RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 KRTAP1-3Q8IUG1 177 aa10.45□□□□□ -0.74
CUX1-214ENST00000550008 HRCT1Q6UXD1 115 aa10.45□□□□□ -0.74
CUX1-214ENST00000550008 A0A1B0GUV1 79 aa10.44□□□□□ -0.74
CUX1-214ENST00000550008 TRBV10-3A0A0K0K1G6 114 aa10.44□□□□□ -0.74
CUX1-214ENST00000550008 FAM236DA0A1B0GTK5 79 aa10.44□□□□□ -0.74
CUX1-214ENST00000550008 FAM236CP0DP71 79 aa10.44□□□□□ -0.74
CUX1-214ENST00000550008 SMCPP49901 116 aaPredicted RBP10.44□□□□□ -0.74
CUX1-214ENST00000550008 KLK5Q9Y337 293 aaPredicted RBP10.44□□□□□ -0.74
CUX1-214ENST00000550008 PPDPFQ9H3Y8 114 aa10.43□□□□□ -0.74
CUX1-214ENST00000550008 ZFHX4Q86UP3 3567 aa10.43□□□□□ -0.74
CUX1-214ENST00000550008 ENHOQ6UWT2 76 aa10.42□□□□□ -0.74
CUX1-214ENST00000550008 C3orf84H3BNL1 204 aa10.42□□□□□ -0.74
CUX1-214ENST00000550008 EIF4EBP3O60516 100 aaPredicted RBP10.42□□□□□ -0.74
CUX1-214ENST00000550008 RPL28P46779 137 aaKnown RBP10.42□□□□□ -0.74
CUX1-214ENST00000550008 FAM19A1Q7Z5A9 133 aa10.42□□□□□ -0.74
CUX1-214ENST00000550008 SERP2Q8N6R1 65 aa10.41□□□□□ -0.74
CUX1-214ENST00000550008 WFDC9Q8NEX5 89 aa10.41□□□□□ -0.74
CUX1-214ENST00000550008 ZNF73O43830 326 aaPredicted RBP10.41□□□□□ -0.74
CUX1-214ENST00000550008 KRTAP24-1Q3LI83 254 aa10.41□□□□□ -0.74
CUX1-214ENST00000550008 MPLKIPQ8TAP9 179 aa10.41□□□□□ -0.74
CUX1-214ENST00000550008 LOC107984640A0A0U1RRK4 108 aa10.4□□□□□ -0.74
CUX1-214ENST00000550008 V9GYY9 64 aa10.4□□□□□ -0.74
CUX1-214ENST00000550008 USP17L23D6RBM5 183 aa10.4□□□□□ -0.75
CUX1-214ENST00000550008 GIG44P09565 113 aaPredicted RBP10.4□□□□□ -0.75
CUX1-214ENST00000550008 CCKP06307 115 aa10.39□□□□□ -0.75
CUX1-214ENST00000550008 COX17Q14061 63 aa10.39□□□□□ -0.75
CUX1-214ENST00000550008 UPK3BQ9BT76 320 aa10.39□□□□□ -0.75
CUX1-214ENST00000550008 M0R378 163 aa10.38□□□□□ -0.75
CUX1-214ENST00000550008 KRTAP10-3P60369 221 aa10.38□□□□□ -0.75
CUX1-214ENST00000550008 C10orf25Q5T742 122 aa10.37□□□□□ -0.75
CUX1-214ENST00000550008 NF1P21359 2839 aa10.37□□□□□ -0.75
CUX1-214ENST00000550008 IGLV5-45A0A087WSX0 123 aa10.37□□□□□ -0.75
CUX1-214ENST00000550008 PRO0461Q9UI25 63 aa10.36□□□□□ -0.75
CUX1-214ENST00000550008 Q6ZRU5 148 aa10.36□□□□□ -0.75
CUX1-214ENST00000550008 Q8N814 137 aa10.35□□□□□ -0.75
CUX1-214ENST00000550008 CSNK1G2-AS1Q8NCQ2 148 aa10.35□□□□□ -0.75
CUX1-214ENST00000550008 C19orf73Q9NVV2 129 aa10.35□□□□□ -0.75
CUX1-214ENST00000550008 KRTAP1-1Q07627 177 aa10.35□□□□□ -0.75
CUX1-214ENST00000550008 ESRGQ1W209 222 aa10.35□□□□□ -0.75
CUX1-214ENST00000550008 CELSR2Q9HCU4 2923 aa10.35□□□□□ -0.75
CUX1-214ENST00000550008 HRNRQ86YZ3 2850 aaPredicted RBP10.34□□□□□ -0.75
CUX1-214ENST00000550008 BPY2O14599 106 aa10.34□□□□□ -0.75
CUX1-214ENST00000550008 EGFEM1PQ0D2K5 195 aa10.34□□□□□ -0.75
CUX1-214ENST00000550008 NSD1Q96L73 2696 aaPredicted RBP10.34□□□□□ -0.75
CUX1-214ENST00000550008 A0A087WVE0 104 aa10.34□□□□□ -0.75
CUX1-214ENST00000550008 DCHS2Q6V1P9 2916 aa10.34□□□□□ -0.75
CUX1-214ENST00000550008 FAM218AQ96MZ4 157 aa10.33□□□□□ -0.76
CUX1-214ENST00000550008 FAM240AA0A1B0GVK7 77 aa10.33□□□□□ -0.76
CUX1-214ENST00000550008 NDUFS5O43920 106 aa10.33□□□□□ -0.76
CUX1-214ENST00000550008 Q8NAQ8 132 aa10.33□□□□□ -0.76
CUX1-214ENST00000550008 SPATA3Q8NHX4 192 aa10.33□□□□□ -0.76
CUX1-214ENST00000550008 LITAFQ99732 161 aa10.33□□□□□ -0.76
CUX1-214ENST00000550008 PDE6GP18545 87 aa10.32□□□□□ -0.76
CUX1-214ENST00000550008 CR1P17927 2039 aa10.31□□□□□ -0.76
CUX1-214ENST00000550008 SBSPONQ8IVN8 264 aa10.31□□□□□ -0.76
CUX1-214ENST00000550008 NDUFC2-KCTD14E9PQ53 114 aa10.3□□□□□ -0.76
CUX1-214ENST00000550008 PLAC8L1A1L4L8 177 aa10.3□□□□□ -0.76
CUX1-214ENST00000550008 FBN2P35556 2912 aa10.3□□□□□ -0.76
CUX1-214ENST00000550008 SNURFQ9Y675 71 aa10.29□□□□□ -0.76
CUX1-214ENST00000550008 H3BQ85 93 aa10.29□□□□□ -0.76
CUX1-214ENST00000550008 C14orf177Q52M58 125 aa10.29□□□□□ -0.76
CUX1-214ENST00000550008 LRCOL1A6NCL2 159 aa10.28□□□□□ -0.76
CUX1-214ENST00000550008 C1orf195Q5TG92 126 aa10.28□□□□□ -0.76
CUX1-214ENST00000550008 APCP25054 2843 aa10.27□□□□□ -0.77
CUX1-214ENST00000550008 H0Y9J4 135 aa10.26□□□□□ -0.77
CUX1-214ENST00000550008 C6orf48Q9UBA6 75 aa10.26□□□□□ -0.77
CUX1-214ENST00000550008 ATP5EP2Q5VTU8 51 aa10.25□□□□□ -0.77
CUX1-214ENST00000550008 BAHCC1Q9P281 2608 aa10.25□□□□□ -0.77
CUX1-214ENST00000550008 LINC00846Q9NV44 126 aa10.25□□□□□ -0.77
CUX1-214ENST00000550008 MRPL55Q7Z7F7 128 aaKnown RBP10.24□□□□□ -0.77
CUX1-214ENST00000550008 SPTSSBQ8NFR3 76 aa10.24□□□□□ -0.77
CUX1-214ENST00000550008 B9D2Q9BPU9 175 aa10.24□□□□□ -0.77
CUX1-214ENST00000550008 LY6G6CO95867 125 aa10.24□□□□□ -0.77
CUX1-214ENST00000550008 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.24□□□□□ -0.77
CUX1-214ENST00000550008 SMIM26A0A096LP01 95 aa10.22□□□□□ -0.77
CUX1-214ENST00000550008 LINC00575Q6W349 94 aa10.22□□□□□ -0.77
CUX1-214ENST00000550008 IL17DQ8TAD2 202 aa10.2□□□□□ -0.78
CUX1-214ENST00000550008 Q6JHZ5 121 aa10.2□□□□□ -0.78
CUX1-214ENST00000550008 MUC7Q8TAX7 377 aa10.2□□□□□ -0.78
CUX1-214ENST00000550008 NDUFB1O75438 58 aa10.2□□□□□ -0.78
CUX1-214ENST00000550008 DHRS4-AS1Q9P1J3 65 aa10.19□□□□□ -0.78
CUX1-214ENST00000550008 KRTAP10-11P60412 298 aa10.19□□□□□ -0.78
CUX1-214ENST00000550008 MP68P56378 58 aa10.18□□□□□ -0.78
CUX1-214ENST00000550008 LINC01556Q5JQF7 62 aa10.17□□□□□ -0.78
CUX1-214ENST00000550008 LINC01561Q8N1V8 128 aa10.17□□□□□ -0.78
CUX1-214ENST00000550008 TRBV7-7A0A0K0K1E9 115 aa10.17□□□□□ -0.78
CUX1-214ENST00000550008 WFDC13Q8IUB5 93 aa10.17□□□□□ -0.78
CUX1-214ENST00000550008 C2orf48Q96LS8 159 aa10.17□□□□□ -0.78
CUX1-214ENST00000550008 PRLHP81277 87 aa10.17□□□□□ -0.78
CUX1-214ENST00000550008 HIVEP1P15822 2718 aa10.16□□□□□ -0.78
CUX1-214ENST00000550008 IGLV9-49A0A0B4J1Y8 123 aa10.16□□□□□ -0.78
CUX1-214ENST00000550008 SERP1Q9Y6X1 66 aa10.16□□□□□ -0.78
CUX1-214ENST00000550008 NDUFC1O43677 76 aa10.15□□□□□ -0.78
CUX1-214ENST00000550008 C1orf137Q5JT78 98 aa10.14□□□□□ -0.79
CUX1-214ENST00000550008 C7orf33Q8WU49 177 aa10.14□□□□□ -0.79
CUX1-214ENST00000550008 SPINK6Q6UWN8 80 aa10.14□□□□□ -0.79
CUX1-214ENST00000550008 DEFB116Q30KQ4 102 aa10.13□□□□□ -0.79
CUX1-214ENST00000550008 C22orf24Q9Y442 160 aa10.12□□□□□ -0.79
CUX1-214ENST00000550008 LINC00588Q9Y4M8 146 aa10.12□□□□□ -0.79
CUX1-214ENST00000550008 C4orf26Q17RF5 130 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 178.2 ms