RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 TPST1O60507 370 aa0.18□□□□□ -2.38
PRKDC-210ENST00000541488 NEFHP12036 1026 aa0.18□□□□□ -2.38
PRKDC-210ENST00000541488 SDC4P31431 198 aa0.18□□□□□ -2.38
PRKDC-210ENST00000541488 DEFB131AP59861 70 aa0.18□□□□□ -2.38
PRKDC-210ENST00000541488 RHOHQ15669 191 aa0.18□□□□□ -2.38
PRKDC-210ENST00000541488 TDRG1Q3Y452 100 aa0.18□□□□□ -2.38
PRKDC-210ENST00000541488 TMEM128Q5BJH2 165 aa0.18□□□□□ -2.38
PRKDC-210ENST00000541488 SAMD13Q5VXD3 122 aa0.18□□□□□ -2.38
PRKDC-210ENST00000541488 UNQ5815/PRO19632Q6UWF5 114 aa0.18□□□□□ -2.38
PRKDC-210ENST00000541488 IDO2Q6ZQW0 420 aa0.18□□□□□ -2.38
PRKDC-210ENST00000541488 C4orf33Q8N1A6 199 aa0.18□□□□□ -2.38
PRKDC-210ENST00000541488 MT1MQ8N339 61 aa0.18□□□□□ -2.38
PRKDC-210ENST00000541488 LEAP2Q969E1 77 aa0.18□□□□□ -2.38
PRKDC-210ENST00000541488 LINC00208Q96KT6 92 aa0.18□□□□□ -2.38
PRKDC-210ENST00000541488 SNRNP25Q9BV90 132 aaKnown RBP0.18□□□□□ -2.38
PRKDC-210ENST00000541488 LINC00470Q9BZP3 86 aa0.18□□□□□ -2.38
PRKDC-210ENST00000541488 HBDP02042 147 aa0.17□□□□□ -2.38
PRKDC-210ENST00000541488 MT1EP04732 61 aa0.17□□□□□ -2.38
PRKDC-210ENST00000541488 RPL7P18124 248 aaKnown RBP0.17□□□□□ -2.38
PRKDC-210ENST00000541488 CKS2P33552 79 aa0.17□□□□□ -2.38
PRKDC-210ENST00000541488 EDDM3BP56851 147 aa0.17□□□□□ -2.38
PRKDC-210ENST00000541488 MT1XP80297 61 aa0.17□□□□□ -2.38
PRKDC-210ENST00000541488 KRTAP19-8Q3LI54 63 aa0.17□□□□□ -2.38
PRKDC-210ENST00000541488 KRTAP6-2Q3LI66 62 aa0.17□□□□□ -2.38
PRKDC-210ENST00000541488 Q5XG85 94 aa0.17□□□□□ -2.38
PRKDC-210ENST00000541488 LYPD5Q6UWN5 251 aa0.17□□□□□ -2.38
PRKDC-210ENST00000541488 ATP6V0E2Q8NHE4 81 aa0.17□□□□□ -2.38
PRKDC-210ENST00000541488 TRAPPC2LQ9UL33 140 aa0.17□□□□□ -2.38
PRKDC-210ENST00000541488 FXYD6-FXYD2A0A087WZ82 144 aa0.16□□□□□ -2.38
PRKDC-210ENST00000541488 A0A096LNI7 61 aa0.16□□□□□ -2.38
PRKDC-210ENST00000541488 IGHV1-24A0A0C4DH33 117 aa0.16□□□□□ -2.38
PRKDC-210ENST00000541488 LOC101927531A0A1B0GV80 90 aa0.16□□□□□ -2.38
PRKDC-210ENST00000541488 K7EP13 123 aa0.16□□□□□ -2.38
PRKDC-210ENST00000541488 S100GP29377 79 aa0.16□□□□□ -2.38
PRKDC-210ENST00000541488 UBE2D3P61077 147 aa0.16□□□□□ -2.38
PRKDC-210ENST00000541488 RPS28P62857 69 aaKnown RBP0.16□□□□□ -2.38
PRKDC-210ENST00000541488 SARNPP82979 210 aaKnown RBP0.16□□□□□ -2.38
PRKDC-210ENST00000541488 COX6A2Q02221 97 aa0.16□□□□□ -2.38
PRKDC-210ENST00000541488 KLKP1Q107X0 134 aa0.16□□□□□ -2.38
PRKDC-210ENST00000541488 ZNF56Q15929 161 aa0.16□□□□□ -2.38
PRKDC-210ENST00000541488 NCBP2-AS2Q69YL0 99 aa0.16□□□□□ -2.38
PRKDC-210ENST00000541488 SMIM15Q7Z3B0 74 aa0.16□□□□□ -2.38
PRKDC-210ENST00000541488 OTOSQ8NHW6 89 aa0.16□□□□□ -2.38
PRKDC-210ENST00000541488 BRK1Q8WUW1 75 aa0.16□□□□□ -2.38
PRKDC-210ENST00000541488 AIF1LQ9BQI0 150 aa0.16□□□□□ -2.38
PRKDC-210ENST00000541488 ATG5Q9H1Y0 275 aa0.16□□□□□ -2.38
PRKDC-210ENST00000541488 COMMD3Q9UBI1 195 aa0.16□□□□□ -2.38
PRKDC-210ENST00000541488 LOC285095A0A1B0GVY8 99 aa0.15□□□□□ -2.39
PRKDC-210ENST00000541488 TMEM14DPA8MWL7 114 aa0.15□□□□□ -2.39
PRKDC-210ENST00000541488 IQCF6A8MYZ5 107 aa0.15□□□□□ -2.39
PRKDC-210ENST00000541488 MCRIP1C9JLW8 97 aa0.15□□□□□ -2.39
PRKDC-210ENST00000541488 FXYD1O00168 92 aa0.15□□□□□ -2.39
PRKDC-210ENST00000541488 CDC42EP2O14613 210 aa0.15□□□□□ -2.39
PRKDC-210ENST00000541488 RBP4P02753 201 aa0.15□□□□□ -2.39
PRKDC-210ENST00000541488 MT1GP13640 62 aa0.15□□□□□ -2.39
PRKDC-210ENST00000541488 ADCYAP1P18509 176 aa0.15□□□□□ -2.39
PRKDC-210ENST00000541488 DEFB1P60022 68 aa0.15□□□□□ -2.39
PRKDC-210ENST00000541488 PSPHP78330 225 aa0.15□□□□□ -2.39
PRKDC-210ENST00000541488 PLGLAQ15195 96 aa0.15□□□□□ -2.39
PRKDC-210ENST00000541488 KRTAP19-7Q3SYF9 63 aa0.15□□□□□ -2.39
PRKDC-210ENST00000541488 TMEM35BQ8NCS4 154 aa0.15□□□□□ -2.39
PRKDC-210ENST00000541488 VSTM2AQ8TAG5 236 aa0.15□□□□□ -2.39
PRKDC-210ENST00000541488 SLC35B3Q9H1N7 401 aa0.15□□□□□ -2.39
PRKDC-210ENST00000541488 COA4Q9NYJ1 87 aa0.15□□□□□ -2.39
PRKDC-210ENST00000541488 NDUFA12Q9UI09 145 aa0.15□□□□□ -2.39
PRKDC-210ENST00000541488 TRBV10-1A0A0K0K1A3 114 aa0.14□□□□□ -2.39
PRKDC-210ENST00000541488 OOSP1A8MZH6 123 aa0.14□□□□□ -2.39
PRKDC-210ENST00000541488 TSTD3H0UI37 97 aa0.14□□□□□ -2.39
PRKDC-210ENST00000541488 H3BNG1 76 aa0.14□□□□□ -2.39
PRKDC-210ENST00000541488 IL7P13232 177 aa0.14□□□□□ -2.39
PRKDC-210ENST00000541488 HTN1P15515 57 aa0.14□□□□□ -2.39
PRKDC-210ENST00000541488 HIST1H1BP16401 226 aaKnown RBP0.14□□□□□ -2.39
PRKDC-210ENST00000541488 SLC48A1Q6P1K1 146 aa0.14□□□□□ -2.39
PRKDC-210ENST00000541488 VPS25Q9BRG1 176 aa0.14□□□□□ -2.39
PRKDC-210ENST00000541488 NOP10Q9NPE3 64 aaKnown RBP0.14□□□□□ -2.39
PRKDC-210ENST00000541488 SPANXCQ9NY87 97 aa0.14□□□□□ -2.39
PRKDC-210ENST00000541488 METTL1Q9UBP6 276 aaKnown RBP0.14□□□□□ -2.39
PRKDC-210ENST00000541488 RABAC1Q9UI14 185 aa0.14□□□□□ -2.39
PRKDC-210ENST00000541488 TRBV20-1A0A075B6N2 111 aa0.13□□□□□ -2.39
PRKDC-210ENST00000541488 TRAV2A0A0B4J234 112 aa0.13□□□□□ -2.39
PRKDC-210ENST00000541488 TEX49A0A1B0GTD5 131 aa0.13□□□□□ -2.39
PRKDC-210ENST00000541488 FAM236AA0A1B0GUQ0 79 aa0.13□□□□□ -2.39
PRKDC-210ENST00000541488 FAM236BA0A1B0GV22 79 aa0.13□□□□□ -2.39
PRKDC-210ENST00000541488 H3BUA1 57 aa0.13□□□□□ -2.39
PRKDC-210ENST00000541488 J3KT08 172 aa0.13□□□□□ -2.39
PRKDC-210ENST00000541488 DPM2O94777 84 aa0.13□□□□□ -2.39
PRKDC-210ENST00000541488 IGKCP01834 107 aa0.13□□□□□ -2.39
PRKDC-210ENST00000541488 SLC25A5P05141 298 aaKnown RBP0.13□□□□□ -2.39
PRKDC-210ENST00000541488 CCKP06307 115 aa0.13□□□□□ -2.39
PRKDC-210ENST00000541488 POLR2JP52435 117 aaKnown RBP0.13□□□□□ -2.39
PRKDC-210ENST00000541488 PCBD1P61457 104 aa0.13□□□□□ -2.39
PRKDC-210ENST00000541488 SNRPFP62306 86 aaKnown RBP0.13□□□□□ -2.39
PRKDC-210ENST00000541488 PSMG4Q5JS54 123 aa0.13□□□□□ -2.39
PRKDC-210ENST00000541488 OR8I2Q8N0Y5 310 aa0.13□□□□□ -2.39
PRKDC-210ENST00000541488 PPP1R1CQ8WVI7 109 aa0.13□□□□□ -2.39
PRKDC-210ENST00000541488 PPDPFLQ8WWR9 84 aa0.13□□□□□ -2.39
PRKDC-210ENST00000541488 SPANXA1Q9NS26 97 aa0.13□□□□□ -2.39
PRKDC-210ENST00000541488 HSPB11Q9Y547 144 aa0.13□□□□□ -2.39
PRKDC-210ENST00000541488 LINC00312Q9Y6C7 94 aa0.13□□□□□ -2.39
PRKDC-210ENST00000541488 A0A1B0GX51 115 aa0.12□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 119.4 ms