RNA–Protein interactions for RNA: ENST00000547856.5

RAPGEF3-216, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 2,659 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-216ENST00000547856 FUSP35637 526 aaKnown RBP eCLIP9.82□□□□□ -0.84
RAPGEF3-216ENST00000547856 TRBV6-8A0A0A6YYG3 113 aa9.81□□□□□ -0.84
RAPGEF3-216ENST00000547856 NF1P21359 2839 aa9.81□□□□□ -0.84
RAPGEF3-216ENST00000547856 LINC00269Q8N2A0 174 aa9.8□□□□□ -0.84
RAPGEF3-216ENST00000547856 MUC7Q8TAX7 377 aa9.8□□□□□ -0.84
RAPGEF3-216ENST00000547856 HIGD2AQ9BW72 106 aa9.8□□□□□ -0.84
RAPGEF3-216ENST00000547856 ITPR3Q14573 2671 aa9.8□□□□□ -0.84
RAPGEF3-216ENST00000547856 PRYO14603 147 aa9.8□□□□□ -0.84
RAPGEF3-216ENST00000547856 DEFB113Q30KQ7 82 aa9.79□□□□□ -0.84
RAPGEF3-216ENST00000547856 C11orf44Q8N8P7 122 aa9.79□□□□□ -0.84
RAPGEF3-216ENST00000547856 SONP18583 2426 aaKnown RBP9.79□□□□□ -0.84
RAPGEF3-216ENST00000547856 TENM4Q6N022 2769 aa9.78□□□□□ -0.84
RAPGEF3-216ENST00000547856 CHD6Q8TD26 2715 aa9.78□□□□□ -0.84
RAPGEF3-216ENST00000547856 WNK1Q9H4A3 2382 aa9.78□□□□□ -0.84
RAPGEF3-216ENST00000547856 IGLV10-54A0A075B6I4 117 aa9.78□□□□□ -0.84
RAPGEF3-216ENST00000547856 Q8IZM0 81 aa9.78□□□□□ -0.84
RAPGEF3-216ENST00000547856 PMAIP1Q13794 54 aa9.77□□□□□ -0.85
RAPGEF3-216ENST00000547856 ODF3L2Q3SX64 289 aa9.77□□□□□ -0.85
RAPGEF3-216ENST00000547856 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.77□□□□□ -0.85
RAPGEF3-216ENST00000547856 A0A096LPF7 62 aa9.77□□□□□ -0.85
RAPGEF3-216ENST00000547856 LINC01006Q8NI28 216 aa9.77□□□□□ -0.85
RAPGEF3-216ENST00000547856 Q6ZTC4 211 aa9.76□□□□□ -0.85
RAPGEF3-216ENST00000547856 KRTAP1-3Q8IUG1 177 aa9.76□□□□□ -0.85
RAPGEF3-216ENST00000547856 JMJD1CQ15652 2540 aa9.75□□□□□ -0.85
RAPGEF3-216ENST00000547856 DEFB114Q30KQ6 69 aa9.75□□□□□ -0.85
RAPGEF3-216ENST00000547856 NIPBLQ6KC79 2804 aaeCLIP9.75□□□□□ -0.85
RAPGEF3-216ENST00000547856 CD164L2Q6UWJ8 174 aa9.75□□□□□ -0.85
RAPGEF3-216ENST00000547856 FLNAP21333 2647 aaKnown RBP9.74□□□□□ -0.85
RAPGEF3-216ENST00000547856 CCDC168Q8NDH2 2452 aa9.74□□□□□ -0.85
RAPGEF3-216ENST00000547856 PSPHP1O15172 72 aa9.74□□□□□ -0.85
RAPGEF3-216ENST00000547856 PLAC8L1A1L4L8 177 aa9.73□□□□□ -0.85
RAPGEF3-216ENST00000547856 PRB2P02812 416 aaPredicted RBP9.73□□□□□ -0.85
RAPGEF3-216ENST00000547856 C9orf66Q5T8R8 295 aa9.73□□□□□ -0.85
RAPGEF3-216ENST00000547856 CELA1Q9UNI1 258 aa9.72□□□□□ -0.85
RAPGEF3-216ENST00000547856 PDE6GP18545 87 aa9.72□□□□□ -0.85
RAPGEF3-216ENST00000547856 KIAA0087Q14695 138 aa9.71□□□□□ -0.86
RAPGEF3-216ENST00000547856 OCR1Q9BZK8 76 aa9.71□□□□□ -0.86
RAPGEF3-216ENST00000547856 WFDC10AQ9H1F0 79 aa9.7□□□□□ -0.86
RAPGEF3-216ENST00000547856 FAM30AQ9NZY2 134 aa9.7□□□□□ -0.86
RAPGEF3-216ENST00000547856 SETD2Q9BYW2 2564 aaPredicted RBP9.7□□□□□ -0.86
RAPGEF3-216ENST00000547856 DEFB130BP0DP73 79 aa9.7□□□□□ -0.86
RAPGEF3-216ENST00000547856 DEFB130AP0DP74 79 aa9.7□□□□□ -0.86
RAPGEF3-216ENST00000547856 A0A1W2PRX2 142 aa9.69□□□□□ -0.86
RAPGEF3-216ENST00000547856 IGKV4-1P06312 121 aa9.69□□□□□ -0.86
RAPGEF3-216ENST00000547856 C10orf25Q5T742 122 aa9.69□□□□□ -0.86
RAPGEF3-216ENST00000547856 PRR15Q8IV56 129 aa9.69□□□□□ -0.86
RAPGEF3-216ENST00000547856 Q6ZRP5 223 aa9.69□□□□□ -0.86
RAPGEF3-216ENST00000547856 PDZD2O15018 2839 aa9.68□□□□□ -0.86
RAPGEF3-216ENST00000547856 ERC2-IT1O76042 136 aa9.68□□□□□ -0.86
RAPGEF3-216ENST00000547856 PRR4Q16378 134 aa9.68□□□□□ -0.86
RAPGEF3-216ENST00000547856 UNQ6190/PRO20217Q6UXQ8 127 aa9.68□□□□□ -0.86
RAPGEF3-216ENST00000547856 C3orf84H3BNL1 204 aa9.68□□□□□ -0.86
RAPGEF3-216ENST00000547856 COX17Q14061 63 aa9.68□□□□□ -0.86
RAPGEF3-216ENST00000547856 C4orf3Q8WVX3 66 aa9.68□□□□□ -0.86
RAPGEF3-216ENST00000547856 ACANP16112 2415 aa9.67□□□□□ -0.86
RAPGEF3-216ENST00000547856 ITPR2Q14571 2701 aa9.67□□□□□ -0.86
RAPGEF3-216ENST00000547856 KLK12Q9UKR0 248 aa9.66□□□□□ -0.86
RAPGEF3-216ENST00000547856 hDV103S1A0JD37 113 aa9.66□□□□□ -0.86
RAPGEF3-216ENST00000547856 GYPEP15421 78 aa9.66□□□□□ -0.86
RAPGEF3-216ENST00000547856 C1orf64Q8NEQ6 169 aa9.65□□□□□ -0.86
RAPGEF3-216ENST00000547856 CHCHD10Q8WYQ3 142 aaPredicted RBP9.65□□□□□ -0.86
RAPGEF3-216ENST00000547856 C16orf74Q96GX8 76 aa9.65□□□□□ -0.86
RAPGEF3-216ENST00000547856 XAGE1AQ9HD64 81 aa9.65□□□□□ -0.86
RAPGEF3-216ENST00000547856 NBEAL2Q6ZNJ1 2754 aa9.65□□□□□ -0.86
RAPGEF3-216ENST00000547856 GIG44P09565 113 aaPredicted RBP9.65□□□□□ -0.87
RAPGEF3-216ENST00000547856 RETNQ9HD89 108 aa9.65□□□□□ -0.87
RAPGEF3-216ENST00000547856 FN1P02751 2386 aaKnown RBP9.64□□□□□ -0.87
RAPGEF3-216ENST00000547856 A8MU10 97 aa9.64□□□□□ -0.87
RAPGEF3-216ENST00000547856 IGLV6-57P01721 117 aa9.64□□□□□ -0.87
RAPGEF3-216ENST00000547856 DIRC1Q969H9 104 aa9.64□□□□□ -0.87
RAPGEF3-216ENST00000547856 DNAJC9-AS1A6NH13 148 aa9.63□□□□□ -0.87
RAPGEF3-216ENST00000547856 LINC00612Q8N6U2 182 aa9.63□□□□□ -0.87
RAPGEF3-216ENST00000547856 ESM1Q9NQ30 184 aa9.63□□□□□ -0.87
RAPGEF3-216ENST00000547856 ANGP03950 147 aaKnown RBP9.63□□□□□ -0.87
RAPGEF3-216ENST00000547856 COX7BP24311 80 aa9.63□□□□□ -0.87
RAPGEF3-216ENST00000547856 Q6ZRU5 148 aa9.63□□□□□ -0.87
RAPGEF3-216ENST00000547856 SMIM29Q86T20 159 aa9.63□□□□□ -0.87
RAPGEF3-216ENST00000547856 SETXQ7Z333 2677 aaKnown RBP9.63□□□□□ -0.87
RAPGEF3-216ENST00000547856 MTORP42345 2549 aa9.63□□□□□ -0.87
RAPGEF3-216ENST00000547856 IGHV4-28A0A0C4DH34 117 aa9.62□□□□□ -0.87
RAPGEF3-216ENST00000547856 ZNF73O43830 326 aaPredicted RBP9.6□□□□□ -0.87
RAPGEF3-216ENST00000547856 HELZ2Q9BYK8 2649 aaKnown RBP9.6□□□□□ -0.87
RAPGEF3-216ENST00000547856 TRAV22A0A0B4J277 110 aa9.59□□□□□ -0.87
RAPGEF3-216ENST00000547856 CYSRT1A8MQ03 144 aa9.59□□□□□ -0.87
RAPGEF3-216ENST00000547856 SPAG11BQ08648 103 aa9.59□□□□□ -0.87
RAPGEF3-216ENST00000547856 Q1T7F1 81 aa9.59□□□□□ -0.87
RAPGEF3-216ENST00000547856 A0A1B0GUV1 79 aa9.59□□□□□ -0.88
RAPGEF3-216ENST00000547856 REG3AQ06141 175 aa9.58□□□□□ -0.88
RAPGEF3-216ENST00000547856 KRTAP1-1Q07627 177 aa9.58□□□□□ -0.88
RAPGEF3-216ENST00000547856 HIGD2BQ4VC39 106 aa9.58□□□□□ -0.88
RAPGEF3-216ENST00000547856 ANK3Q12955 4377 aaKnown RBP9.57□□□□□ -0.88
RAPGEF3-216ENST00000547856 DEFB105AQ8NG35 78 aa9.57□□□□□ -0.88
RAPGEF3-216ENST00000547856 A8MUN3 132 aa9.57□□□□□ -0.88
RAPGEF3-216ENST00000547856 H3BQ85 93 aa9.56□□□□□ -0.88
RAPGEF3-216ENST00000547856 CCL24O00175 119 aa9.56□□□□□ -0.88
RAPGEF3-216ENST00000547856 UNC79Q9P2D8 2635 aa9.55□□□□□ -0.88
RAPGEF3-216ENST00000547856 ELOF1P60002 83 aaKnown RBP9.54□□□□□ -0.88
RAPGEF3-216ENST00000547856 KMT2BQ9UMN6 2715 aaPredicted RBP9.52□□□□□ -0.89
RAPGEF3-216ENST00000547856 CSNK1G2-AS1Q8NCQ2 148 aa9.51□□□□□ -0.89
RAPGEF3-216ENST00000547856 CD164Q04900 197 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms