RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 PLEKHH2Q8IVE3 1493 aa-0.64□□□□□ -2.51
SCFD1-218ENST00000556256 A0A1B0GWA3 101 aa-0.64□□□□□ -2.51
SCFD1-218ENST00000556256 KNDC1Q76NI1 1749 aa-0.64□□□□□ -2.51
SCFD1-218ENST00000556256 TOP2BQ02880 1626 aa-0.64□□□□□ -2.51
SCFD1-218ENST00000556256 ACACAQ13085 2346 aa-0.65□□□□□ -2.51
SCFD1-218ENST00000556256 PZPP20742 1482 aa-0.65□□□□□ -2.51
SCFD1-218ENST00000556256 NKTRP30414 1462 aaKnown RBP-0.65□□□□□ -2.51
SCFD1-218ENST00000556256 ANK3Q12955 4377 aaKnown RBP-0.65□□□□□ -2.51
SCFD1-218ENST00000556256 TRAPPC2P0DI81 140 aa-0.65□□□□□ -2.51
SCFD1-218ENST00000556256 TRAPPC2BP0DI82 140 aa-0.65□□□□□ -2.51
SCFD1-218ENST00000556256 SAA2P0DJI9 122 aaPredicted RBP-0.65□□□□□ -2.51
SCFD1-218ENST00000556256 SEC11AP67812 179 aa-0.65□□□□□ -2.51
SCFD1-218ENST00000556256 DNAH2Q9P225 4427 aa-0.65□□□□□ -2.51
SCFD1-218ENST00000556256 MAPKBP1O60336 1514 aa-0.65□□□□□ -2.51
SCFD1-218ENST00000556256 SLIT1O75093 1534 aa-0.65□□□□□ -2.51
SCFD1-218ENST00000556256 ARHGAP5Q13017 1502 aa-0.65□□□□□ -2.51
SCFD1-218ENST00000556256 VPS13BQ7Z7G8 4022 aa-0.65□□□□□ -2.51
SCFD1-218ENST00000556256 BIRC6Q9NR09 4857 aa-0.66□□□□□ -2.51
SCFD1-218ENST00000556256 CHD1O14646 1710 aa-0.66□□□□□ -2.51
SCFD1-218ENST00000556256 A0A087WVE0 104 aa-0.66□□□□□ -2.52
SCFD1-218ENST00000556256 A0A1B0GU69 56 aa-0.66□□□□□ -2.52
SCFD1-218ENST00000556256 HSD52Q0P140 79 aa-0.66□□□□□ -2.52
SCFD1-218ENST00000556256 C9orf62Q8N4C0 152 aa-0.66□□□□□ -2.52
SCFD1-218ENST00000556256 RGPD2P0DJD1 1756 aa-0.66□□□□□ -2.52
SCFD1-218ENST00000556256 NRKQ7Z2Y5 1582 aa-0.66□□□□□ -2.52
SCFD1-218ENST00000556256 DNAH1Q9P2D7 4330 aa-0.67□□□□□ -2.52
SCFD1-218ENST00000556256 LINC00587B1AMM8 73 aa-0.67□□□□□ -2.52
SCFD1-218ENST00000556256 S100A1P23297 94 aa-0.67□□□□□ -2.52
SCFD1-218ENST00000556256 KRTAP20-1Q3LI63 56 aa-0.67□□□□□ -2.52
SCFD1-218ENST00000556256 TMEM203Q969S6 136 aa-0.67□□□□□ -2.52
SCFD1-218ENST00000556256 C12orf57Q99622 126 aa-0.67□□□□□ -2.52
SCFD1-218ENST00000556256 KIF20BQ96Q89 1820 aa-0.67□□□□□ -2.52
SCFD1-218ENST00000556256 ABCA3Q99758 1704 aa-0.67□□□□□ -2.52
SCFD1-218ENST00000556256 KIAA1551Q9HCM1 1747 aa-0.67□□□□□ -2.52
SCFD1-218ENST00000556256 CC2D2AQ9P2K1 1620 aa-0.67□□□□□ -2.52
SCFD1-218ENST00000556256 A0A0C4DFX4 3053 aa-0.68□□□□□ -2.52
SCFD1-218ENST00000556256 CRYM-AS1A6NIL9 109 aa-0.68□□□□□ -2.52
SCFD1-218ENST00000556256 EIF4G3O43432 1585 aaKnown RBP-0.68□□□□□ -2.52
SCFD1-218ENST00000556256 ADAMTS12P58397 1594 aa-0.68□□□□□ -2.52
SCFD1-218ENST00000556256 SPHKAPQ2M3C7 1700 aa-0.68□□□□□ -2.52
SCFD1-218ENST00000556256 SPRR2FQ96RM1 72 aa-0.68□□□□□ -2.52
SCFD1-218ENST00000556256 GNG8Q9UK08 70 aa-0.68□□□□□ -2.52
SCFD1-218ENST00000556256 TARBP1Q13395 1621 aaKnown RBP-0.68□□□□□ -2.52
SCFD1-218ENST00000556256 CCDC168Q8NDH2 2452 aa-0.69□□□□□ -2.52
SCFD1-218ENST00000556256 MON2Q7Z3U7 1717 aa-0.69□□□□□ -2.52
SCFD1-218ENST00000556256 BCORQ6W2J9 1755 aa-0.69□□□□□ -2.52
SCFD1-218ENST00000556256 C7orf77A4D0Y5 90 aa-0.69□□□□□ -2.52
SCFD1-218ENST00000556256 I3L3M4 83 aa-0.69□□□□□ -2.52
SCFD1-218ENST00000556256 SNCAP37840 140 aa-0.69□□□□□ -2.52
SCFD1-218ENST00000556256 ASIPP42127 132 aa-0.69□□□□□ -2.52
SCFD1-218ENST00000556256 C6orf201Q7Z4U5 140 aa-0.69□□□□□ -2.52
SCFD1-218ENST00000556256 DEFB107AQ8IZN7 70 aa-0.69□□□□□ -2.52
SCFD1-218ENST00000556256 MRPL34Q9BQ48 92 aaKnown RBP-0.69□□□□□ -2.52
SCFD1-218ENST00000556256 PTPN23Q9H3S7 1636 aa-0.69□□□□□ -2.52
SCFD1-218ENST00000556256 SACSQ9NZJ4 4579 aa-0.69□□□□□ -2.52
SCFD1-218ENST00000556256 COL6A5A8TX70 2615 aa-0.69□□□□□ -2.52
SCFD1-218ENST00000556256 ANKRD11Q6UB99 2663 aaPredicted RBP-0.7□□□□□ -2.52
SCFD1-218ENST00000556256 LRRK2Q5S007 2527 aa-0.7□□□□□ -2.52
SCFD1-218ENST00000556256 FAM186AA6NE01 2351 aa-0.7□□□□□ -2.52
SCFD1-218ENST00000556256 hADV29S1A0JD25 119 aa-0.7□□□□□ -2.52
SCFD1-218ENST00000556256 TMEM262E9PQX1 116 aa-0.7□□□□□ -2.52
SCFD1-218ENST00000556256 MT1AP04731 61 aa-0.7□□□□□ -2.52
SCFD1-218ENST00000556256 KRTDAPP60985 99 aa-0.7□□□□□ -2.52
SCFD1-218ENST00000556256 MRPS10P82664 201 aaKnown RBP-0.7□□□□□ -2.52
SCFD1-218ENST00000556256 CGREF1Q99674 301 aa-0.7□□□□□ -2.52
SCFD1-218ENST00000556256 SHPRHQ149N8 1683 aa-0.7□□□□□ -2.52
SCFD1-218ENST00000556256 MYH4Q9Y623 1939 aa-0.7□□□□□ -2.52
SCFD1-218ENST00000556256 LRRC37AA6NMS7 1700 aa-0.7□□□□□ -2.52
SCFD1-218ENST00000556256 GCN1Q92616 2671 aaKnown RBP-0.71□□□□□ -2.52
SCFD1-218ENST00000556256 ABCC5O15440 1437 aa-0.71□□□□□ -2.52
SCFD1-218ENST00000556256 NCOA3Q9Y6Q9 1424 aa-0.71□□□□□ -2.52
SCFD1-218ENST00000556256 TOPAZ1Q8N9V7 1692 aa-0.71□□□□□ -2.52
SCFD1-218ENST00000556256 SARNPP82979 210 aaKnown RBP-0.71□□□□□ -2.52
SCFD1-218ENST00000556256 HEPN1Q6WQI6 88 aa-0.71□□□□□ -2.52
SCFD1-218ENST00000556256 WFDC13Q8IUB5 93 aa-0.71□□□□□ -2.52
SCFD1-218ENST00000556256 NBEAQ8NFP9 2946 aa-0.71□□□□□ -2.52
SCFD1-218ENST00000556256 TROQ12816 1431 aaPredicted RBP-0.72□□□□□ -2.52
SCFD1-218ENST00000556256 EDC4Q6P2E9 1401 aaKnown RBP-0.72□□□□□ -2.52
SCFD1-218ENST00000556256 CCDC141Q6ZP82 1450 aa-0.72□□□□□ -2.52
SCFD1-218ENST00000556256 A0A0G2JND7 137 aa-0.72□□□□□ -2.52
SCFD1-218ENST00000556256 H0Y9P7 68 aa-0.72□□□□□ -2.52
SCFD1-218ENST00000556256 RIF1Q5UIP0 2472 aaKnown RBP-0.72□□□□□ -2.52
SCFD1-218ENST00000556256 PKD1L2Q7Z442 2459 aa-0.72□□□□□ -2.52
SCFD1-218ENST00000556256 PLECQ15149 4684 aaKnown RBP-0.72□□□□□ -2.53
SCFD1-218ENST00000556256 C5P01031 1676 aa-0.72□□□□□ -2.53
SCFD1-218ENST00000556256 MTORP42345 2549 aa-0.73□□□□□ -2.53
SCFD1-218ENST00000556256 CUX1P39880 1505 aa-0.73□□□□□ -2.53
SCFD1-218ENST00000556256 UBR3Q6ZT12 1888 aa-0.73□□□□□ -2.53
SCFD1-218ENST00000556256 DNHD1Q96M86 4753 aa-0.73□□□□□ -2.53
SCFD1-218ENST00000556256 DNAH8Q96JB1 4490 aa-0.73□□□□□ -2.53
SCFD1-218ENST00000556256 CICQ96RK0 1608 aaPredicted RBP-0.73□□□□□ -2.53
SCFD1-218ENST00000556256 GNGT1P63211 74 aa-0.73□□□□□ -2.53
SCFD1-218ENST00000556256 TRAV30A0A087WSZ9 112 aa-0.74□□□□□ -2.53
SCFD1-218ENST00000556256 H0YGG7 62 aa-0.74□□□□□ -2.53
SCFD1-218ENST00000556256 H3BQF6 201 aa-0.74□□□□□ -2.53
SCFD1-218ENST00000556256 ARMS2P0C7Q2 107 aa-0.74□□□□□ -2.53
SCFD1-218ENST00000556256 GTF2H5Q6ZYL4 71 aa-0.74□□□□□ -2.53
SCFD1-218ENST00000556256 HIGD1BQ9P298 99 aa-0.74□□□□□ -2.53
SCFD1-218ENST00000556256 CACFD1Q9UGQ2 172 aa-0.74□□□□□ -2.53
SCFD1-218ENST00000556256 CDKN2A-AS1Q9UH64 79 aa-0.74□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms