RNA–Protein interactions for RNA: ENST00000560371.5

TRAF3-208, Transcript of TNF receptor associated factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF3, Length 7,640 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-208ENST00000560371 Q6ZRU5 148 aa9.46□□□□□ -0.89
TRAF3-208ENST00000560371 C1orf195Q5TG92 126 aa9.46□□□□□ -0.89
TRAF3-208ENST00000560371 MKI67P46013 3256 aaKnown RBP9.46□□□□□ -0.9
TRAF3-208ENST00000560371 SOSTDC1Q6X4U4 206 aa9.46□□□□□ -0.9
TRAF3-208ENST00000560371 LINC01561Q8N1V8 128 aa9.45□□□□□ -0.9
TRAF3-208ENST00000560371 LINC01547P58512 204 aaPredicted RBP9.45□□□□□ -0.9
TRAF3-208ENST00000560371 ADAMTSL4-AS1Q5T5F5 129 aa9.45□□□□□ -0.9
TRAF3-208ENST00000560371 KRTAP24-1Q3LI83 254 aa9.45□□□□□ -0.9
TRAF3-208ENST00000560371 TSPEAR-AS2P59090 65 aa9.44□□□□□ -0.9
TRAF3-208ENST00000560371 SETXQ7Z333 2677 aaKnown RBP9.44□□□□□ -0.9
TRAF3-208ENST00000560371 URB1-AS1Q96HZ7 61 aa9.44□□□□□ -0.9
TRAF3-208ENST00000560371 TEX15Q9BXT5 2789 aa9.44□□□□□ -0.9
TRAF3-208ENST00000560371 C11orf72Q8NBR9 251 aa9.43□□□□□ -0.9
TRAF3-208ENST00000560371 STAB1Q9NY15 2570 aa9.43□□□□□ -0.9
TRAF3-208ENST00000560371 A0A087WYN8 130 aa9.42□□□□□ -0.9
TRAF3-208ENST00000560371 IGKV2D-30A0A075B6S6 120 aa9.42□□□□□ -0.9
TRAF3-208ENST00000560371 IGKV2-30P06310 120 aa9.42□□□□□ -0.9
TRAF3-208ENST00000560371 PSPHP1O15172 72 aa9.42□□□□□ -0.9
TRAF3-208ENST00000560371 PRUNE2Q8WUY3 3088 aa9.41□□□□□ -0.9
TRAF3-208ENST00000560371 CRYGAP11844 174 aa9.41□□□□□ -0.9
TRAF3-208ENST00000560371 LINC00575Q6W349 94 aa9.41□□□□□ -0.9
TRAF3-208ENST00000560371 A0A087WSZ3 146 aa9.4□□□□□ -0.9
TRAF3-208ENST00000560371 A8MTW9 85 aa9.4□□□□□ -0.9
TRAF3-208ENST00000560371 LINC00310P59036 64 aa9.4□□□□□ -0.9
TRAF3-208ENST00000560371 C7orf65Q6ZTY9 151 aa9.4□□□□□ -0.9
TRAF3-208ENST00000560371 CHD6Q8TD26 2715 aa9.4□□□□□ -0.9
TRAF3-208ENST00000560371 C22orf24Q9Y442 160 aa9.4□□□□□ -0.91
TRAF3-208ENST00000560371 LIMD2Q9BT23 127 aa9.4□□□□□ -0.91
TRAF3-208ENST00000560371 TEP1Q99973 2627 aaKnown RBP9.39□□□□□ -0.91
TRAF3-208ENST00000560371 LAMA3Q16787 3333 aa9.39□□□□□ -0.91
TRAF3-208ENST00000560371 XGP55808 180 aa9.38□□□□□ -0.91
TRAF3-208ENST00000560371 KIF25-AS1Q9Y6Z4 181 aa9.36□□□□□ -0.91
TRAF3-208ENST00000560371 H3BNG1 76 aa9.36□□□□□ -0.91
TRAF3-208ENST00000560371 H0Y9P7 68 aa9.36□□□□□ -0.91
TRAF3-208ENST00000560371 IGHV3OR16-9A0A0B4J2B5 98 aa9.35□□□□□ -0.91
TRAF3-208ENST00000560371 SMCR5Q8TEV8 140 aa9.35□□□□□ -0.91
TRAF3-208ENST00000560371 MAP1AP78559 2803 aaPredicted RBP9.35□□□□□ -0.91
TRAF3-208ENST00000560371 A0A096LNJ9 63 aa9.35□□□□□ -0.91
TRAF3-208ENST00000560371 COX7CP15954 63 aa9.35□□□□□ -0.91
TRAF3-208ENST00000560371 FAM229AH3BQW9 127 aa9.35□□□□□ -0.91
TRAF3-208ENST00000560371 MGAQ8IWI9 3026 aa9.34□□□□□ -0.91
TRAF3-208ENST00000560371 SPACA4Q8TDM5 124 aa9.34□□□□□ -0.91
TRAF3-208ENST00000560371 TRAV7A0A075B6U4 112 aa9.34□□□□□ -0.91
TRAF3-208ENST00000560371 C16orf90A8MZG2 172 aa9.32□□□□□ -0.92
TRAF3-208ENST00000560371 hDV103S1A0JD37 113 aa9.32□□□□□ -0.92
TRAF3-208ENST00000560371 HCG22E2RYF7 251 aa9.32□□□□□ -0.92
TRAF3-208ENST00000560371 FAM19A4Q96LR4 140 aa9.32□□□□□ -0.92
TRAF3-208ENST00000560371 Q9UF83 564 aa9.32□□□□□ -0.92
TRAF3-208ENST00000560371 CCDC179H3BU77 68 aa9.31□□□□□ -0.92
TRAF3-208ENST00000560371 Q8N3U1 123 aa9.31□□□□□ -0.92
TRAF3-208ENST00000560371 LINC00315P59091 139 aa9.31□□□□□ -0.92
TRAF3-208ENST00000560371 WWC2-AS2Q96NR7 200 aa9.29□□□□□ -0.92
TRAF3-208ENST00000560371 MOBPQ13875 183 aa9.29□□□□□ -0.92
TRAF3-208ENST00000560371 TRBV7-7A0A0K0K1E9 115 aa9.29□□□□□ -0.92
TRAF3-208ENST00000560371 NBDYA0A0U1RRE5 68 aa9.29□□□□□ -0.92
TRAF3-208ENST00000560371 LINC00167Q96N53 147 aa9.29□□□□□ -0.92
TRAF3-208ENST00000560371 BRCA2P51587 3418 aa9.29□□□□□ -0.92
TRAF3-208ENST00000560371 IGLV8-61A0A075B6I0 122 aa9.28□□□□□ -0.92
TRAF3-208ENST00000560371 SPINT4Q6UDR6 99 aa9.28□□□□□ -0.92
TRAF3-208ENST00000560371 Q8NAQ8 132 aa9.28□□□□□ -0.92
TRAF3-208ENST00000560371 XIRP2A4UGR9 3374 aa9.28□□□□□ -0.92
TRAF3-208ENST00000560371 C6orf48Q9UBA6 75 aa9.28□□□□□ -0.92
TRAF3-208ENST00000560371 IGLV5-39A0A0G2JS06 123 aa9.27□□□□□ -0.92
TRAF3-208ENST00000560371 KIAA0087Q14695 138 aa9.26□□□□□ -0.93
TRAF3-208ENST00000560371 WDFY4Q6ZS81 3184 aa9.26□□□□□ -0.93
TRAF3-208ENST00000560371 SMIM26A0A096LP01 95 aa9.26□□□□□ -0.93
TRAF3-208ENST00000560371 RTL8CO15255 209 aa9.25□□□□□ -0.93
TRAF3-208ENST00000560371 ACYP2P14621 99 aa9.25□□□□□ -0.93
TRAF3-208ENST00000560371 LINC00588Q9Y4M8 146 aa9.25□□□□□ -0.93
TRAF3-208ENST00000560371 SPAG11AQ6PDA7 123 aa9.25□□□□□ -0.93
TRAF3-208ENST00000560371 A0A087WVE0 104 aa9.24□□□□□ -0.93
TRAF3-208ENST00000560371 A0A1B0GU69 56 aa9.24□□□□□ -0.93
TRAF3-208ENST00000560371 J3QL48 77 aa9.24□□□□□ -0.93
TRAF3-208ENST00000560371 UNC79Q9P2D8 2635 aa9.23□□□□□ -0.93
TRAF3-208ENST00000560371 Q6ZRP5 223 aa9.23□□□□□ -0.93
TRAF3-208ENST00000560371 VPS13AQ96RL7 3174 aa9.22□□□□□ -0.93
TRAF3-208ENST00000560371 PHF5AQ7RTV0 110 aaKnown RBP9.22□□□□□ -0.93
TRAF3-208ENST00000560371 TYMSOSQ8TAI1 123 aa9.22□□□□□ -0.93
TRAF3-208ENST00000560371 CR1P17927 2039 aa9.21□□□□□ -0.94
TRAF3-208ENST00000560371 CHTF8P0CG12 524 aa9.21□□□□□ -0.94
TRAF3-208ENST00000560371 COX6B2Q6YFQ2 88 aa9.2□□□□□ -0.94
TRAF3-208ENST00000560371 LINC00846Q9NV44 126 aa9.19□□□□□ -0.94
TRAF3-208ENST00000560371 LINC01546A6NGU7 62 aa9.19□□□□□ -0.94
TRAF3-208ENST00000560371 C1orf64Q8NEQ6 169 aa9.19□□□□□ -0.94
TRAF3-208ENST00000560371 DNAH10OSP0CZ25 163 aa9.18□□□□□ -0.94
TRAF3-208ENST00000560371 IGLV5-45A0A087WSX0 123 aa9.17□□□□□ -0.94
TRAF3-208ENST00000560371 CXCL6P80162 114 aa9.17□□□□□ -0.94
TRAF3-208ENST00000560371 TRANK1O15050 2925 aa9.17□□□□□ -0.94
TRAF3-208ENST00000560371 HTTP42858 3142 aa9.16□□□□□ -0.94
TRAF3-208ENST00000560371 ZNF292O60281 2723 aa9.16□□□□□ -0.94
TRAF3-208ENST00000560371 TRIOO75962 3097 aa9.16□□□□□ -0.94
TRAF3-208ENST00000560371 NBEAL1Q6ZS30 2694 aa9.16□□□□□ -0.94
TRAF3-208ENST00000560371 COL6A5A8TX70 2615 aa9.14□□□□□ -0.95
TRAF3-208ENST00000560371 EPM2AB3EWF7 344 aa9.14□□□□□ -0.95
TRAF3-208ENST00000560371 SPATA3Q8NHX4 192 aa9.14□□□□□ -0.95
TRAF3-208ENST00000560371 GVQW2A0A096LPI5 108 aaPredicted RBP9.14□□□□□ -0.95
TRAF3-208ENST00000560371 Q6ZRX8 168 aa9.13□□□□□ -0.95
TRAF3-208ENST00000560371 K7EIL1 84 aa9.13□□□□□ -0.95
TRAF3-208ENST00000560371 DSPP15924 2871 aaKnown RBP9.13□□□□□ -0.95
TRAF3-208ENST00000560371 ELOF1P60002 83 aaKnown RBP9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms