RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 LINC00052Q96N35 136 aa1.83□□□□□ -2.12
VPS13C-210ENST00000561258 TPRKBQ9Y3C4 175 aa1.83□□□□□ -2.12
VPS13C-210ENST00000561258 SNURFQ9Y675 71 aa1.83□□□□□ -2.12
VPS13C-210ENST00000561258 HMCN1Q96RW7 5635 aa1.82□□□□□ -2.12
VPS13C-210ENST00000561258 GTF2A1P52655 376 aaPredicted RBP1.82□□□□□ -2.12
VPS13C-210ENST00000561258 SNRPGP62308 76 aaKnown RBP1.82□□□□□ -2.12
VPS13C-210ENST00000561258 KLK9Q2XQG4 91 aa1.82□□□□□ -2.12
VPS13C-210ENST00000561258 GDF5OSQ5U4N7 250 aa1.82□□□□□ -2.12
VPS13C-210ENST00000561258 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.82□□□□□ -2.12
VPS13C-210ENST00000561258 VSTM2AQ8TAG5 236 aa1.82□□□□□ -2.12
VPS13C-210ENST00000561258 BRK1Q8WUW1 75 aa1.82□□□□□ -2.12
VPS13C-210ENST00000561258 CMC2Q9NRP2 79 aa1.82□□□□□ -2.12
VPS13C-210ENST00000561258 CDC42SE1Q9NRR8 79 aa1.82□□□□□ -2.12
VPS13C-210ENST00000561258 C9JAW5 83 aa1.81□□□□□ -2.12
VPS13C-210ENST00000561258 ZNF670-ZNF695F2Z2N8 137 aa1.81□□□□□ -2.12
VPS13C-210ENST00000561258 GNG7O60262 68 aa1.81□□□□□ -2.12
VPS13C-210ENST00000561258 IGHV3-30P01768 117 aa1.81□□□□□ -2.12
VPS13C-210ENST00000561258 IGHV3-33P01772 117 aa1.81□□□□□ -2.12
VPS13C-210ENST00000561258 IGHV3-30-5P0DP03 117 aa1.81□□□□□ -2.12
VPS13C-210ENST00000561258 TPT1P13693 172 aaKnown RBP1.81□□□□□ -2.12
VPS13C-210ENST00000561258 DEFB1P60022 68 aa1.81□□□□□ -2.12
VPS13C-210ENST00000561258 MT1HP80294 61 aa1.81□□□□□ -2.12
VPS13C-210ENST00000561258 CIRBPQ14011 172 aaKnown RBP1.81□□□□□ -2.12
VPS13C-210ENST00000561258 TMEM244Q5VVB8 128 aa1.81□□□□□ -2.12
VPS13C-210ENST00000561258 FOXI2Q6ZQN5 318 aa1.81□□□□□ -2.12
VPS13C-210ENST00000561258 LINC00269Q8N2A0 174 aa1.81□□□□□ -2.12
VPS13C-210ENST00000561258 MAFIPQ8WZ33 124 aa1.81□□□□□ -2.12
VPS13C-210ENST00000561258 ORMDL1Q9P0S3 153 aa1.81□□□□□ -2.12
VPS13C-210ENST00000561258 HIGD1AQ9Y241 93 aa1.81□□□□□ -2.12
VPS13C-210ENST00000561258 C9orf170A2RU37 121 aa1.8□□□□□ -2.12
VPS13C-210ENST00000561258 M0R2Z0 102 aa1.8□□□□□ -2.12
VPS13C-210ENST00000561258 INE1O15225 51 aa1.8□□□□□ -2.12
VPS13C-210ENST00000561258 DPM2O94777 84 aa1.8□□□□□ -2.12
VPS13C-210ENST00000561258 ETV6P41212 452 aa1.8□□□□□ -2.12
VPS13C-210ENST00000561258 PRCDQ00LT1 54 aa1.8□□□□□ -2.12
VPS13C-210ENST00000561258 HMGN3Q15651 99 aa1.8□□□□□ -2.12
VPS13C-210ENST00000561258 LINC01556Q5JQF7 62 aa1.8□□□□□ -2.12
VPS13C-210ENST00000561258 FAM74A1Q5RGS3 127 aa1.8□□□□□ -2.12
VPS13C-210ENST00000561258 TMEM263Q8WUH6 116 aaKnown RBP1.8□□□□□ -2.12
VPS13C-210ENST00000561258 TMEM203Q969S6 136 aa1.8□□□□□ -2.12
VPS13C-210ENST00000561258 GSKIPQ9P0R6 139 aa1.8□□□□□ -2.12
VPS13C-210ENST00000561258 PRO0255Q9UI72 69 aa1.8□□□□□ -2.12
VPS13C-210ENST00000561258 MUC17Q685J3 4493 aa1.8□□□□□ -2.12
VPS13C-210ENST00000561258 TRBV6-4A0A1B0GX49 114 aa1.79□□□□□ -2.12
VPS13C-210ENST00000561258 IGLC7A0M8Q6 106 aa1.79□□□□□ -2.12
VPS13C-210ENST00000561258 K7EIM0 57 aa1.79□□□□□ -2.12
VPS13C-210ENST00000561258 UBE2D1P51668 147 aa1.79□□□□□ -2.12
VPS13C-210ENST00000561258 GNG11P61952 73 aa1.79□□□□□ -2.12
VPS13C-210ENST00000561258 SPINK13Q1W4C9 94 aa1.79□□□□□ -2.12
VPS13C-210ENST00000561258 OR8J3Q8NGG0 315 aa1.79□□□□□ -2.12
VPS13C-210ENST00000561258 OR51A4Q8NGJ6 313 aa1.79□□□□□ -2.12
VPS13C-210ENST00000561258 ZNF431Q8TF32 576 aaPredicted RBP1.79□□□□□ -2.12
VPS13C-210ENST00000561258 GPR98Q8WXG9 6306 aa1.79□□□□□ -2.12
VPS13C-210ENST00000561258 MUC12Q9UKN1 5478 aa1.78□□□□□ -2.12
VPS13C-210ENST00000561258 TRAV12-2A0A075B6T6 113 aa1.78□□□□□ -2.12
VPS13C-210ENST00000561258 IGKV2-40A0A087WW87 121 aaPredicted RBP1.78□□□□□ -2.12
VPS13C-210ENST00000561258 F8W1H4 67 aa1.78□□□□□ -2.12
VPS13C-210ENST00000561258 NUPR1O60356 82 aa1.78□□□□□ -2.12
VPS13C-210ENST00000561258 IGKV2D-40P01614 121 aaPredicted RBP1.78□□□□□ -2.12
VPS13C-210ENST00000561258 TRACP01848 142 aa1.78□□□□□ -2.12
VPS13C-210ENST00000561258 MT-ND4LP03901 98 aa1.78□□□□□ -2.12
VPS13C-210ENST00000561258 HMGN1P05114 100 aa1.78□□□□□ -2.12
VPS13C-210ENST00000561258 ARPC4P59998 168 aa1.78□□□□□ -2.12
VPS13C-210ENST00000561258 TCTE3Q8IZS6 198 aa1.78□□□□□ -2.12
VPS13C-210ENST00000561258 OR10AG1Q8NH19 301 aa1.78□□□□□ -2.12
VPS13C-210ENST00000561258 CLEC2BQ92478 149 aa1.78□□□□□ -2.12
VPS13C-210ENST00000561258 RPRMQ9NS64 109 aa1.78□□□□□ -2.12
VPS13C-210ENST00000561258 FKBP11Q9NYL4 201 aa1.78□□□□□ -2.12
VPS13C-210ENST00000561258 GNG8Q9UK08 70 aa1.78□□□□□ -2.12
VPS13C-210ENST00000561258 TRGV1A0A0A0MS02 117 aa1.77□□□□□ -2.13
VPS13C-210ENST00000561258 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.77□□□□□ -2.13
VPS13C-210ENST00000561258 IGKV2-29A2NJV5 120 aaPredicted RBP1.77□□□□□ -2.13
VPS13C-210ENST00000561258 CCL25O15444 150 aa1.77□□□□□ -2.13
VPS13C-210ENST00000561258 KRTAP2-3P0C7H8 128 aa1.77□□□□□ -2.13
VPS13C-210ENST00000561258 TRAPPC2P0DI81 140 aa1.77□□□□□ -2.13
VPS13C-210ENST00000561258 TRAPPC2BP0DI82 140 aa1.77□□□□□ -2.13
VPS13C-210ENST00000561258 COX7CP15954 63 aa1.77□□□□□ -2.13
VPS13C-210ENST00000561258 CKS1BP61024 79 aa1.77□□□□□ -2.13
VPS13C-210ENST00000561258 MIR22HGQ0VDD5 57 aa1.77□□□□□ -2.13
VPS13C-210ENST00000561258 SPINK9Q5DT21 86 aa1.77□□□□□ -2.13
VPS13C-210ENST00000561258 KRTAP2-4Q9BYR9 128 aa1.77□□□□□ -2.13
VPS13C-210ENST00000561258 BANF2Q9H503 90 aa1.77□□□□□ -2.13
VPS13C-210ENST00000561258 PLAC8Q9NZF1 115 aa1.77□□□□□ -2.13
VPS13C-210ENST00000561258 KMT2DO14686 5537 aa1.76□□□□□ -2.13
VPS13C-210ENST00000561258 UQCRQO14949 82 aa1.76□□□□□ -2.13
VPS13C-210ENST00000561258 HBDP02042 147 aa1.76□□□□□ -2.13
VPS13C-210ENST00000561258 SLC25A5P05141 298 aaKnown RBP1.76□□□□□ -2.13
VPS13C-210ENST00000561258 SLC25A4P12235 298 aa1.76□□□□□ -2.13
VPS13C-210ENST00000561258 PPP3R1P63098 170 aa1.76□□□□□ -2.13
VPS13C-210ENST00000561258 WT1-ASQ06250 92 aa1.76□□□□□ -2.13
VPS13C-210ENST00000561258 TEN1Q86WV5 123 aa1.76□□□□□ -2.13
VPS13C-210ENST00000561258 FAM19A2Q8N3H0 131 aa1.76□□□□□ -2.13
VPS13C-210ENST00000561258 OR5AK2Q8NH90 309 aa1.76□□□□□ -2.13
VPS13C-210ENST00000561258 BORCS5Q969J3 196 aa1.76□□□□□ -2.13
VPS13C-210ENST00000561258 LSM10Q969L4 123 aaKnown RBP1.76□□□□□ -2.13
VPS13C-210ENST00000561258 ZFP30Q9Y2G7 519 aa1.76□□□□□ -2.13
VPS13C-210ENST00000561258 I3L2K1 104 aa1.75□□□□□ -2.13
VPS13C-210ENST00000561258 TCRAP04437 139 aa1.75□□□□□ -2.13
VPS13C-210ENST00000561258 ZNF25P17030 456 aaPredicted RBP1.75□□□□□ -2.13
VPS13C-210ENST00000561258 SMCO1Q147U7 214 aa1.75□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms