RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 LINC00612Q8N6U2 182 aa6.95□□□□□ -1.3
SMG6-213ENST00000573166 LOC107984640A0A0U1RRK4 108 aa6.95□□□□□ -1.3
SMG6-213ENST00000573166 A0A1B0GX51 115 aa6.95□□□□□ -1.3
SMG6-213ENST00000573166 DEFB105AQ8NG35 78 aa6.95□□□□□ -1.3
SMG6-213ENST00000573166 LINC00308Q8TCZ7 52 aa6.95□□□□□ -1.3
SMG6-213ENST00000573166 IGKV3D-7A0A0C4DH55 119 aa6.95□□□□□ -1.3
SMG6-213ENST00000573166 NDUFC2O95298 119 aa6.95□□□□□ -1.3
SMG6-213ENST00000573166 LINC00643Q86TS7 51 aa6.95□□□□□ -1.3
SMG6-213ENST00000573166 C9orf116Q5BN46 136 aaPredicted RBP6.94□□□□□ -1.3
SMG6-213ENST00000573166 JMJD7-PLA2G4BH0Y9G9 81 aa6.94□□□□□ -1.3
SMG6-213ENST00000573166 BRK1Q8WUW1 75 aa6.94□□□□□ -1.3
SMG6-213ENST00000573166 ZNF575Q86XF7 245 aa6.94□□□□□ -1.3
SMG6-213ENST00000573166 DIRC1Q969H9 104 aa6.94□□□□□ -1.3
SMG6-213ENST00000573166 XGP55808 180 aa6.93□□□□□ -1.3
SMG6-213ENST00000573166 PDZD2O15018 2839 aa6.93□□□□□ -1.3
SMG6-213ENST00000573166 NBDYA0A0U1RRE5 68 aa6.93□□□□□ -1.3
SMG6-213ENST00000573166 IGLV5-52A0A0A0MRZ9 124 aa6.93□□□□□ -1.3
SMG6-213ENST00000573166 TEX49A0A1B0GTD5 131 aa6.93□□□□□ -1.3
SMG6-213ENST00000573166 C6orf223Q8N319 242 aa6.93□□□□□ -1.3
SMG6-213ENST00000573166 NDUFV3P56181 108 aaKnown RBP6.93□□□□□ -1.3
SMG6-213ENST00000573166 IGHV3OR16-9A0A0B4J2B5 98 aa6.92□□□□□ -1.3
SMG6-213ENST00000573166 HIGD2AQ9BW72 106 aa6.92□□□□□ -1.3
SMG6-213ENST00000573166 TRBV30A0A0K0K1B3 111 aa6.91□□□□□ -1.3
SMG6-213ENST00000573166 C3orf84H3BNL1 204 aa6.91□□□□□ -1.3
SMG6-213ENST00000573166 C7orf33Q8WU49 177 aa6.91□□□□□ -1.3
SMG6-213ENST00000573166 IGKV2-28A0A075B6P5 120 aa6.9□□□□□ -1.3
SMG6-213ENST00000573166 A0A0U1RQV1 116 aa6.9□□□□□ -1.3
SMG6-213ENST00000573166 LINC01546A6NGU7 62 aa6.9□□□□□ -1.3
SMG6-213ENST00000573166 TIMM17BO60830 172 aa6.9□□□□□ -1.3
SMG6-213ENST00000573166 IGKV2D-28P01615 120 aa6.9□□□□□ -1.3
SMG6-213ENST00000573166 SMCPP49901 116 aaPredicted RBP6.9□□□□□ -1.3
SMG6-213ENST00000573166 COX17Q14061 63 aa6.9□□□□□ -1.3
SMG6-213ENST00000573166 TRIAP1O43715 76 aa6.9□□□□□ -1.31
SMG6-213ENST00000573166 LINC00474Q9P2X8 69 aa6.9□□□□□ -1.31
SMG6-213ENST00000573166 CDK2AP2O75956 126 aa6.9□□□□□ -1.31
SMG6-213ENST00000573166 DNAH10OSP0CZ25 163 aa6.89□□□□□ -1.31
SMG6-213ENST00000573166 V9GYY9 64 aa6.89□□□□□ -1.31
SMG6-213ENST00000573166 OTOGQ6ZRI0 2925 aa6.89□□□□□ -1.31
SMG6-213ENST00000573166 FAM19A1Q7Z5A9 133 aa6.89□□□□□ -1.31
SMG6-213ENST00000573166 C2orf48Q96LS8 159 aa6.89□□□□□ -1.31
SMG6-213ENST00000573166 LRCOL1A6NCL2 159 aa6.89□□□□□ -1.31
SMG6-213ENST00000573166 H3BQ85 93 aa6.89□□□□□ -1.31
SMG6-213ENST00000573166 TMEM256-PLSCR3K7ERE1 68 aa6.89□□□□□ -1.31
SMG6-213ENST00000573166 ENHOQ6UWT2 76 aa6.89□□□□□ -1.31
SMG6-213ENST00000573166 Q6ZRU5 148 aa6.89□□□□□ -1.31
SMG6-213ENST00000573166 COX7BP24311 80 aa6.88□□□□□ -1.31
SMG6-213ENST00000573166 hADV29S1A0JD25 119 aa6.88□□□□□ -1.31
SMG6-213ENST00000573166 M0QXV9 152 aa6.88□□□□□ -1.31
SMG6-213ENST00000573166 RPL37AP8A6NKH3 93 aa6.87□□□□□ -1.31
SMG6-213ENST00000573166 FUSP35637 526 aaKnown RBP eCLIP6.87□□□□□ -1.31
SMG6-213ENST00000573166 LINC01561Q8N1V8 128 aa6.87□□□□□ -1.31
SMG6-213ENST00000573166 C14orf132Q9NPU4 83 aa6.87□□□□□ -1.31
SMG6-213ENST00000573166 NDUFC2-KCTD14E9PQ53 114 aa6.87□□□□□ -1.31
SMG6-213ENST00000573166 M0R378 163 aa6.87□□□□□ -1.31
SMG6-213ENST00000573166 PRO0461Q9UI25 63 aa6.87□□□□□ -1.31
SMG6-213ENST00000573166 UQCRQO14949 82 aa6.86□□□□□ -1.31
SMG6-213ENST00000573166 C6orf99Q4VX62 202 aa6.86□□□□□ -1.31
SMG6-213ENST00000573166 PDE6GP18545 87 aa6.85□□□□□ -1.31
SMG6-213ENST00000573166 NREPQ16612 68 aa6.85□□□□□ -1.31
SMG6-213ENST00000573166 STAB2Q8WWQ8 2551 aa6.85□□□□□ -1.31
SMG6-213ENST00000573166 F8WDY8 70 aa6.85□□□□□ -1.31
SMG6-213ENST00000573166 ADAMTSL4-AS1Q5T5F5 129 aa6.85□□□□□ -1.31
SMG6-213ENST00000573166 CDIP1Q9H305 208 aa6.85□□□□□ -1.31
SMG6-213ENST00000573166 MRPL55Q7Z7F7 128 aaKnown RBP6.84□□□□□ -1.31
SMG6-213ENST00000573166 APLNQ9ULZ1 77 aa6.84□□□□□ -1.31
SMG6-213ENST00000573166 IGLV5-39A0A0G2JS06 123 aa6.84□□□□□ -1.31
SMG6-213ENST00000573166 NBPF19A0A087WUL8 3843 aa6.84□□□□□ -1.32
SMG6-213ENST00000573166 TRAV23DV6A0A075B6W5 121 aa6.84□□□□□ -1.32
SMG6-213ENST00000573166 LST1O00453 97 aa6.84□□□□□ -1.32
SMG6-213ENST00000573166 CCDC179H3BU77 68 aa6.83□□□□□ -1.32
SMG6-213ENST00000573166 PRR3P79522 188 aaKnown RBP6.83□□□□□ -1.32
SMG6-213ENST00000573166 IMUPQ9GZP8 106 aa6.82□□□□□ -1.32
SMG6-213ENST00000573166 IGLV5-45A0A087WSX0 123 aa6.82□□□□□ -1.32
SMG6-213ENST00000573166 A0A096LNI7 61 aa6.81□□□□□ -1.32
SMG6-213ENST00000573166 SDIM1Q6ZPB5 146 aa6.81□□□□□ -1.32
SMG6-213ENST00000573166 C10orf25Q5T742 122 aa6.81□□□□□ -1.32
SMG6-213ENST00000573166 C20orf197Q8N268 126 aa6.8□□□□□ -1.32
SMG6-213ENST00000573166 C4orf48Q5BLP8 95 aa6.8□□□□□ -1.32
SMG6-213ENST00000573166 PRR34Q9NV39 138 aa6.8□□□□□ -1.32
SMG6-213ENST00000573166 C6orf48Q9UBA6 75 aa6.8□□□□□ -1.32
SMG6-213ENST00000573166 TRBV10-3A0A0K0K1G6 114 aa6.79□□□□□ -1.32
SMG6-213ENST00000573166 ZNF73O43830 326 aaPredicted RBP6.79□□□□□ -1.32
SMG6-213ENST00000573166 KRTAP21-3Q3LHN1 58 aa6.79□□□□□ -1.32
SMG6-213ENST00000573166 ATP5EP2Q5VTU8 51 aa6.79□□□□□ -1.32
SMG6-213ENST00000573166 C3orf22Q8N5N4 141 aa6.79□□□□□ -1.32
SMG6-213ENST00000573166 MPLKIPQ8TAP9 179 aa6.78□□□□□ -1.32
SMG6-213ENST00000573166 SMIM11BQ8TCY0 68 aa6.78□□□□□ -1.32
SMG6-213ENST00000573166 EIF4EBP3O60516 100 aaPredicted RBP6.78□□□□□ -1.32
SMG6-213ENST00000573166 HRCT1Q6UXD1 115 aa6.78□□□□□ -1.32
SMG6-213ENST00000573166 UPK3BQ9BT76 320 aa6.78□□□□□ -1.32
SMG6-213ENST00000573166 ZFHX3Q15911 3703 aa6.78□□□□□ -1.32
SMG6-213ENST00000573166 SLPIP03973 132 aa6.77□□□□□ -1.32
SMG6-213ENST00000573166 SPTSSBQ8NFR3 76 aa6.77□□□□□ -1.33
SMG6-213ENST00000573166 PPDPFQ9H3Y8 114 aa6.77□□□□□ -1.33
SMG6-213ENST00000573166 RTL8CO15255 209 aa6.77□□□□□ -1.33
SMG6-213ENST00000573166 BSNQ9UPA5 3926 aa6.77□□□□□ -1.33
SMG6-213ENST00000573166 FAM240AA0A1B0GVK7 77 aa6.77□□□□□ -1.33
SMG6-213ENST00000573166 C1orf195Q5TG92 126 aa6.76□□□□□ -1.33
SMG6-213ENST00000573166 Q6Q795 121 aa6.76□□□□□ -1.33
SMG6-213ENST00000573166 TENM1Q9UKZ4 2725 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms