RNA–Protein interactions for RNA: ENST00000560131.1

TPM1-222, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 537 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-222ENST00000560131 LYRM9A8MSI8 78 aa3.47□□□□□ -1.85
TPM1-222ENST00000560131 B4DSR2 109 aa3.47□□□□□ -1.85
TPM1-222ENST00000560131 IGKV4-1P06312 121 aa3.47□□□□□ -1.85
TPM1-222ENST00000560131 PRR4Q16378 134 aa3.47□□□□□ -1.85
TPM1-222ENST00000560131 LINC00612Q8N6U2 182 aa3.47□□□□□ -1.85
TPM1-222ENST00000560131 CYP4F30PQ9H0H9 118 aa3.47□□□□□ -1.85
TPM1-222ENST00000560131 COL6A3P12111 3177 aa3.47□□□□□ -1.85
TPM1-222ENST00000560131 OTOGLQ3ZCN5 2332 aa3.47□□□□□ -1.85
TPM1-222ENST00000560131 SPTBN1Q01082 2364 aaKnown RBP3.46□□□□□ -1.86
TPM1-222ENST00000560131 FRYLO94915 3013 aa3.46□□□□□ -1.86
TPM1-222ENST00000560131 PRM2P04554 102 aa3.46□□□□□ -1.86
TPM1-222ENST00000560131 CD164Q04900 197 aa3.46□□□□□ -1.86
TPM1-222ENST00000560131 ZCCHC13Q8WW36 166 aaKnown RBP3.46□□□□□ -1.86
TPM1-222ENST00000560131 ZNF702PQ9H963 129 aa3.46□□□□□ -1.86
TPM1-222ENST00000560131 PIEZO2Q9H5I5 2752 aa3.46□□□□□ -1.86
TPM1-222ENST00000560131 DSPP15924 2871 aaKnown RBP3.45□□□□□ -1.86
TPM1-222ENST00000560131 TNRC18O15417 2968 aaPredicted RBP3.45□□□□□ -1.86
TPM1-222ENST00000560131 M0R2N4 97 aa3.45□□□□□ -1.86
TPM1-222ENST00000560131 ELOF1P60002 83 aaKnown RBP3.45□□□□□ -1.86
TPM1-222ENST00000560131 FAM229BQ4G0N7 80 aa3.45□□□□□ -1.86
TPM1-222ENST00000560131 C10orf99Q6UWK7 81 aa3.45□□□□□ -1.86
TPM1-222ENST00000560131 Q6ZQY7 126 aa3.45□□□□□ -1.86
TPM1-222ENST00000560131 DIRC1Q969H9 104 aa3.45□□□□□ -1.86
TPM1-222ENST00000560131 COL6A6A6NMZ7 2263 aa3.45□□□□□ -1.86
TPM1-222ENST00000560131 TRGV4A0A0C4DH28 118 aa3.44□□□□□ -1.86
TPM1-222ENST00000560131 DAD1P61803 113 aa3.44□□□□□ -1.86
TPM1-222ENST00000560131 DEFB112Q30KQ8 113 aa3.44□□□□□ -1.86
TPM1-222ENST00000560131 CHCHD10Q8WYQ3 142 aaPredicted RBP3.44□□□□□ -1.86
TPM1-222ENST00000560131 ACACAQ13085 2346 aa3.44□□□□□ -1.86
TPM1-222ENST00000560131 CFAP54Q96N23 3096 aa3.43□□□□□ -1.86
TPM1-222ENST00000560131 IGLV8-61A0A075B6I0 122 aa3.43□□□□□ -1.86
TPM1-222ENST00000560131 TRGV2A0A075B6R0 118 aa3.43□□□□□ -1.86
TPM1-222ENST00000560131 NDUFB1O75438 58 aa3.43□□□□□ -1.86
TPM1-222ENST00000560131 PRR3P79522 188 aaKnown RBP3.43□□□□□ -1.86
TPM1-222ENST00000560131 NOP10Q9NPE3 64 aaKnown RBP3.43□□□□□ -1.86
TPM1-222ENST00000560131 VPS13AQ96RL7 3174 aa3.43□□□□□ -1.86
TPM1-222ENST00000560131 FREM2Q5SZK8 3169 aa3.42□□□□□ -1.86
TPM1-222ENST00000560131 SORL1Q92673 2214 aa3.42□□□□□ -1.86
TPM1-222ENST00000560131 IGLV5-48A0A075B6I7 105 aa3.42□□□□□ -1.86
TPM1-222ENST00000560131 ZNF73O43830 326 aaPredicted RBP3.42□□□□□ -1.86
TPM1-222ENST00000560131 GIG44P09565 113 aaPredicted RBP3.42□□□□□ -1.86
TPM1-222ENST00000560131 DEFB123Q8N688 67 aa3.42□□□□□ -1.86
TPM1-222ENST00000560131 Q8NDZ9 215 aa3.42□□□□□ -1.86
TPM1-222ENST00000560131 PRRC2CQ9Y520 2896 aaKnown RBP3.41□□□□□ -1.86
TPM1-222ENST00000560131 IGKV3OR2-268A0A0C4DH90 116 aa3.41□□□□□ -1.86
TPM1-222ENST00000560131 C1orf64Q8NEQ6 169 aa3.41□□□□□ -1.86
TPM1-222ENST00000560131 ETDCA0A1B0GVM5 59 aa3.4□□□□□ -1.87
TPM1-222ENST00000560131 H3BPC8 53 aa3.4□□□□□ -1.87
TPM1-222ENST00000560131 HIGD2BQ4VC39 106 aa3.4□□□□□ -1.87
TPM1-222ENST00000560131 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.4□□□□□ -1.87
TPM1-222ENST00000560131 SPANXA2-OT1Q8N9U9 137 aa3.4□□□□□ -1.87
TPM1-222ENST00000560131 CCL19Q99731 98 aa3.4□□□□□ -1.87
TPM1-222ENST00000560131 HIGD2AQ9BW72 106 aa3.4□□□□□ -1.87
TPM1-222ENST00000560131 CR1P17927 2039 aa3.39□□□□□ -1.87
TPM1-222ENST00000560131 TRAV22A0A0B4J277 110 aa3.39□□□□□ -1.87
TPM1-222ENST00000560131 M0R378 163 aa3.39□□□□□ -1.87
TPM1-222ENST00000560131 PSCAO43653 123 aa3.39□□□□□ -1.87
TPM1-222ENST00000560131 UBE2BP63146 152 aa3.39□□□□□ -1.87
TPM1-222ENST00000560131 REG3AQ06141 175 aa3.39□□□□□ -1.87
TPM1-222ENST00000560131 SPAG11BQ08648 103 aa3.39□□□□□ -1.87
TPM1-222ENST00000560131 LIMD2Q9BT23 127 aa3.39□□□□□ -1.87
TPM1-222ENST00000560131 PRO0255Q9UI72 69 aa3.39□□□□□ -1.87
TPM1-222ENST00000560131 PTPRZ1P23471 2315 aaPredicted RBP3.39□□□□□ -1.87
TPM1-222ENST00000560131 PRUNE2Q8WUY3 3088 aa3.39□□□□□ -1.87
TPM1-222ENST00000560131 CFAP47Q6ZTR5 3102 aa3.39□□□□□ -1.87
TPM1-222ENST00000560131 CYSRT1A8MQ03 144 aa3.38□□□□□ -1.87
TPM1-222ENST00000560131 NDUFS5O43920 106 aa3.38□□□□□ -1.87
TPM1-222ENST00000560131 UBE2AP49459 152 aa3.38□□□□□ -1.87
TPM1-222ENST00000560131 EGFEM1PQ0D2K5 195 aa3.38□□□□□ -1.87
TPM1-222ENST00000560131 DEFB136Q30KP8 78 aa3.38□□□□□ -1.87
TPM1-222ENST00000560131 C14orf177Q52M58 125 aa3.38□□□□□ -1.87
TPM1-222ENST00000560131 SCXQ7RTU7 201 aa3.38□□□□□ -1.87
TPM1-222ENST00000560131 LINC00269Q8N2A0 174 aa3.38□□□□□ -1.87
TPM1-222ENST00000560131 NKAPP1Q8N9T2 125 aa3.38□□□□□ -1.87
TPM1-222ENST00000560131 LINC01006Q8NI28 216 aa3.38□□□□□ -1.87
TPM1-222ENST00000560131 SPRR4Q96PI1 79 aa3.38□□□□□ -1.87
TPM1-222ENST00000560131 Q9BRP9 147 aa3.38□□□□□ -1.87
TPM1-222ENST00000560131 RETNQ9HD89 108 aa3.38□□□□□ -1.87
TPM1-222ENST00000560131 PRR34Q9NV39 138 aa3.38□□□□□ -1.87
TPM1-222ENST00000560131 ANKRD11Q6UB99 2663 aaPredicted RBP3.38□□□□□ -1.87
TPM1-222ENST00000560131 SPENQ96T58 3664 aaKnown RBP3.38□□□□□ -1.87
TPM1-222ENST00000560131 SPTAN1Q13813 2472 aaKnown RBP3.37□□□□□ -1.87
TPM1-222ENST00000560131 KRTAP16-1A8MUX0 517 aa3.37□□□□□ -1.87
TPM1-222ENST00000560131 C9orf116Q5BN46 136 aaPredicted RBP3.37□□□□□ -1.87
TPM1-222ENST00000560131 UNQ6190/PRO20217Q6UXQ8 127 aa3.37□□□□□ -1.87
TPM1-222ENST00000560131 KTN1-AS1Q86SY8 53 aa3.37□□□□□ -1.87
TPM1-222ENST00000560131 KCNQ1DNQ9H478 68 aa3.37□□□□□ -1.87
TPM1-222ENST00000560131 KALRNO60229 2985 aa3.37□□□□□ -1.87
TPM1-222ENST00000560131 TLN1Q9Y490 2541 aaKnown RBP3.37□□□□□ -1.87
TPM1-222ENST00000560131 HCG22E2RYF7 251 aa3.36□□□□□ -1.87
TPM1-222ENST00000560131 IGLV1-51P01701 117 aa3.36□□□□□ -1.87
TPM1-222ENST00000560131 SYCNQ0VAF6 134 aa3.36□□□□□ -1.87
TPM1-222ENST00000560131 Q5VV11 94 aa3.36□□□□□ -1.87
TPM1-222ENST00000560131 ATP11AUNQ6ZP68 121 aa3.36□□□□□ -1.87
TPM1-222ENST00000560131 PHF5AQ7RTV0 110 aaKnown RBP3.36□□□□□ -1.87
TPM1-222ENST00000560131 KRTAP7-1Q8IUC3 87 aa3.36□□□□□ -1.87
TPM1-222ENST00000560131 LINC00588Q9Y4M8 146 aa3.36□□□□□ -1.87
TPM1-222ENST00000560131 HRNRQ86YZ3 2850 aaPredicted RBP3.36□□□□□ -1.87
TPM1-222ENST00000560131 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.35□□□□□ -1.87
TPM1-222ENST00000560131 LOC101927531A0A1B0GV80 90 aa3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms