RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 LMTK2Q8IWU2 1503 aa2.01□□□□□ -2.09
PRKDC-209ENST00000540819 SFTA3P0C7M3 94 aa2.01□□□□□ -2.09
PRKDC-209ENST00000540819 HMGA1P17096 107 aaKnown RBP2.01□□□□□ -2.09
PRKDC-209ENST00000540819 Q6ZSA8 131 aa2.01□□□□□ -2.09
PRKDC-209ENST00000540819 WFDC9Q8NEX5 89 aa2.01□□□□□ -2.09
PRKDC-209ENST00000540819 GAFA1Q96PS6 74 aa2.01□□□□□ -2.09
PRKDC-209ENST00000540819 EEA1Q15075 1411 aa2□□□□□ -2.09
PRKDC-209ENST00000540819 PREX1Q8TCU6 1659 aa2□□□□□ -2.09
PRKDC-209ENST00000540819 LINC00959A0A1B0GUT2 108 aa2□□□□□ -2.09
PRKDC-209ENST00000540819 ATXN8Q156A1 80 aa2□□□□□ -2.09
PRKDC-209ENST00000540819 KRTAP21-3Q3LHN1 58 aa2□□□□□ -2.09
PRKDC-209ENST00000540819 GNG13Q9P2W3 67 aa2□□□□□ -2.09
PRKDC-209ENST00000540819 GOLGA4Q13439 2230 aaKnown RBP2□□□□□ -2.09
PRKDC-209ENST00000540819 TULP4Q9NRJ4 1543 aa2□□□□□ -2.09
PRKDC-209ENST00000540819 ANKRD17O75179 2603 aaKnown RBP2□□□□□ -2.09
PRKDC-209ENST00000540819 LAMC1P11047 1609 aa1.99□□□□□ -2.09
PRKDC-209ENST00000540819 C3orf79P0CE67 100 aa1.99□□□□□ -2.09
PRKDC-209ENST00000540819 SLIT1O75093 1534 aa1.99□□□□□ -2.09
PRKDC-209ENST00000540819 URB1O60287 2271 aaKnown RBP1.99□□□□□ -2.09
PRKDC-209ENST00000540819 RALGAPBQ86X10 1494 aa1.99□□□□□ -2.09
PRKDC-209ENST00000540819 JMJD1CQ15652 2540 aa1.98□□□□□ -2.09
PRKDC-209ENST00000540819 COL6A6A6NMZ7 2263 aa1.98□□□□□ -2.09
PRKDC-209ENST00000540819 KRTAP12-3P60328 96 aa1.98□□□□□ -2.09
PRKDC-209ENST00000540819 NREPQ16612 68 aa1.98□□□□□ -2.09
PRKDC-209ENST00000540819 SPINK9Q5DT21 86 aa1.98□□□□□ -2.09
PRKDC-209ENST00000540819 ROS1P08922 2347 aa1.98□□□□□ -2.09
PRKDC-209ENST00000540819 FXYD6-FXYD2A0A087WZ82 144 aa1.97□□□□□ -2.09
PRKDC-209ENST00000540819 LCE6AA0A183 80 aa1.97□□□□□ -2.09
PRKDC-209ENST00000540819 SMIM5Q71RC9 77 aa1.97□□□□□ -2.09
PRKDC-209ENST00000540819 PLXNC1O60486 1568 aa1.97□□□□□ -2.09
PRKDC-209ENST00000540819 DIP2AQ14689 1571 aa1.97□□□□□ -2.09
PRKDC-209ENST00000540819 DOT1LQ8TEK3 1739 aa1.97□□□□□ -2.09
PRKDC-209ENST00000540819 RICTORQ6R327 1708 aa1.95□□□□□ -2.1
PRKDC-209ENST00000540819 FAM208BQ5VWN6 2430 aa1.95□□□□□ -2.1
PRKDC-209ENST00000540819 COX7BP24311 80 aa1.95□□□□□ -2.1
PRKDC-209ENST00000540819 TSC2P49815 1807 aa1.94□□□□□ -2.1
PRKDC-209ENST00000540819 ABCA6Q8N139 1617 aa1.94□□□□□ -2.1
PRKDC-209ENST00000540819 A0A0D9SFI3 127 aa1.93□□□□□ -2.1
PRKDC-209ENST00000540819 NRAPQ86VF7 1730 aa1.91□□□□□ -2.1
PRKDC-209ENST00000540819 FMN2Q9NZ56 1722 aa1.91□□□□□ -2.1
PRKDC-209ENST00000540819 ALS2Q96Q42 1657 aa1.91□□□□□ -2.1
PRKDC-209ENST00000540819 ARL14EPLP0DKL9 152 aa1.9□□□□□ -2.11
PRKDC-209ENST00000540819 KRTAP21-2Q3LI59 83 aa1.9□□□□□ -2.11
PRKDC-209ENST00000540819 TP53AIP1Q9HCN2 124 aa1.9□□□□□ -2.11
PRKDC-209ENST00000540819 I3L2K1 104 aa1.89□□□□□ -2.11
PRKDC-209ENST00000540819 RPL38P63173 70 aaKnown RBP1.89□□□□□ -2.11
PRKDC-209ENST00000540819 CNFNQ9BYD5 112 aa1.89□□□□□ -2.11
PRKDC-209ENST00000540819 ABCA10Q8WWZ4 1543 aa1.88□□□□□ -2.11
PRKDC-209ENST00000540819 C10orf95Q9H7T3 257 aa1.88□□□□□ -2.11
PRKDC-209ENST00000540819 MAST1Q9Y2H9 1570 aa1.88□□□□□ -2.11
PRKDC-209ENST00000540819 SPTY2D1-AS1A0A0U1RR47 76 aa1.87□□□□□ -2.11
PRKDC-209ENST00000540819 PIGYQ3MUY2 71 aa1.87□□□□□ -2.11
PRKDC-209ENST00000540819 DOPEY2Q9Y3R5 2298 aa1.87□□□□□ -2.11
PRKDC-209ENST00000540819 KIF1AQ12756 1690 aa1.86□□□□□ -2.11
PRKDC-209ENST00000540819 CPSF4LA6NMK7 179 aaKnown RBP1.86□□□□□ -2.11
PRKDC-209ENST00000540819 DEFB123Q8N688 67 aa1.86□□□□□ -2.11
PRKDC-209ENST00000540819 OTOGLQ3ZCN5 2332 aa1.86□□□□□ -2.11
PRKDC-209ENST00000540819 GLI2P10070 1586 aa1.85□□□□□ -2.11
PRKDC-209ENST00000540819 NWD1Q149M9 1564 aa1.85□□□□□ -2.11
PRKDC-209ENST00000540819 TNCP24821 2201 aa1.85□□□□□ -2.11
PRKDC-209ENST00000540819 NDUFA4O00483 81 aa1.85□□□□□ -2.11
PRKDC-209ENST00000540819 PRXQ9BXM0 1461 aa1.85□□□□□ -2.11
PRKDC-209ENST00000540819 LINC01549A6NIU2 74 aa1.84□□□□□ -2.11
PRKDC-209ENST00000540819 USMG5Q96IX5 58 aa1.84□□□□□ -2.11
PRKDC-209ENST00000540819 CRIPTQ9P021 101 aa1.84□□□□□ -2.11
PRKDC-209ENST00000540819 PLCE1Q9P212 2302 aa1.84□□□□□ -2.12
PRKDC-209ENST00000540819 ABCC6O95255 1503 aa1.83□□□□□ -2.12
PRKDC-209ENST00000540819 A0A0D9SG42 100 aa1.83□□□□□ -2.12
PRKDC-209ENST00000540819 KRTAP10-4P60372 401 aaPredicted RBP1.83□□□□□ -2.12
PRKDC-209ENST00000540819 ENHOQ6UWT2 76 aa1.83□□□□□ -2.12
PRKDC-209ENST00000540819 FAM103A1Q9BTL3 118 aaKnown RBP1.83□□□□□ -2.12
PRKDC-209ENST00000540819 RNF17Q9BXT8 1623 aaKnown RBP1.83□□□□□ -2.12
PRKDC-209ENST00000540819 CACNA1EQ15878 2313 aa1.82□□□□□ -2.12
PRKDC-209ENST00000540819 NESP48681 1621 aa1.81□□□□□ -2.12
PRKDC-209ENST00000540819 UBL5Q9BZL1 73 aa1.81□□□□□ -2.12
PRKDC-209ENST00000540819 ITSN2Q9NZM3 1697 aa1.8□□□□□ -2.12
PRKDC-209ENST00000540819 DDX60LQ5H9U9 1706 aaKnown RBP1.8□□□□□ -2.12
PRKDC-209ENST00000540819 K7EQZ3 153 aa1.8□□□□□ -2.12
PRKDC-209ENST00000540819 COX6A2Q02221 97 aa1.8□□□□□ -2.12
PRKDC-209ENST00000540819 CROCC2H7BZ55 1655 aa1.8□□□□□ -2.12
PRKDC-209ENST00000540819 I3L3M4 83 aa1.79□□□□□ -2.12
PRKDC-209ENST00000540819 PRO0255Q9UI72 69 aa1.79□□□□□ -2.12
PRKDC-209ENST00000540819 LY75O60449 1722 aa1.79□□□□□ -2.12
PRKDC-209ENST00000540819 ASH1LQ9NR48 2969 aaKnown RBP1.78□□□□□ -2.12
PRKDC-209ENST00000540819 TJP1Q07157 1748 aa1.78□□□□□ -2.12
PRKDC-209ENST00000540819 MROH2AA6NES4 1674 aa1.78□□□□□ -2.12
PRKDC-209ENST00000540819 HMCN1Q96RW7 5635 aa1.78□□□□□ -2.12
PRKDC-209ENST00000540819 SYCP2Q9BX26 1530 aa1.77□□□□□ -2.13
PRKDC-209ENST00000540819 CNOT1A5YKK6 2376 aaKnown RBP1.76□□□□□ -2.13
PRKDC-209ENST00000540819 Q8IZM0 81 aa1.76□□□□□ -2.13
PRKDC-209ENST00000540819 KCNQ1DNQ9H478 68 aa1.75□□□□□ -2.13
PRKDC-209ENST00000540819 TNRC6CQ9HCJ0 1690 aaKnown RBP1.74□□□□□ -2.13
PRKDC-209ENST00000540819 CPS1P31327 1500 aa1.74□□□□□ -2.13
PRKDC-209ENST00000540819 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.74□□□□□ -2.134e-12■■■■■ 33.8
PRKDC-209ENST00000540819 C3P01024 1663 aa1.74□□□□□ -2.13
PRKDC-209ENST00000540819 PTPRZ1P23471 2315 aaPredicted RBP1.73□□□□□ -2.13
PRKDC-209ENST00000540819 MRPL34Q9BQ48 92 aaKnown RBP1.73□□□□□ -2.13
PRKDC-209ENST00000540819 DEFB114Q30KQ6 69 aa1.72□□□□□ -2.13
PRKDC-209ENST00000540819 USF3Q68DE3 2245 aa1.72□□□□□ -2.13
PRKDC-209ENST00000540819 C2CD3Q4AC94 2353 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms