RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 NDUFC1O43677 76 aa1.6□□□□□ -2.15
CD44-223ENST00000526553 MRPL33O75394 65 aaKnown RBP1.6□□□□□ -2.15
CD44-223ENST00000526553 IFI6P09912 130 aa1.6□□□□□ -2.15
CD44-223ENST00000526553 PYYP10082 97 aa1.6□□□□□ -2.15
CD44-223ENST00000526553 COX8AP10176 69 aa1.6□□□□□ -2.15
CD44-223ENST00000526553 CBLN1P23435 193 aa1.6□□□□□ -2.15
CD44-223ENST00000526553 DYNLT3P51808 116 aa1.6□□□□□ -2.15
CD44-223ENST00000526553 PCBD1P61457 104 aa1.6□□□□□ -2.15
CD44-223ENST00000526553 PSG9Q00887 426 aa1.6□□□□□ -2.15
CD44-223ENST00000526553 CATR1Q13166 79 aa1.6□□□□□ -2.15
CD44-223ENST00000526553 PLGLAQ15195 96 aa1.6□□□□□ -2.15
CD44-223ENST00000526553 BVES-AS1Q5T3Y7 98 aa1.6□□□□□ -2.15
CD44-223ENST00000526553 C9orf153Q5TBE3 101 aa1.6□□□□□ -2.15
CD44-223ENST00000526553 SLC48A1Q6P1K1 146 aa1.6□□□□□ -2.15
CD44-223ENST00000526553 UNQ5815/PRO19632Q6UWF5 114 aa1.6□□□□□ -2.15
CD44-223ENST00000526553 GLIPR1L1Q6UWM5 242 aa1.6□□□□□ -2.15
CD44-223ENST00000526553 MYOZ3Q8TDC0 251 aa1.6□□□□□ -2.15
CD44-223ENST00000526553 ADAT1Q9BUB4 502 aaKnown RBP1.6□□□□□ -2.15
CD44-223ENST00000526553 HIGD1AQ9Y241 93 aa1.6□□□□□ -2.15
CD44-223ENST00000526553 DNAH7Q8WXX0 4024 aa1.6□□□□□ -2.15
CD44-223ENST00000526553 COL7A1Q02388 2944 aa1.6□□□□□ -2.15
CD44-223ENST00000526553 TANC2Q9HCD6 1990 aa1.59□□□□□ -2.15
CD44-223ENST00000526553 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.59□□□□□ -2.15
CD44-223ENST00000526553 TRAV12-1A0A0B4J245 112 aa1.59□□□□□ -2.15
CD44-223ENST00000526553 UBE2L5PA0A1B0GUS4 154 aa1.59□□□□□ -2.15
CD44-223ENST00000526553 CRYM-AS1A6NIL9 109 aa1.59□□□□□ -2.15
CD44-223ENST00000526553 C2orf70A6NJV1 201 aa1.59□□□□□ -2.15
CD44-223ENST00000526553 K7EMI3 77 aa1.59□□□□□ -2.15
CD44-223ENST00000526553 NPFFO15130 113 aa1.59□□□□□ -2.15
CD44-223ENST00000526553 BCE1O60756 84 aa1.59□□□□□ -2.15
CD44-223ENST00000526553 TIMM17BO60830 172 aa1.59□□□□□ -2.15
CD44-223ENST00000526553 RBP4P02753 201 aa1.59□□□□□ -2.15
CD44-223ENST00000526553 CXCL1P09341 107 aa1.59□□□□□ -2.15
CD44-223ENST00000526553 HLA-DRB4P13762 266 aa1.59□□□□□ -2.15
CD44-223ENST00000526553 TMEM170BQ5T4T1 132 aa1.59□□□□□ -2.15
CD44-223ENST00000526553 TEN1Q86WV5 123 aa1.59□□□□□ -2.15
CD44-223ENST00000526553 OR10AC1Q8NH08 325 aa1.59□□□□□ -2.15
CD44-223ENST00000526553 DYNLRB2Q8TF09 96 aa1.59□□□□□ -2.15
CD44-223ENST00000526553 C4orf3Q8WVX3 66 aa1.59□□□□□ -2.15
CD44-223ENST00000526553 PSENENQ9NZ42 101 aa1.59□□□□□ -2.15
CD44-223ENST00000526553 HLA-DRB4X5D2U9 266 aa1.59□□□□□ -2.15
CD44-223ENST00000526553 HYDINQ4G0P3 5121 aa1.59□□□□□ -2.15
CD44-223ENST00000526553 TENM3Q9P273 2699 aa1.59□□□□□ -2.16
CD44-223ENST00000526553 DNAH1Q9P2D7 4330 aa1.59□□□□□ -2.16
CD44-223ENST00000526553 IGLV3-32A0A0A0MS00 114 aa1.58□□□□□ -2.16
CD44-223ENST00000526553 TRAV13-1A0A0B4J241 112 aa1.58□□□□□ -2.16
CD44-223ENST00000526553 LOC107984156A0A0G2JMH3 177 aa1.58□□□□□ -2.16
CD44-223ENST00000526553 A0A1B0GWA3 101 aa1.58□□□□□ -2.16
CD44-223ENST00000526553 CLPSL1A2RUU4 121 aa1.58□□□□□ -2.16
CD44-223ENST00000526553 A6NIN4 97 aa1.58□□□□□ -2.16
CD44-223ENST00000526553 SYS1-DBNDD2H3BUS1 97 aa1.58□□□□□ -2.16
CD44-223ENST00000526553 C3orf79P0CE67 100 aa1.58□□□□□ -2.16
CD44-223ENST00000526553 PLNP26678 52 aa1.58□□□□□ -2.16
CD44-223ENST00000526553 GLRXP35754 106 aa1.58□□□□□ -2.16
CD44-223ENST00000526553 NPC2P61916 151 aa1.58□□□□□ -2.16
CD44-223ENST00000526553 CCL8P80075 99 aa1.58□□□□□ -2.16
CD44-223ENST00000526553 ATXN8Q156A1 80 aa1.58□□□□□ -2.16
CD44-223ENST00000526553 DEFB112Q30KQ8 113 aa1.58□□□□□ -2.16
CD44-223ENST00000526553 SOSTDC1Q6X4U4 206 aa1.58□□□□□ -2.16
CD44-223ENST00000526553 Q6ZUT4 128 aa1.58□□□□□ -2.16
CD44-223ENST00000526553 ARL17AQ8IVW1 177 aa1.58□□□□□ -2.16
CD44-223ENST00000526553 NPCDR1Q9BY65 106 aa1.58□□□□□ -2.16
CD44-223ENST00000526553 LYSTQ99698 3801 aa1.58□□□□□ -2.16
CD44-223ENST00000526553 TENM2Q9NT68 2774 aa1.57□□□□□ -2.16
CD44-223ENST00000526553 MYMXA0A1B0GTQ4 84 aa1.57□□□□□ -2.16
CD44-223ENST00000526553 LOC107986453A0A1B0GWG9 222 aa1.57□□□□□ -2.16
CD44-223ENST00000526553 CPSF4LA6NMK7 179 aaKnown RBP1.57□□□□□ -2.16
CD44-223ENST00000526553 H3BVH4 76 aa1.57□□□□□ -2.16
CD44-223ENST00000526553 HMGN2P05204 90 aaKnown RBP1.57□□□□□ -2.16
CD44-223ENST00000526553 RNASE3P12724 160 aaKnown RBP1.57□□□□□ -2.16
CD44-223ENST00000526553 RPL7P18124 248 aaKnown RBP1.57□□□□□ -2.16
CD44-223ENST00000526553 CKS2P33552 79 aa1.57□□□□□ -2.16
CD44-223ENST00000526553 HBBP68871 147 aa1.57□□□□□ -2.16
CD44-223ENST00000526553 CIRBPQ14011 172 aaKnown RBP1.57□□□□□ -2.16
CD44-223ENST00000526553 C1orf140Q5VVS0 124 aa1.57□□□□□ -2.16
CD44-223ENST00000526553 UNQ6190/PRO20217Q6UXQ8 127 aa1.57□□□□□ -2.16
CD44-223ENST00000526553 RPS27LQ71UM5 84 aaKnown RBP1.57□□□□□ -2.16
CD44-223ENST00000526553 LINC00643Q86TS7 51 aa1.57□□□□□ -2.16
CD44-223ENST00000526553 Q8N2B8 174 aa1.57□□□□□ -2.16
CD44-223ENST00000526553 OTOSQ8NHW6 89 aa1.57□□□□□ -2.16
CD44-223ENST00000526553 TSKUQ8WUA8 353 aa1.57□□□□□ -2.16
CD44-223ENST00000526553 SPTSSAQ969W0 71 aa1.57□□□□□ -2.16
CD44-223ENST00000526553 IFI27L1Q96BM0 104 aa1.57□□□□□ -2.16
CD44-223ENST00000526553 LINC00526Q96FQ7 95 aa1.57□□□□□ -2.16
CD44-223ENST00000526553 PRELID3AQ96N28 172 aa1.57□□□□□ -2.16
CD44-223ENST00000526553 TRGV9Q99603 122 aa1.57□□□□□ -2.16
CD44-223ENST00000526553 WFDC6Q9BQY6 131 aa1.57□□□□□ -2.16
CD44-223ENST00000526553 NXT2Q9NPJ8 142 aaKnown RBP1.57□□□□□ -2.16
CD44-223ENST00000526553 R4GMQ9 66 aa1.57□□□□□ -2.16
CD44-223ENST00000526553 PLECQ15149 4684 aaKnown RBP1.57□□□□□ -2.16
CD44-223ENST00000526553 HUWE1Q7Z6Z7 4374 aaKnown RBP1.57□□□□□ -2.16
CD44-223ENST00000526553 HECTD4Q9Y4D8 3996 aa1.56□□□□□ -2.16
CD44-223ENST00000526553 TRAV12-2A0A075B6T6 113 aa1.56□□□□□ -2.16
CD44-223ENST00000526553 TRAV3A0A0B4J244 114 aa1.56□□□□□ -2.16
CD44-223ENST00000526553 K7EIL1 84 aa1.56□□□□□ -2.16
CD44-223ENST00000526553 M0R2P5 195 aa1.56□□□□□ -2.16
CD44-223ENST00000526553 HMGN4O00479 90 aa1.56□□□□□ -2.16
CD44-223ENST00000526553 HBDP02042 147 aa1.56□□□□□ -2.16
CD44-223ENST00000526553 COX7CP15954 63 aa1.56□□□□□ -2.16
CD44-223ENST00000526553 FCER1GP30273 86 aa1.56□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms