00000580002 EPM2AB3EWF7 344 aa15.74■□□□□ 0.11
SHMT1-207ENST00000580002 PLAC8Q9NZF1 115 aa15.73■□□□□ 0.11
SHMT1-207ENST00000580002 CIRBP-AS1Q8TBR5 109 aa15.72■□□□□ 0.11
SHMT1-207ENST00000580002 IGLV1-50A0A075B6I6 118 aa15.72■□□□□ 0.11
SHMT1-207ENST00000580002 TRIAP1O43715 76 aa15.71■□□□□ 0.11
SHMT1-207ENST00000580002 SCXQ7RTU7 201 aa15.7■□□□□ 0.1
SHMT1-207ENST00000580002 APOBP04114 4563 aaKnown RBP15.68■□□□□ 0.1
SHMT1-207ENST00000580002 TRAV23DV6A0A075B6W5 121 aa15.67■□□□□ 0.1
SHMT1-207ENST00000580002 RPL28P46779 137 aaKnown RBP15.67■□□□□ 0.1
SHMT1-207ENST00000580002 PSMB2P49721 201 aa15.67■□□□□ 0.1
SHMT1-207ENST00000580002 C6orf99Q4VX62 202 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms