RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 CXCL5P42830 114 aa5.88□□□□□ -1.47
SCFD1-220ENST00000556486 HERVK_113P63121 156 aa5.88□□□□□ -1.47
SCFD1-220ENST00000556486 LOC389332A0A1B0GUA5 103 aa5.87□□□□□ -1.47
SCFD1-220ENST00000556486 G0S2P27469 103 aa5.87□□□□□ -1.47
SCFD1-220ENST00000556486 NDUFV3P56181 108 aaKnown RBP5.87□□□□□ -1.47
SCFD1-220ENST00000556486 ZC2HC1BQ5TFG8 222 aa5.87□□□□□ -1.47
SCFD1-220ENST00000556486 MRPL55Q7Z7F7 128 aaKnown RBP5.87□□□□□ -1.47
SCFD1-220ENST00000556486 TIMM17AQ99595 171 aa5.87□□□□□ -1.47
SCFD1-220ENST00000556486 XAGE1AQ9HD64 81 aa5.87□□□□□ -1.47
SCFD1-220ENST00000556486 NXT2Q9NPJ8 142 aaKnown RBP5.87□□□□□ -1.47
SCFD1-220ENST00000556486 CDKN2A-AS1Q9UH64 79 aa5.87□□□□□ -1.47
SCFD1-220ENST00000556486 A0A087X002 238 aa5.86□□□□□ -1.47
SCFD1-220ENST00000556486 BCE1O60756 84 aa5.86□□□□□ -1.47
SCFD1-220ENST00000556486 RPL28P46779 137 aaKnown RBP5.86□□□□□ -1.47
SCFD1-220ENST00000556486 TOMM7Q9P0U1 55 aa5.86□□□□□ -1.47
SCFD1-220ENST00000556486 MT-ND4LP03901 98 aa5.85□□□□□ -1.47
SCFD1-220ENST00000556486 KRTAP13-1Q8IUC0 172 aa5.85□□□□□ -1.47
SCFD1-220ENST00000556486 LINC00469Q8N7U9 141 aa5.85□□□□□ -1.47
SCFD1-220ENST00000556486 TOMM6Q96B49 74 aa5.85□□□□□ -1.47
SCFD1-220ENST00000556486 CRYGAP11844 174 aa5.84□□□□□ -1.47
SCFD1-220ENST00000556486 GEMIN7Q9H840 131 aaKnown RBP5.84□□□□□ -1.47
SCFD1-220ENST00000556486 A0A1B0GVG6 124 aa5.83□□□□□ -1.48
SCFD1-220ENST00000556486 LINC01549A6NIU2 74 aa5.83□□□□□ -1.48
SCFD1-220ENST00000556486 ATP5LO75964 103 aa5.83□□□□□ -1.48
SCFD1-220ENST00000556486 CTAG1AP78358 180 aa5.83□□□□□ -1.48
SCFD1-220ENST00000556486 PDZD11Q5EBL8 140 aa5.83□□□□□ -1.48
SCFD1-220ENST00000556486 TINCRA0A1B0GVN0 87 aa5.82□□□□□ -1.48
SCFD1-220ENST00000556486 LINC01546A6NGU7 62 aa5.82□□□□□ -1.48
SCFD1-220ENST00000556486 FAM229BQ4G0N7 80 aa5.82□□□□□ -1.48
SCFD1-220ENST00000556486 NOTCH2NLQ7Z3S9 236 aa5.82□□□□□ -1.48
SCFD1-220ENST00000556486 TYMSOSQ8TAI1 123 aa5.82□□□□□ -1.48
SCFD1-220ENST00000556486 LINC00167Q96N53 147 aa5.82□□□□□ -1.48
SCFD1-220ENST00000556486 IGKV2D-30A0A075B6S6 120 aa5.81□□□□□ -1.48
SCFD1-220ENST00000556486 OCR1Q9BZK8 76 aa5.81□□□□□ -1.48
SCFD1-220ENST00000556486 PPDPFQ9H3Y8 114 aa5.81□□□□□ -1.48
SCFD1-220ENST00000556486 KRTAP13-2Q52LG2 175 aa5.8□□□□□ -1.48
SCFD1-220ENST00000556486 COX7B2Q8TF08 81 aa5.8□□□□□ -1.48
SCFD1-220ENST00000556486 ANAPC11Q9NYG5 84 aa5.8□□□□□ -1.48
SCFD1-220ENST00000556486 TRAV9-1A0A075B6T8 112 aa5.79□□□□□ -1.48
SCFD1-220ENST00000556486 RPL37AP8A6NKH3 93 aa5.79□□□□□ -1.48
SCFD1-220ENST00000556486 TPRXLQ17RH7 258 aa5.79□□□□□ -1.48
SCFD1-220ENST00000556486 MTURNQ8N3F0 131 aa5.79□□□□□ -1.48
SCFD1-220ENST00000556486 SCGB3A1Q96QR1 104 aa5.79□□□□□ -1.48
SCFD1-220ENST00000556486 CST9LQ9H4G1 147 aa5.79□□□□□ -1.48
SCFD1-220ENST00000556486 ADCYAP1P18509 176 aa5.78□□□□□ -1.48
SCFD1-220ENST00000556486 Q8N9P0 234 aaPredicted RBP5.78□□□□□ -1.48
SCFD1-220ENST00000556486 NKAPP1Q8N9T2 125 aa5.77□□□□□ -1.49
SCFD1-220ENST00000556486 LITAFQ99732 161 aa5.77□□□□□ -1.49
SCFD1-220ENST00000556486 UBE2AP49459 152 aa5.76□□□□□ -1.49
SCFD1-220ENST00000556486 PMVKQ15126 192 aa5.76□□□□□ -1.49
SCFD1-220ENST00000556486 LINC00304Q8N9R0 145 aa5.76□□□□□ -1.49
SCFD1-220ENST00000556486 Q8NBF4 154 aa5.76□□□□□ -1.49
SCFD1-220ENST00000556486 GNB1LQ9BYB4 327 aa5.76□□□□□ -1.49
SCFD1-220ENST00000556486 IGLV7-46A0A075B6I9 117 aa5.75□□□□□ -1.49
SCFD1-220ENST00000556486 H3BRM9 83 aa5.75□□□□□ -1.49
SCFD1-220ENST00000556486 SPINK8P0C7L1 97 aa5.75□□□□□ -1.49
SCFD1-220ENST00000556486 COX17Q14061 63 aa5.75□□□□□ -1.49
SCFD1-220ENST00000556486 IGLC3P0DOY3 106 aa5.74□□□□□ -1.49
SCFD1-220ENST00000556486 RAB5BP61020 215 aa5.74□□□□□ -1.49
SCFD1-220ENST00000556486 RAB14P61106 215 aa5.74□□□□□ -1.49
SCFD1-220ENST00000556486 KRTAP4-1Q9BYQ7 146 aa5.74□□□□□ -1.49
SCFD1-220ENST00000556486 TMEM126AQ9H061 195 aa5.74□□□□□ -1.49
SCFD1-220ENST00000556486 IGKV2-28A0A075B6P5 120 aa5.73□□□□□ -1.49
SCFD1-220ENST00000556486 IGKV2D-26A0A0A0MRZ7 120 aa5.73□□□□□ -1.49
SCFD1-220ENST00000556486 E9PLD3 99 aa5.73□□□□□ -1.49
SCFD1-220ENST00000556486 IGKV2D-28P01615 120 aa5.73□□□□□ -1.49
SCFD1-220ENST00000556486 COX19Q49B96 90 aa5.73□□□□□ -1.49
SCFD1-220ENST00000556486 CLLU1Q5K131 121 aa5.73□□□□□ -1.49
SCFD1-220ENST00000556486 SFTA2Q6UW10 78 aa5.73□□□□□ -1.49
SCFD1-220ENST00000556486 SND1-IT1Q9HBX3 110 aa5.73□□□□□ -1.49
SCFD1-220ENST00000556486 M0R378 163 aa5.72□□□□□ -1.49
SCFD1-220ENST00000556486 PRLHP81277 87 aa5.72□□□□□ -1.49
SCFD1-220ENST00000556486 PLEKHB2Q96CS7 222 aa5.72□□□□□ -1.49
SCFD1-220ENST00000556486 ERG28Q9UKR5 140 aa5.72□□□□□ -1.49
SCFD1-220ENST00000556486 A0A096LNJ9 63 aa5.71□□□□□ -1.5
SCFD1-220ENST00000556486 TMEM218A2RU14 115 aa5.71□□□□□ -1.5
SCFD1-220ENST00000556486 SCO1O75880 301 aa5.71□□□□□ -1.5
SCFD1-220ENST00000556486 ZNF22P17026 224 aaPredicted RBP5.71□□□□□ -1.5
SCFD1-220ENST00000556486 PFN2P35080 140 aa5.71□□□□□ -1.5
SCFD1-220ENST00000556486 TMEM238C9JI98 176 aa5.7□□□□□ -1.5
SCFD1-220ENST00000556486 SPAG11AQ6PDA7 123 aa5.7□□□□□ -1.5
SCFD1-220ENST00000556486 FA2HQ7L5A8 372 aa5.7□□□□□ -1.5
SCFD1-220ENST00000556486 FAM19A1Q7Z5A9 133 aa5.7□□□□□ -1.5
SCFD1-220ENST00000556486 Q8NDZ9 215 aa5.7□□□□□ -1.5
SCFD1-220ENST00000556486 SMCO4Q9NRQ5 59 aa5.7□□□□□ -1.5
SCFD1-220ENST00000556486 S100PP25815 95 aa5.69□□□□□ -1.5
SCFD1-220ENST00000556486 FP248Q71RG6 208 aaPredicted RBP5.69□□□□□ -1.5
SCFD1-220ENST00000556486 ZNF625Q96I27 306 aaPredicted RBP5.69□□□□□ -1.5
SCFD1-220ENST00000556486 SEC11CQ9BY50 192 aa5.69□□□□□ -1.5
SCFD1-220ENST00000556486 CBLN2Q8IUK8 224 aa5.68□□□□□ -1.5
SCFD1-220ENST00000556486 A0A1B0GWB2 263 aa5.67□□□□□ -1.5
SCFD1-220ENST00000556486 CFC1BP0CG36 223 aa5.67□□□□□ -1.5
SCFD1-220ENST00000556486 CFC1P0CG37 223 aa5.67□□□□□ -1.5
SCFD1-220ENST00000556486 C3orf22Q8N5N4 141 aa5.67□□□□□ -1.5
SCFD1-220ENST00000556486 SPRR4Q96PI1 79 aa5.67□□□□□ -1.5
SCFD1-220ENST00000556486 C11orf86A6NJI1 115 aa5.66□□□□□ -1.5
SCFD1-220ENST00000556486 HBDP02042 147 aa5.66□□□□□ -1.5
SCFD1-220ENST00000556486 LINC00614P0C842 121 aa5.66□□□□□ -1.5
SCFD1-220ENST00000556486 FABP9Q0Z7S8 132 aa5.66□□□□□ -1.5
SCFD1-220ENST00000556486 C18orf32Q8TCD1 76 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms