RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 A0A0B4J2C4 111 aa4.05□□□□□ -1.76
VPS39-209ENST00000568029 LOC107984156A0A0G2JMH3 177 aa4.05□□□□□ -1.76
VPS39-209ENST00000568029 A4D1N5 150 aa4.05□□□□□ -1.76
VPS39-209ENST00000568029 TMEM262E9PQX1 116 aa4.05□□□□□ -1.76
VPS39-209ENST00000568029 F8W1H4 67 aa4.05□□□□□ -1.76
VPS39-209ENST00000568029 SCGB1C2P0DMR2 95 aa4.05□□□□□ -1.76
VPS39-209ENST00000568029 MIAQ16674 131 aa4.05□□□□□ -1.76
VPS39-209ENST00000568029 ARL17AQ8IVW1 177 aa4.05□□□□□ -1.76
VPS39-209ENST00000568029 LRP1BQ9NZR2 4599 aa4.04□□□□□ -1.76
VPS39-209ENST00000568029 A0A087X002 238 aa4.04□□□□□ -1.76
VPS39-209ENST00000568029 TSPAN13O95857 204 aa4.04□□□□□ -1.76
VPS39-209ENST00000568029 PSMB2P49721 201 aa4.04□□□□□ -1.76
VPS39-209ENST00000568029 SS18Q15532 418 aa4.04□□□□□ -1.76
VPS39-209ENST00000568029 MRPL23Q16540 153 aaKnown RBP4.04□□□□□ -1.76
VPS39-209ENST00000568029 OCIAD2Q56VL3 154 aa4.04□□□□□ -1.76
VPS39-209ENST00000568029 SFTA2Q6UW10 78 aa4.04□□□□□ -1.76
VPS39-209ENST00000568029 CBY1Q9Y3M2 126 aa4.04□□□□□ -1.76
VPS39-209ENST00000568029 MYCBP2O75592 4640 aa4.04□□□□□ -1.76
VPS39-209ENST00000568029 TRAV26-1A0A087WT03 109 aa4.03□□□□□ -1.76
VPS39-209ENST00000568029 F5H768 121 aa4.03□□□□□ -1.76
VPS39-209ENST00000568029 IGHV3-33P01772 117 aa4.03□□□□□ -1.76
VPS39-209ENST00000568029 Q1RN00 199 aa4.03□□□□□ -1.76
VPS39-209ENST00000568029 LINC01561Q8N1V8 128 aa4.03□□□□□ -1.76
VPS39-209ENST00000568029 Q8NAQ8 132 aa4.03□□□□□ -1.76
VPS39-209ENST00000568029 COX7B2Q8TF08 81 aa4.03□□□□□ -1.76
VPS39-209ENST00000568029 IGLV4-60A0A075B6I1 120 aa4.02□□□□□ -1.77
VPS39-209ENST00000568029 IGKV3OR2-268A0A0C4DH90 116 aa4.02□□□□□ -1.77
VPS39-209ENST00000568029 LINC00959A0A1B0GUT2 108 aa4.02□□□□□ -1.77
VPS39-209ENST00000568029 H3BMG7 143 aa4.02□□□□□ -1.77
VPS39-209ENST00000568029 J3QR89 54 aa4.02□□□□□ -1.77
VPS39-209ENST00000568029 DEFB4AO15263 64 aa4.02□□□□□ -1.77
VPS39-209ENST00000568029 COX6CP09669 75 aa4.02□□□□□ -1.77
VPS39-209ENST00000568029 RBX1P62877 108 aa4.02□□□□□ -1.77
VPS39-209ENST00000568029 MEIG1Q5JSS6 88 aa4.02□□□□□ -1.77
VPS39-209ENST00000568029 ZNF625Q96I27 306 aaPredicted RBP4.02□□□□□ -1.77
VPS39-209ENST00000568029 PPDPFQ9H3Y8 114 aa4.02□□□□□ -1.77
VPS39-209ENST00000568029 ICOSQ9Y6W8 199 aa4.02□□□□□ -1.77
VPS39-209ENST00000568029 NACAE9PAV3 2078 aa4.01□□□□□ -1.77
VPS39-209ENST00000568029 A0A087WZ39 114 aa4.01□□□□□ -1.77
VPS39-209ENST00000568029 IGHV3OR16-9A0A0B4J2B5 98 aa4.01□□□□□ -1.77
VPS39-209ENST00000568029 H7C2G1 150 aa4.01□□□□□ -1.77
VPS39-209ENST00000568029 HTN3P15516 51 aa4.01□□□□□ -1.77
VPS39-209ENST00000568029 C6orf226Q5I0X4 101 aa4.01□□□□□ -1.77
VPS39-209ENST00000568029 LINC00308Q8TCZ7 52 aa4.01□□□□□ -1.77
VPS39-209ENST00000568029 KRTAP2-2Q9BYT5 123 aa4.01□□□□□ -1.77
VPS39-209ENST00000568029 TOMM7Q9P0U1 55 aa4.01□□□□□ -1.77
VPS39-209ENST00000568029 HMCN2Q8NDA2 5059 aa4.01□□□□□ -1.77
VPS39-209ENST00000568029 A0A096LPF7 62 aa4□□□□□ -1.77
VPS39-209ENST00000568029 TRBV30A0A0K0K1B3 111 aa4□□□□□ -1.77
VPS39-209ENST00000568029 A0A1B0GVY2 172 aa4□□□□□ -1.77
VPS39-209ENST00000568029 WFDC2Q14508 124 aa4□□□□□ -1.77
VPS39-209ENST00000568029 ATXN8Q156A1 80 aa4□□□□□ -1.77
VPS39-209ENST00000568029 LELP1Q5T871 98 aa4□□□□□ -1.77
VPS39-209ENST00000568029 C5orf38Q86SI9 138 aa4□□□□□ -1.77
VPS39-209ENST00000568029 VPS25Q9BRG1 176 aa4□□□□□ -1.77
VPS39-209ENST00000568029 CELA1Q9UNI1 258 aa4□□□□□ -1.77
VPS39-209ENST00000568029 IBA57-AS1B1ANH7 110 aa3.99□□□□□ -1.77
VPS39-209ENST00000568029 H3BNG1 76 aa3.99□□□□□ -1.77
VPS39-209ENST00000568029 COX7A2LO14548 114 aa3.99□□□□□ -1.77
VPS39-209ENST00000568029 TCL1BO95988 128 aa3.99□□□□□ -1.77
VPS39-209ENST00000568029 ANGP03950 147 aaKnown RBP3.99□□□□□ -1.77
VPS39-209ENST00000568029 XCL1P47992 114 aa3.99□□□□□ -1.77
VPS39-209ENST00000568029 LINC00158P58513 81 aa3.99□□□□□ -1.77
VPS39-209ENST00000568029 NPC2P61916 151 aa3.99□□□□□ -1.77
VPS39-209ENST00000568029 CD164L2Q6UWJ8 174 aa3.99□□□□□ -1.77
VPS39-209ENST00000568029 DNAH5Q8TE73 4624 aa3.98□□□□□ -1.77
VPS39-209ENST00000568029 TRAV13-2A0A0B4J235 113 aa3.98□□□□□ -1.77
VPS39-209ENST00000568029 A0A0U1RRA0 63 aa3.98□□□□□ -1.77
VPS39-209ENST00000568029 M0QXV9 152 aa3.98□□□□□ -1.77
VPS39-209ENST00000568029 RPL13AP40429 203 aaKnown RBP3.98□□□□□ -1.77
VPS39-209ENST00000568029 CXCL5P42830 114 aa3.98□□□□□ -1.77
VPS39-209ENST00000568029 XGP55808 180 aa3.98□□□□□ -1.77
VPS39-209ENST00000568029 CKS1BP61024 79 aa3.98□□□□□ -1.77
VPS39-209ENST00000568029 REG3AQ06141 175 aa3.98□□□□□ -1.77
VPS39-209ENST00000568029 Q8IZM0 81 aa3.98□□□□□ -1.77
VPS39-209ENST00000568029 LINC00269Q8N2A0 174 aa3.98□□□□□ -1.77
VPS39-209ENST00000568029 DAND5Q8N907 189 aa3.98□□□□□ -1.77
VPS39-209ENST00000568029 C2orf48Q96LS8 159 aa3.98□□□□□ -1.77
VPS39-209ENST00000568029 C11orf68Q9H3H3 251 aaKnown RBP3.98□□□□□ -1.77
VPS39-209ENST00000568029 PRO0461Q9UI25 63 aa3.98□□□□□ -1.77
VPS39-209ENST00000568029 ETDBQ3ZM63 59 aa3.97□□□□□ -1.77
VPS39-209ENST00000568029 LYPD5Q6UWN5 251 aa3.97□□□□□ -1.77
VPS39-209ENST00000568029 Q6ZRP5 223 aa3.97□□□□□ -1.77
VPS39-209ENST00000568029 MIR7-3HGQ8N6C7 128 aa3.97□□□□□ -1.77
VPS39-209ENST00000568029 CHCHD10Q8WYQ3 142 aaPredicted RBP3.97□□□□□ -1.77
VPS39-209ENST00000568029 FAM218AQ96MZ4 157 aa3.97□□□□□ -1.77
VPS39-209ENST00000568029 TRAV8-4A0A0B4J246 113 aa3.96□□□□□ -1.78
VPS39-209ENST00000568029 C9JAW5 83 aa3.96□□□□□ -1.78
VPS39-209ENST00000568029 SLC25A20O43772 301 aa3.96□□□□□ -1.78
VPS39-209ENST00000568029 COX17Q14061 63 aa3.96□□□□□ -1.78
VPS39-209ENST00000568029 LINC01620Q4KN68 170 aa3.96□□□□□ -1.78
VPS39-209ENST00000568029 CLPSL2Q6UWE3 100 aa3.96□□□□□ -1.78
VPS39-209ENST00000568029 TEN1Q86WV5 123 aa3.96□□□□□ -1.78
VPS39-209ENST00000568029 PPDPFLQ8WWR9 84 aa3.96□□□□□ -1.78
VPS39-209ENST00000568029 SND1-IT1Q9HBX3 110 aa3.96□□□□□ -1.78
VPS39-209ENST00000568029 KLK5Q9Y337 293 aaPredicted RBP3.96□□□□□ -1.78
VPS39-209ENST00000568029 FAT1Q14517 4588 aa3.95□□□□□ -1.78
VPS39-209ENST00000568029 IGLV7-46A0A075B6I9 117 aa3.95□□□□□ -1.78
VPS39-209ENST00000568029 TRBV10-2A0A0K0K1G8 114 aa3.95□□□□□ -1.78
VPS39-209ENST00000568029 CRPP02741 224 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms