RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 UPK3BQ9BT76 320 aa1.66□□□□□ -2.14
SPG11-223ENST00000560858 Q9HAA7 133 aa1.66□□□□□ -2.14
SPG11-223ENST00000560858 C14orf132Q9NPU4 83 aa1.66□□□□□ -2.14
SPG11-223ENST00000560858 LINC00846Q9NV44 126 aa1.66□□□□□ -2.14
SPG11-223ENST00000560858 ORMDL1Q9P0S3 153 aa1.66□□□□□ -2.14
SPG11-223ENST00000560858 TOMM7Q9P0U1 55 aa1.66□□□□□ -2.14
SPG11-223ENST00000560858 NAV2Q8IVL1 2488 aa1.65□□□□□ -2.14
SPG11-223ENST00000560858 TRBV10-3A0A0K0K1G6 114 aa1.65□□□□□ -2.15
SPG11-223ENST00000560858 SMIM9A6NGZ8 99 aa1.65□□□□□ -2.15
SPG11-223ENST00000560858 LYRM9A8MSI8 78 aa1.65□□□□□ -2.15
SPG11-223ENST00000560858 JMJD7-PLA2G4BH0Y9G9 81 aa1.65□□□□□ -2.15
SPG11-223ENST00000560858 J3KT08 172 aa1.65□□□□□ -2.15
SPG11-223ENST00000560858 CCKP06307 115 aa1.65□□□□□ -2.15
SPG11-223ENST00000560858 RPL35AP18077 110 aaKnown RBP1.65□□□□□ -2.15
SPG11-223ENST00000560858 PFN2P35080 140 aa1.65□□□□□ -2.15
SPG11-223ENST00000560858 TMEM258P61165 79 aa1.65□□□□□ -2.15
SPG11-223ENST00000560858 KIAA0087Q14695 138 aa1.65□□□□□ -2.15
SPG11-223ENST00000560858 S100A7L2Q5SY68 101 aa1.65□□□□□ -2.15
SPG11-223ENST00000560858 LYPD5Q6UWN5 251 aa1.65□□□□□ -2.15
SPG11-223ENST00000560858 SERP2Q8N6R1 65 aa1.65□□□□□ -2.15
SPG11-223ENST00000560858 LINC01006Q8NI28 216 aa1.65□□□□□ -2.15
SPG11-223ENST00000560858 USP9YO00507 2555 aaPredicted RBP1.65□□□□□ -2.15
SPG11-223ENST00000560858 ACACBO00763 2458 aa1.65□□□□□ -2.15
SPG11-223ENST00000560858 PTPN13Q12923 2485 aa1.65□□□□□ -2.15
SPG11-223ENST00000560858 ZANQ9Y493 2812 aa1.65□□□□□ -2.15
SPG11-223ENST00000560858 CFAP46Q8IYW2 2715 aa1.65□□□□□ -2.15
SPG11-223ENST00000560858 PIEZO1Q92508 2521 aa1.65□□□□□ -2.15
SPG11-223ENST00000560858 IGSF10Q6WRI0 2623 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 USP24Q9UPU5 2620 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 MYO9AB2RTY4 2548 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 TLN2Q9Y4G6 2542 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 UBR5O95071 2799 aaPredicted RBP1.64□□□□□ -2.15
SPG11-223ENST00000560858 LOC110117498A0A087WWA1 95 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 GVQW2A0A096LPI5 108 aaPredicted RBP1.64□□□□□ -2.15
SPG11-223ENST00000560858 IGKV3OR2-268A0A0C4DH90 116 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 hADV29S1A0JD25 119 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 USP17L23D6RBM5 183 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 NDUFC2-KCTD14E9PQ53 114 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 TMEM256-PLSCR3K7ERE1 68 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 NCR3O14931 201 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 BCE1O60756 84 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 PRB1P04280 392 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 XCL1P47992 114 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 RPS28P62857 69 aaKnown RBP1.64□□□□□ -2.15
SPG11-223ENST00000560858 C6orf226Q5I0X4 101 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 C9orf66Q5T8R8 295 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 CD164L2Q6UWJ8 174 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 LINC00575Q6W349 94 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 Q6ZQT0 140 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 C6orf223Q8N319 242 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 ZNF843Q8N446 348 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 Q8N814 137 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 Q8NDZ9 215 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 WFDC11Q8NEX6 87 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 CYSTM1Q9H1C7 97 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 PRO0255Q9UI72 69 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 ITPR3Q14573 2671 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 CELSR2Q9HCU4 2923 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 LRRK2Q5S007 2527 aa1.64□□□□□ -2.15
SPG11-223ENST00000560858 MXRA5Q9NR99 2828 aa1.63□□□□□ -2.15
SPG11-223ENST00000560858 SVEP1Q4LDE5 3571 aa1.63□□□□□ -2.15
SPG11-223ENST00000560858 CRYBG3Q68DQ2 2970 aa1.63□□□□□ -2.15
SPG11-223ENST00000560858 ANK3Q12955 4377 aaKnown RBP1.63□□□□□ -2.15
SPG11-223ENST00000560858 UTP20O75691 2785 aaKnown RBP1.63□□□□□ -2.15
SPG11-223ENST00000560858 JMJD1CQ15652 2540 aa1.63□□□□□ -2.15
SPG11-223ENST00000560858 SETXQ7Z333 2677 aaKnown RBP1.63□□□□□ -2.15
SPG11-223ENST00000560858 A0A087WVE0 104 aa1.63□□□□□ -2.15
SPG11-223ENST00000560858 IGKV3D-7A0A0C4DH55 119 aa1.63□□□□□ -2.15
SPG11-223ENST00000560858 TRBV7-6A0A0J9YX20 115 aa1.63□□□□□ -2.15
SPG11-223ENST00000560858 H3BQ85 93 aa1.63□□□□□ -2.15
SPG11-223ENST00000560858 IGLV6-57P01721 117 aa1.63□□□□□ -2.15
SPG11-223ENST00000560858 REG3AQ06141 175 aa1.63□□□□□ -2.15
SPG11-223ENST00000560858 SPAG11BQ08648 103 aa1.63□□□□□ -2.15
SPG11-223ENST00000560858 CFAP161Q6P656 301 aa1.63□□□□□ -2.15
SPG11-223ENST00000560858 CLPSL2Q6UWE3 100 aa1.63□□□□□ -2.15
SPG11-223ENST00000560858 C3orf56Q8N813 242 aa1.63□□□□□ -2.15
SPG11-223ENST00000560858 Q8NAQ8 132 aa1.63□□□□□ -2.15
SPG11-223ENST00000560858 OR13C6PQ8NH95 151 aa1.63□□□□□ -2.15
SPG11-223ENST00000560858 CHCHD10Q8WYQ3 142 aaPredicted RBP1.63□□□□□ -2.15
SPG11-223ENST00000560858 C11orf68Q9H3H3 251 aaKnown RBP1.63□□□□□ -2.15
SPG11-223ENST00000560858 FAM208BQ5VWN6 2430 aa1.63□□□□□ -2.15
SPG11-223ENST00000560858 COL12A1Q99715 3063 aa1.63□□□□□ -2.15
SPG11-223ENST00000560858 FLNCQ14315 2725 aa1.63□□□□□ -2.15
SPG11-223ENST00000560858 C2CD3Q4AC94 2353 aa1.63□□□□□ -2.15
SPG11-223ENST00000560858 POLQO75417 2590 aa1.62□□□□□ -2.15
SPG11-223ENST00000560858 TRAV7A0A075B6U4 112 aa1.62□□□□□ -2.15
SPG11-223ENST00000560858 TRBV7-4A0A0J9YYF1 115 aa1.62□□□□□ -2.15
SPG11-223ENST00000560858 EPM2AB3EWF7 344 aa1.62□□□□□ -2.15
SPG11-223ENST00000560858 OXTP01178 125 aa1.62□□□□□ -2.15
SPG11-223ENST00000560858 ANGP03950 147 aaKnown RBP1.62□□□□□ -2.15
SPG11-223ENST00000560858 DEFB130BP0DP73 79 aa1.62□□□□□ -2.15
SPG11-223ENST00000560858 DEFB130AP0DP74 79 aa1.62□□□□□ -2.15
SPG11-223ENST00000560858 PDE6GP18545 87 aa1.62□□□□□ -2.15
SPG11-223ENST00000560858 C6orf99Q4VX62 202 aa1.62□□□□□ -2.15
SPG11-223ENST00000560858 LELP1Q5T871 98 aa1.62□□□□□ -2.15
SPG11-223ENST00000560858 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.62□□□□□ -2.15
SPG11-223ENST00000560858 LINC00269Q8N2A0 174 aa1.62□□□□□ -2.15
SPG11-223ENST00000560858 DIRC1Q969H9 104 aa1.62□□□□□ -2.15
SPG11-223ENST00000560858 UBL5Q9BZL1 73 aa1.62□□□□□ -2.15
SPG11-223ENST00000560858 CELA1Q9UNI1 258 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms