RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 SS18Q15532 418 aa4.41□□□□□ -1.7
SYNE1-233ENST00000535896 GAGE2AQ6NT46 116 aa4.41□□□□□ -1.7
SYNE1-233ENST00000535896 CHCHD5Q9BSY4 110 aa4.41□□□□□ -1.7
SYNE1-233ENST00000535896 ORMDL1Q9P0S3 153 aa4.41□□□□□ -1.7
SYNE1-233ENST00000535896 CMYA5Q8N3K9 4069 aa4.41□□□□□ -1.7
SYNE1-233ENST00000535896 PKD1L1Q8TDX9 2849 aa4.41□□□□□ -1.7
SYNE1-233ENST00000535896 NOTCH3Q9UM47 2321 aa4.41□□□□□ -1.7
SYNE1-233ENST00000535896 IGHV4-28A0A0C4DH34 117 aa4.4□□□□□ -1.7
SYNE1-233ENST00000535896 A0A0U1RRA0 63 aa4.4□□□□□ -1.7
SYNE1-233ENST00000535896 LINC00959A0A1B0GUT2 108 aa4.4□□□□□ -1.7
SYNE1-233ENST00000535896 F8WDY8 70 aa4.4□□□□□ -1.7
SYNE1-233ENST00000535896 KRTAP10-3P60369 221 aa4.4□□□□□ -1.7
SYNE1-233ENST00000535896 C9orf153Q5TBE3 101 aa4.4□□□□□ -1.7
SYNE1-233ENST00000535896 NBEAL1Q6ZS30 2694 aa4.4□□□□□ -1.7
SYNE1-233ENST00000535896 TRBV10-3A0A0K0K1G6 114 aa4.4□□□□□ -1.71
SYNE1-233ENST00000535896 TMEM256-PLSCR3K7ERE1 68 aa4.4□□□□□ -1.71
SYNE1-233ENST00000535896 RPL18AQ02543 176 aaKnown RBP4.4□□□□□ -1.71
SYNE1-233ENST00000535896 TOMM7Q9P0U1 55 aa4.4□□□□□ -1.71
SYNE1-233ENST00000535896 NOTCH1P46531 2555 aa4.39□□□□□ -1.71
SYNE1-233ENST00000535896 IGLV4-60A0A075B6I1 120 aa4.39□□□□□ -1.71
SYNE1-233ENST00000535896 A0A087WYN8 130 aa4.39□□□□□ -1.71
SYNE1-233ENST00000535896 LYRM9A8MSI8 78 aa4.39□□□□□ -1.71
SYNE1-233ENST00000535896 LECT2O14960 151 aa4.39□□□□□ -1.71
SYNE1-233ENST00000535896 C6orf226Q5I0X4 101 aa4.39□□□□□ -1.71
SYNE1-233ENST00000535896 PRO0255Q9UI72 69 aa4.39□□□□□ -1.71
SYNE1-233ENST00000535896 LOC100131303A0A0U1RQF7 123 aa4.38□□□□□ -1.71
SYNE1-233ENST00000535896 BCE1O60756 84 aa4.38□□□□□ -1.71
SYNE1-233ENST00000535896 CCKP06307 115 aa4.38□□□□□ -1.71
SYNE1-233ENST00000535896 TMEM258P61165 79 aa4.38□□□□□ -1.71
SYNE1-233ENST00000535896 RPS28P62857 69 aaKnown RBP4.38□□□□□ -1.71
SYNE1-233ENST00000535896 CD164L2Q6UWJ8 174 aa4.38□□□□□ -1.71
SYNE1-233ENST00000535896 Q9HAA7 133 aa4.38□□□□□ -1.71
SYNE1-233ENST00000535896 J3KT08 172 aa4.37□□□□□ -1.71
SYNE1-233ENST00000535896 PDE6GP18545 87 aa4.37□□□□□ -1.71
SYNE1-233ENST00000535896 LYPD5Q6UWN5 251 aa4.37□□□□□ -1.71
SYNE1-233ENST00000535896 SMIM20Q8N5G0 67 aa4.37□□□□□ -1.71
SYNE1-233ENST00000535896 SERP2Q8N6R1 65 aa4.37□□□□□ -1.71
SYNE1-233ENST00000535896 Q8N814 137 aa4.37□□□□□ -1.71
SYNE1-233ENST00000535896 C2orf48Q96LS8 159 aa4.37□□□□□ -1.71
SYNE1-233ENST00000535896 C14orf132Q9NPU4 83 aa4.37□□□□□ -1.71
SYNE1-233ENST00000535896 hADV29S1A0JD25 119 aa4.36□□□□□ -1.71
SYNE1-233ENST00000535896 NDUFC2-KCTD14E9PQ53 114 aa4.36□□□□□ -1.71
SYNE1-233ENST00000535896 PFN2P35080 140 aa4.36□□□□□ -1.71
SYNE1-233ENST00000535896 C5orf47Q569G3 176 aa4.36□□□□□ -1.71
SYNE1-233ENST00000535896 OR13C6PQ8NH95 151 aa4.36□□□□□ -1.71
SYNE1-233ENST00000535896 LINC00846Q9NV44 126 aa4.36□□□□□ -1.71
SYNE1-233ENST00000535896 PLA2G2DQ9UNK4 145 aa4.36□□□□□ -1.71
SYNE1-233ENST00000535896 LOC110117498A0A087WWA1 95 aa4.35□□□□□ -1.71
SYNE1-233ENST00000535896 GYPEP15421 78 aa4.35□□□□□ -1.71
SYNE1-233ENST00000535896 RPL35AP18077 110 aaKnown RBP4.35□□□□□ -1.71
SYNE1-233ENST00000535896 KIAA0087Q14695 138 aa4.35□□□□□ -1.71
SYNE1-233ENST00000535896 LINC00482Q8N8I6 264 aa4.35□□□□□ -1.71
SYNE1-233ENST00000535896 WFDC9Q8NEX5 89 aa4.35□□□□□ -1.71
SYNE1-233ENST00000535896 DNAH3Q8TD57 4116 aa4.35□□□□□ -1.71
SYNE1-233ENST00000535896 GVQW2A0A096LPI5 108 aaPredicted RBP4.34□□□□□ -1.71
SYNE1-233ENST00000535896 IGKV3OR2-268A0A0C4DH90 116 aa4.34□□□□□ -1.71
SYNE1-233ENST00000535896 A0A0J9YWU9 116 aa4.34□□□□□ -1.71
SYNE1-233ENST00000535896 IGHV4-30-4P0DP06 118 aa4.34□□□□□ -1.71
SYNE1-233ENST00000535896 XCL1P47992 114 aa4.34□□□□□ -1.71
SYNE1-233ENST00000535896 NANOS2P60321 138 aaKnown RBP4.34□□□□□ -1.71
SYNE1-233ENST00000535896 UBL5Q9BZL1 73 aa4.34□□□□□ -1.71
SYNE1-233ENST00000535896 TRBV7-6A0A0J9YX20 115 aa4.33□□□□□ -1.72
SYNE1-233ENST00000535896 USP17L23D6RBM5 183 aa4.33□□□□□ -1.72
SYNE1-233ENST00000535896 NCR3O14931 201 aa4.33□□□□□ -1.72
SYNE1-233ENST00000535896 WFDC10AQ9H1F0 79 aa4.33□□□□□ -1.72
SYNE1-233ENST00000535896 FBN3Q75N90 2809 aa4.33□□□□□ -1.72
SYNE1-233ENST00000535896 DEFB130BP0DP73 79 aa4.32□□□□□ -1.72
SYNE1-233ENST00000535896 DEFB130AP0DP74 79 aa4.32□□□□□ -1.72
SYNE1-233ENST00000535896 APOC4P55056 127 aa4.32□□□□□ -1.72
SYNE1-233ENST00000535896 REG3AQ06141 175 aa4.32□□□□□ -1.72
SYNE1-233ENST00000535896 C9orf129Q5T035 196 aaKnown RBP4.32□□□□□ -1.72
SYNE1-233ENST00000535896 C9orf66Q5T8R8 295 aa4.32□□□□□ -1.72
SYNE1-233ENST00000535896 LINC00575Q6W349 94 aa4.32□□□□□ -1.72
SYNE1-233ENST00000535896 C6orf223Q8N319 242 aa4.32□□□□□ -1.72
SYNE1-233ENST00000535896 CHCHD10Q8WYQ3 142 aaPredicted RBP4.32□□□□□ -1.72
SYNE1-233ENST00000535896 UPK3BQ9BT76 320 aa4.32□□□□□ -1.72
SYNE1-233ENST00000535896 IGLV6-57P01721 117 aa4.31□□□□□ -1.72
SYNE1-233ENST00000535896 MIFP14174 115 aa4.31□□□□□ -1.72
SYNE1-233ENST00000535896 LELP1Q5T871 98 aa4.31□□□□□ -1.72
SYNE1-233ENST00000535896 PRR34Q9NV39 138 aa4.31□□□□□ -1.72
SYNE1-233ENST00000535896 CXCL6P80162 114 aa4.3□□□□□ -1.72
SYNE1-233ENST00000535896 RBM3P98179 157 aaKnown RBP4.3□□□□□ -1.72
SYNE1-233ENST00000535896 Q6ZQT0 140 aa4.3□□□□□ -1.72
SYNE1-233ENST00000535896 LINC00269Q8N2A0 174 aa4.3□□□□□ -1.72
SYNE1-233ENST00000535896 MEGF8Q7Z7M0 2845 aa4.29□□□□□ -1.72
SYNE1-233ENST00000535896 IGKV3D-7A0A0C4DH55 119 aa4.29□□□□□ -1.72
SYNE1-233ENST00000535896 ANGP03950 147 aaKnown RBP4.29□□□□□ -1.72
SYNE1-233ENST00000535896 SPAG11BQ08648 103 aa4.29□□□□□ -1.72
SYNE1-233ENST00000535896 EGFEM1PQ0D2K5 195 aa4.29□□□□□ -1.72
SYNE1-233ENST00000535896 C6orf99Q4VX62 202 aa4.29□□□□□ -1.72
SYNE1-233ENST00000535896 KPRPQ5T749 579 aaPredicted RBP4.29□□□□□ -1.72
SYNE1-233ENST00000535896 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.29□□□□□ -1.72
SYNE1-233ENST00000535896 LOC107984640A0A0U1RRK4 108 aa4.28□□□□□ -1.72
SYNE1-233ENST00000535896 H3BNG1 76 aa4.28□□□□□ -1.72
SYNE1-233ENST00000535896 SLPIP03973 132 aa4.28□□□□□ -1.72
SYNE1-233ENST00000535896 DAD1P61803 113 aa4.28□□□□□ -1.72
SYNE1-233ENST00000535896 DIRC1Q969H9 104 aa4.28□□□□□ -1.72
SYNE1-233ENST00000535896 DSCR8Q96T75 97 aa4.28□□□□□ -1.72
SYNE1-233ENST00000535896 C11orf68Q9H3H3 251 aaKnown RBP4.28□□□□□ -1.72
SYNE1-233ENST00000535896 TRAV7A0A075B6U4 112 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms