RNA–Protein interactions for RNA: ENST00000544501.1

YBX3-214, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 181 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-214ENST00000544501 PCBD1P61457 104 aa0.17□□□□□ -2.38
YBX3-214ENST00000544501 MT1XP80297 61 aa0.17□□□□□ -2.38
YBX3-214ENST00000544501 MRPS36P82909 103 aaKnown RBP0.17□□□□□ -2.38
YBX3-214ENST00000544501 COX6A2Q02221 97 aa0.17□□□□□ -2.38
YBX3-214ENST00000544501 PLGLAQ15195 96 aa0.17□□□□□ -2.38
YBX3-214ENST00000544501 SMIM21Q3B7S5 101 aa0.17□□□□□ -2.38
YBX3-214ENST00000544501 C10orf128Q5T292 105 aa0.17□□□□□ -2.38
YBX3-214ENST00000544501 RPS27LQ71UM5 84 aaKnown RBP0.17□□□□□ -2.38
YBX3-214ENST00000544501 MT1MQ8N339 61 aa0.17□□□□□ -2.38
YBX3-214ENST00000544501 SREK1IP1Q8N9Q2 155 aaPredicted RBP0.17□□□□□ -2.38
YBX3-214ENST00000544501 NUP35Q8NFH5 326 aa0.17□□□□□ -2.38
YBX3-214ENST00000544501 VSTM2AQ8TAG5 236 aa0.17□□□□□ -2.38
YBX3-214ENST00000544501 LINC00208Q96KT6 92 aa0.17□□□□□ -2.38
YBX3-214ENST00000544501 CIB3Q96Q77 187 aaPredicted RBP0.17□□□□□ -2.38
YBX3-214ENST00000544501 COMMD3Q9UBI1 195 aa0.17□□□□□ -2.38
YBX3-214ENST00000544501 JPT1Q9UK76 154 aa0.17□□□□□ -2.38
YBX3-214ENST00000544501 TIMM8BQ9Y5J9 83 aaPredicted RBP0.17□□□□□ -2.38
YBX3-214ENST00000544501 TRBV20-1A0A075B6N2 111 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 TRAV13-1A0A0B4J241 112 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 LOC101927531A0A1B0GV80 90 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 C9orf92A6NGG3 77 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 BCL2P10415 239 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 MT1GP13640 62 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 HLA-DRB4P13762 266 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 GTF2A1P52655 376 aaPredicted RBP0.16□□□□□ -2.38
YBX3-214ENST00000544501 FXYD3Q14802 87 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 PSMG4Q5JS54 123 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 GLYATL3Q5SZD4 288 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 XAF1Q6GPH4 301 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 SPAG11AQ6PDA7 123 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 PHF5AQ7RTV0 110 aaKnown RBP0.16□□□□□ -2.38
YBX3-214ENST00000544501 COMMD6Q7Z4G1 85 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 OR8J3Q8NGG0 315 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 OR51A4Q8NGJ6 313 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 CCDC32Q9BV29 185 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 RHPN1-AS1Q9BWJ2 59 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 SPRR2GQ9BYE4 73 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 SLC35B3Q9H1N7 401 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 NOP10Q9NPE3 64 aaKnown RBP0.16□□□□□ -2.38
YBX3-214ENST00000544501 IL20Q9NYY1 176 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 LINC00474Q9P2X8 69 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 LAMTOR3Q9UHA4 124 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 SMPXQ9UHP9 88 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 RABAC1Q9UI14 185 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 PRO0255Q9UI72 69 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 HLA-DRB4X5D2U9 266 aa0.16□□□□□ -2.38
YBX3-214ENST00000544501 TRAV36DV7A0A075B6V5 113 aa0.15□□□□□ -2.39
YBX3-214ENST00000544501 TRBV7-1A0A0A6YYK4 115 aa0.15□□□□□ -2.39
YBX3-214ENST00000544501 TMEM30CPA0ZSE6 113 aa0.15□□□□□ -2.39
YBX3-214ENST00000544501 PFDN1O60925 122 aa0.15□□□□□ -2.39
YBX3-214ENST00000544501 SLC25A4P12235 298 aa0.15□□□□□ -2.39
YBX3-214ENST00000544501 RPL7P18124 248 aaKnown RBP0.15□□□□□ -2.39
YBX3-214ENST00000544501 ETV6P41212 452 aa0.15□□□□□ -2.39
YBX3-214ENST00000544501 B2MP61769 119 aa0.15□□□□□ -2.39
YBX3-214ENST00000544501 RPS29P62273 56 aaKnown RBP0.15□□□□□ -2.39
YBX3-214ENST00000544501 KRTAP19-7Q3SYF9 63 aa0.15□□□□□ -2.39
YBX3-214ENST00000544501 ATOH7Q8N100 152 aa0.15□□□□□ -2.39
YBX3-214ENST00000544501 TMEM229BQ8NBD8 167 aa0.15□□□□□ -2.39
YBX3-214ENST00000544501 TMEM263Q8WUH6 116 aaKnown RBP0.15□□□□□ -2.39
YBX3-214ENST00000544501 SMIM7Q9BQ49 75 aa0.15□□□□□ -2.39
YBX3-214ENST00000544501 MRPL36Q9P0J6 103 aaKnown RBP0.15□□□□□ -2.39
YBX3-214ENST00000544501 METTL1Q9UBP6 276 aaKnown RBP0.15□□□□□ -2.39
YBX3-214ENST00000544501 LAMTOR2Q9Y2Q5 125 aa0.15□□□□□ -2.39
YBX3-214ENST00000544501 MED31Q9Y3C7 131 aa0.15□□□□□ -2.39
YBX3-214ENST00000544501 LOC107984640A0A0U1RRK4 108 aa0.14□□□□□ -2.39
YBX3-214ENST00000544501 A0A1B0GV72 72 aa0.14□□□□□ -2.39
YBX3-214ENST00000544501 A0A1W2PRE2 83 aa0.14□□□□□ -2.39
YBX3-214ENST00000544501 A8MTW9 85 aa0.14□□□□□ -2.39
YBX3-214ENST00000544501 H3BMG7 143 aa0.14□□□□□ -2.39
YBX3-214ENST00000544501 M0R135 149 aa0.14□□□□□ -2.39
YBX3-214ENST00000544501 M0R2Z0 102 aa0.14□□□□□ -2.39
YBX3-214ENST00000544501 TPST1O60507 370 aa0.14□□□□□ -2.39
YBX3-214ENST00000544501 HMGN2P05204 90 aaKnown RBP0.14□□□□□ -2.39
YBX3-214ENST00000544501 FABP1P07148 127 aa0.14□□□□□ -2.39
YBX3-214ENST00000544501 SAA1P0DJI8 122 aaPredicted RBP0.14□□□□□ -2.39
YBX3-214ENST00000544501 CKS2P33552 79 aa0.14□□□□□ -2.39
YBX3-214ENST00000544501 GUCA1AP43080 201 aaPredicted RBP0.14□□□□□ -2.39
YBX3-214ENST00000544501 DEFB1P60022 68 aa0.14□□□□□ -2.39
YBX3-214ENST00000544501 COPZ1P61923 177 aa0.14□□□□□ -2.39
YBX3-214ENST00000544501 Q0VG73 95 aa0.14□□□□□ -2.39
YBX3-214ENST00000544501 KRTAP6-2Q3LI66 62 aa0.14□□□□□ -2.39
YBX3-214ENST00000544501 TMEM78Q5T7P6 136 aa0.14□□□□□ -2.39
YBX3-214ENST00000544501 SAMD13Q5VXD3 122 aa0.14□□□□□ -2.39
YBX3-214ENST00000544501 Q5XG85 94 aa0.14□□□□□ -2.39
YBX3-214ENST00000544501 TMEM167AQ8TBQ9 72 aa0.14□□□□□ -2.39
YBX3-214ENST00000544501 SDF2Q99470 211 aa0.14□□□□□ -2.39
YBX3-214ENST00000544501 MPC1Q9Y5U8 109 aa0.14□□□□□ -2.39
YBX3-214ENST00000544501 IGHV1-24A0A0C4DH33 117 aa0.13□□□□□ -2.39
YBX3-214ENST00000544501 TRBV27A0A0K0K1C4 114 aa0.13□□□□□ -2.39
YBX3-214ENST00000544501 GNG14A0A1W2PPG7 69 aa0.13□□□□□ -2.39
YBX3-214ENST00000544501 SPINK1P00995 79 aa0.13□□□□□ -2.39
YBX3-214ENST00000544501 SAA2P0DJI9 122 aaPredicted RBP0.13□□□□□ -2.39
YBX3-214ENST00000544501 HTN1P15515 57 aa0.13□□□□□ -2.39
YBX3-214ENST00000544501 S100GP29377 79 aa0.13□□□□□ -2.39
YBX3-214ENST00000544501 DNAJB13P59910 316 aa0.13□□□□□ -2.39
YBX3-214ENST00000544501 PRCDQ00LT1 54 aa0.13□□□□□ -2.39
YBX3-214ENST00000544501 SPINK13Q1W4C9 94 aa0.13□□□□□ -2.39
YBX3-214ENST00000544501 KLK9Q2XQG4 91 aa0.13□□□□□ -2.39
YBX3-214ENST00000544501 C9orf116Q5BN46 136 aaPredicted RBP0.13□□□□□ -2.39
YBX3-214ENST00000544501 IZUMO2Q6UXV1 221 aa0.13□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms