RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 DEFB121Q5J5C9 76 aa0.43□□□□□ -2.34
VPS35-207ENST00000568191 Q6ZRX8 168 aa0.43□□□□□ -2.34
VPS35-207ENST00000568191 DEFB107AQ8IZN7 70 aa0.43□□□□□ -2.34
VPS35-207ENST00000568191 PROK2Q9HC23 129 aa0.43□□□□□ -2.34
VPS35-207ENST00000568191 PLAC8Q9NZF1 115 aa0.43□□□□□ -2.34
VPS35-207ENST00000568191 UBE2D4Q9Y2X8 147 aa0.43□□□□□ -2.34
VPS35-207ENST00000568191 A0A0G2JMZ2 1700 aa0.43□□□□□ -2.34
VPS35-207ENST00000568191 POLR1AO95602 1720 aaPredicted RBP0.43□□□□□ -2.34
VPS35-207ENST00000568191 QSER1Q2KHR3 1735 aa0.43□□□□□ -2.34
VPS35-207ENST00000568191 PDE4DIPQ5VU43 2346 aa0.43□□□□□ -2.34
VPS35-207ENST00000568191 ZNF292O60281 2723 aa0.43□□□□□ -2.34
VPS35-207ENST00000568191 LRP6O75581 1613 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 ABCA9Q8IUA7 1624 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 EIF2AK4Q9P2K8 1649 aaKnown RBP0.42□□□□□ -2.34
VPS35-207ENST00000568191 NKTRP30414 1462 aaKnown RBP0.42□□□□□ -2.34
VPS35-207ENST00000568191 TIAM1Q13009 1591 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 SAMD9Q5K651 1589 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 TRBV7-4A0A0J9YYF1 115 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 TRBV6-1A0A0K0K1D8 114 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 K7EIL1 84 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 SMIM13P0DJ93 91 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 SPINK7P58062 85 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 ATP5EP2Q5VTU8 51 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 C10orf113Q5VZT2 155 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 Q6JHZ5 121 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 SPATA8Q6RVD6 105 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 HEPN1Q6WQI6 88 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 C6orf201Q7Z4U5 140 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 TMEM263Q8WUH6 116 aaKnown RBP0.42□□□□□ -2.34
VPS35-207ENST00000568191 ZFYVE26Q68DK2 2539 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 URB2Q14146 1524 aaKnown RBP0.42□□□□□ -2.34
VPS35-207ENST00000568191 ASXL1Q8IXJ9 1541 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 LRRC7Q96NW7 1537 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 LAMC1P11047 1609 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 PAPPAQ13219 1627 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 USP32Q8NFA0 1604 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 ABCA2Q9BZC7 2435 aa0.42□□□□□ -2.34
VPS35-207ENST00000568191 TPRP12270 2363 aaKnown RBP0.41□□□□□ -2.34
VPS35-207ENST00000568191 CDC42BPGQ6DT37 1551 aa0.41□□□□□ -2.34
VPS35-207ENST00000568191 TSC2P49815 1807 aa0.41□□□□□ -2.34
VPS35-207ENST00000568191 HFM1A2PYH4 1435 aa0.41□□□□□ -2.34
VPS35-207ENST00000568191 NHSQ6T4R5 1651 aa0.41□□□□□ -2.34
VPS35-207ENST00000568191 UMAD1C9J7I0 102 aa0.41□□□□□ -2.34
VPS35-207ENST00000568191 PIN1P1O15428 100 aa0.41□□□□□ -2.34
VPS35-207ENST00000568191 GNGT1P63211 74 aa0.41□□□□□ -2.34
VPS35-207ENST00000568191 HAMPP81172 84 aa0.41□□□□□ -2.34
VPS35-207ENST00000568191 ATRQ13535 2644 aa0.41□□□□□ -2.34
VPS35-207ENST00000568191 MAP1BP46821 2468 aaKnown RBP0.41□□□□□ -2.34
VPS35-207ENST00000568191 LRRC37AA6NMS7 1700 aa0.41□□□□□ -2.34
VPS35-207ENST00000568191 NRAPQ86VF7 1730 aa0.41□□□□□ -2.34
VPS35-207ENST00000568191 DOT1LQ8TEK3 1739 aa0.41□□□□□ -2.34
VPS35-207ENST00000568191 CD163L1Q9NR16 1453 aa0.41□□□□□ -2.34
VPS35-207ENST00000568191 CHD8Q9HCK8 2581 aa0.41□□□□□ -2.34
VPS35-207ENST00000568191 ERCC6L2Q5T890 1561 aa0.4□□□□□ -2.34
VPS35-207ENST00000568191 WNK2Q9Y3S1 2297 aa0.4□□□□□ -2.34
VPS35-207ENST00000568191 PREX1Q8TCU6 1659 aa0.4□□□□□ -2.34
VPS35-207ENST00000568191 CHD6Q8TD26 2715 aa0.4□□□□□ -2.35
VPS35-207ENST00000568191 SLIT1O75093 1534 aa0.4□□□□□ -2.35
VPS35-207ENST00000568191 LMTK2Q8IWU2 1503 aa0.4□□□□□ -2.35
VPS35-207ENST00000568191 TULP4Q9NRJ4 1543 aa0.4□□□□□ -2.35
VPS35-207ENST00000568191 CSPG4Q6UVK1 2322 aa0.4□□□□□ -2.35
VPS35-207ENST00000568191 PREX2Q70Z35 1606 aa0.4□□□□□ -2.35
VPS35-207ENST00000568191 A0A087WWC5 75 aa0.4□□□□□ -2.35
VPS35-207ENST00000568191 A0A087WXM4 84 aa0.4□□□□□ -2.35
VPS35-207ENST00000568191 A0A1B0GU69 56 aa0.4□□□□□ -2.35
VPS35-207ENST00000568191 A0A1B0GUT8 65 aa0.4□□□□□ -2.35
VPS35-207ENST00000568191 S100A3P33764 101 aa0.4□□□□□ -2.35
VPS35-207ENST00000568191 IFI27P40305 119 aaPredicted RBP0.4□□□□□ -2.35
VPS35-207ENST00000568191 FXYD6P3P58550 94 aa0.4□□□□□ -2.35
VPS35-207ENST00000568191 UBE2DNLQ8IWF7 75 aa0.4□□□□□ -2.35
VPS35-207ENST00000568191 S100ZQ8WXG8 99 aa0.4□□□□□ -2.35
VPS35-207ENST00000568191 RICTORQ6R327 1708 aa0.4□□□□□ -2.35
VPS35-207ENST00000568191 CEP290O15078 2479 aa0.4□□□□□ -2.35
VPS35-207ENST00000568191 ASH1LQ9NR48 2969 aaKnown RBP0.39□□□□□ -2.35
VPS35-207ENST00000568191 NESP48681 1621 aa0.39□□□□□ -2.35
VPS35-207ENST00000568191 ABCA6Q8N139 1617 aa0.39□□□□□ -2.35
VPS35-207ENST00000568191 PTPN13Q12923 2485 aa0.39□□□□□ -2.35
VPS35-207ENST00000568191 TRAV21A0A0B4J279 112 aa0.39□□□□□ -2.35
VPS35-207ENST00000568191 LINC00959A0A1B0GUT2 108 aa0.39□□□□□ -2.35
VPS35-207ENST00000568191 COX8AP10176 69 aa0.39□□□□□ -2.35
VPS35-207ENST00000568191 DEFB112Q30KQ8 113 aa0.39□□□□□ -2.35
VPS35-207ENST00000568191 SSBP3-AS1Q7Z2R9 100 aa0.39□□□□□ -2.35
VPS35-207ENST00000568191 HILPDAQ9Y5L2 63 aa0.39□□□□□ -2.35
VPS35-207ENST00000568191 RALGAPBQ86X10 1494 aa0.39□□□□□ -2.35
VPS35-207ENST00000568191 PLXNC1O60486 1568 aa0.39□□□□□ -2.35
VPS35-207ENST00000568191 NBASA2RRP1 2371 aa0.39□□□□□ -2.35
VPS35-207ENST00000568191 FMN2Q9NZ56 1722 aa0.38□□□□□ -2.35
VPS35-207ENST00000568191 NAV2Q8IVL1 2488 aa0.38□□□□□ -2.35
VPS35-207ENST00000568191 WNK1Q9H4A3 2382 aa0.38□□□□□ -2.35
VPS35-207ENST00000568191 KIF1AQ12756 1690 aa0.38□□□□□ -2.35
VPS35-207ENST00000568191 ALS2Q96Q42 1657 aa0.38□□□□□ -2.35
VPS35-207ENST00000568191 H3BVH4 76 aa0.38□□□□□ -2.35
VPS35-207ENST00000568191 I3L2K1 104 aa0.38□□□□□ -2.35
VPS35-207ENST00000568191 NDUFB1O75438 58 aa0.38□□□□□ -2.35
VPS35-207ENST00000568191 IFI6P09912 130 aa0.38□□□□□ -2.35
VPS35-207ENST00000568191 HMGA1P17096 107 aaKnown RBP0.38□□□□□ -2.35
VPS35-207ENST00000568191 SPINK9Q5DT21 86 aa0.38□□□□□ -2.35
VPS35-207ENST00000568191 WFDC9Q8NEX5 89 aa0.38□□□□□ -2.35
VPS35-207ENST00000568191 GAFA1Q96PS6 74 aa0.38□□□□□ -2.35
VPS35-207ENST00000568191 C10orf95Q9H7T3 257 aa0.38□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms