RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 EPG5Q9HCE0 2579 aa-0.28□□□□□ -2.45
SPG11-222ENST00000560435 PDCD11Q14690 1871 aaKnown RBP-0.28□□□□□ -2.45
SPG11-222ENST00000560435 TRAV30A0A087WSZ9 112 aa-0.28□□□□□ -2.45
SPG11-222ENST00000560435 H0Y9P7 68 aa-0.28□□□□□ -2.45
SPG11-222ENST00000560435 H3BQF6 201 aa-0.28□□□□□ -2.45
SPG11-222ENST00000560435 GNGT2O14610 69 aa-0.28□□□□□ -2.45
SPG11-222ENST00000560435 DEFB135Q30KP9 77 aa-0.28□□□□□ -2.45
SPG11-222ENST00000560435 ALKAL2Q6UX46 152 aa-0.28□□□□□ -2.45
SPG11-222ENST00000560435 DEFB107AQ8IZN7 70 aa-0.28□□□□□ -2.45
SPG11-222ENST00000560435 SERP2Q8N6R1 65 aa-0.28□□□□□ -2.45
SPG11-222ENST00000560435 C14orf144Q96I85 54 aa-0.28□□□□□ -2.45
SPG11-222ENST00000560435 MRPL34Q9BQ48 92 aaKnown RBP-0.28□□□□□ -2.45
SPG11-222ENST00000560435 VAMP8Q9BV40 100 aa-0.28□□□□□ -2.45
SPG11-222ENST00000560435 LRRC37AA6NMS7 1700 aa-0.28□□□□□ -2.45
SPG11-222ENST00000560435 TARBP1Q13395 1621 aaKnown RBP-0.28□□□□□ -2.45
SPG11-222ENST00000560435 CC2D2AQ9P2K1 1620 aa-0.28□□□□□ -2.45
SPG11-222ENST00000560435 PCLOQ9Y6V0 5065 aa-0.28□□□□□ -2.45
SPG11-222ENST00000560435 SONP18583 2426 aaKnown RBP-0.28□□□□□ -2.45
SPG11-222ENST00000560435 NRXN1Q9ULB1 1477 aa-0.29□□□□□ -2.46
SPG11-222ENST00000560435 ANKRD11Q6UB99 2663 aaPredicted RBP-0.29□□□□□ -2.46
SPG11-222ENST00000560435 DMXL1Q9Y485 3027 aa-0.29□□□□□ -2.46
SPG11-222ENST00000560435 SPTBN4Q9H254 2564 aa-0.29□□□□□ -2.46
SPG11-222ENST00000560435 KIAA1551Q9HCM1 1747 aa-0.29□□□□□ -2.46
SPG11-222ENST00000560435 SHPRHQ149N8 1683 aa-0.29□□□□□ -2.46
SPG11-222ENST00000560435 TMEM218A2RU14 115 aa-0.29□□□□□ -2.46
SPG11-222ENST00000560435 MT-ATP8P03928 68 aa-0.29□□□□□ -2.46
SPG11-222ENST00000560435 S100PP25815 95 aa-0.29□□□□□ -2.46
SPG11-222ENST00000560435 ASIPP42127 132 aa-0.29□□□□□ -2.46
SPG11-222ENST00000560435 HMGN3Q15651 99 aa-0.29□□□□□ -2.46
SPG11-222ENST00000560435 PSMG4Q5JS54 123 aa-0.29□□□□□ -2.46
SPG11-222ENST00000560435 LELP1Q5T871 98 aa-0.29□□□□□ -2.46
SPG11-222ENST00000560435 HIGD1BQ9P298 99 aa-0.29□□□□□ -2.46
SPG11-222ENST00000560435 LAMA1P25391 3075 aa-0.29□□□□□ -2.46
SPG11-222ENST00000560435 PTPN23Q9H3S7 1636 aa-0.29□□□□□ -2.46
SPG11-222ENST00000560435 KALRNO60229 2985 aa-0.29□□□□□ -2.46
SPG11-222ENST00000560435 SAMD9Q5K651 1589 aa-0.29□□□□□ -2.46
SPG11-222ENST00000560435 TEX14Q8IWB6 1497 aa-0.29□□□□□ -2.46
SPG11-222ENST00000560435 RAPGEF2Q9Y4G8 1499 aa-0.29□□□□□ -2.46
SPG11-222ENST00000560435 CLIP1P30622 1438 aa-0.3□□□□□ -2.46
SPG11-222ENST00000560435 KNDC1Q76NI1 1749 aa-0.3□□□□□ -2.46
SPG11-222ENST00000560435 ABCA3Q99758 1704 aa-0.3□□□□□ -2.46
SPG11-222ENST00000560435 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.3□□□□□ -2.461e-6■■□□□ 14
SPG11-222ENST00000560435 ANKRD36BQ8N2N9 1353 aa-0.3□□□□□ -2.46
SPG11-222ENST00000560435 ADAMTS12P58397 1594 aa-0.3□□□□□ -2.46
SPG11-222ENST00000560435 TRBV7-7A0A0K0K1E9 115 aa-0.3□□□□□ -2.46
SPG11-222ENST00000560435 ATOX1O00244 68 aa-0.3□□□□□ -2.46
SPG11-222ENST00000560435 CCL22O00626 93 aa-0.3□□□□□ -2.46
SPG11-222ENST00000560435 MT1AP04731 61 aa-0.3□□□□□ -2.46
SPG11-222ENST00000560435 UQCRHP07919 91 aa-0.3□□□□□ -2.46
SPG11-222ENST00000560435 GNGT1P63211 74 aa-0.3□□□□□ -2.46
SPG11-222ENST00000560435 DEFB112Q30KQ8 113 aa-0.3□□□□□ -2.46
SPG11-222ENST00000560435 PMCHL2Q9BQD1 86 aa-0.3□□□□□ -2.46
SPG11-222ENST00000560435 PSENENQ9NZ42 101 aa-0.3□□□□□ -2.46
SPG11-222ENST00000560435 CDKN2A-AS1Q9UH64 79 aa-0.3□□□□□ -2.46
SPG11-222ENST00000560435 ABCC2Q92887 1545 aa-0.3□□□□□ -2.46
SPG11-222ENST00000560435 TEP1Q99973 2627 aaKnown RBP-0.3□□□□□ -2.46
SPG11-222ENST00000560435 DSPP15924 2871 aaKnown RBP-0.3□□□□□ -2.46
SPG11-222ENST00000560435 NBPF19A0A087WUL8 3843 aa-0.3□□□□□ -2.46
SPG11-222ENST00000560435 FAT1Q14517 4588 aa-0.3□□□□□ -2.46
SPG11-222ENST00000560435 KNL1Q8NG31 2342 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 FASNP49327 2511 aaKnown RBP-0.31□□□□□ -2.46
SPG11-222ENST00000560435 CUX1P39880 1505 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 NBEAQ8NFP9 2946 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 PKD1P98161 4303 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 SPTY2D1-AS1A0A0U1RR47 76 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 LINC00032P0C843 101 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 IGLC2P0DOY2 106 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 IGLC3P0DOY3 106 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 MT4P47944 62 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 RBP2P50120 134 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 KRTAP20-2Q3LI61 65 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 COX6B2Q6YFQ2 88 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 WFDC13Q8IUB5 93 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 ACBD7Q8N6N7 88 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 SPRR2FQ96RM1 72 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 TCEAL7Q9BRU2 100 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 DPY30Q9C005 99 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 UBE2D4Q9Y2X8 147 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 ANKRD36A6QL64 1941 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 NBASA2RRP1 2371 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 USH2AO75445 5202 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 CICQ96RK0 1608 aaPredicted RBP-0.31□□□□□ -2.46
SPG11-222ENST00000560435 FAT3Q8TDW7 4589 aa-0.31□□□□□ -2.46
SPG11-222ENST00000560435 SPG11Q96JI7 2443 aa-0.32□□□□□ -2.46
SPG11-222ENST00000560435 STARD9Q9P2P6 4700 aa-0.32□□□□□ -2.46
SPG11-222ENST00000560435 USP9YO00507 2555 aaPredicted RBP-0.32□□□□□ -2.46
SPG11-222ENST00000560435 EPRSP07814 1512 aaKnown RBP-0.32□□□□□ -2.46
SPG11-222ENST00000560435 WDR87Q6ZQQ6 2873 aa-0.32□□□□□ -2.46
SPG11-222ENST00000560435 MAGI2Q86UL8 1455 aa-0.32□□□□□ -2.46
SPG11-222ENST00000560435 D6R8Y8 96 aa-0.32□□□□□ -2.46
SPG11-222ENST00000560435 F8WEM9 126 aa-0.32□□□□□ -2.46
SPG11-222ENST00000560435 LEPROTL1O95214 131 aa-0.32□□□□□ -2.46
SPG11-222ENST00000560435 S100A10P60903 97 aa-0.32□□□□□ -2.46
SPG11-222ENST00000560435 MUSTN1Q8IVN3 82 aa-0.32□□□□□ -2.46
SPG11-222ENST00000560435 MON2Q7Z3U7 1717 aa-0.33□□□□□ -2.46
SPG11-222ENST00000560435 DNAH6Q9C0G6 4158 aa-0.33□□□□□ -2.46
SPG11-222ENST00000560435 C5P01031 1676 aa-0.33□□□□□ -2.46
SPG11-222ENST00000560435 FANCAO15360 1455 aa-0.33□□□□□ -2.46
SPG11-222ENST00000560435 FYCO1Q9BQS8 1478 aa-0.33□□□□□ -2.46
SPG11-222ENST00000560435 ATP6V1G2-DDX39BF2Z307 99 aa-0.33□□□□□ -2.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms