RNA–Protein interactions for RNA: ENST00000523867.5

HDAC9-227, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best)

Gene HDAC9, Length 2,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-227ENST00000523867 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.14□□□□□ -1.59
HDAC9-227ENST00000523867 MPLKIPQ8TAP9 179 aa5.14□□□□□ -1.59
HDAC9-227ENST00000523867 SMIM11BQ8TCY0 68 aa5.14□□□□□ -1.59
HDAC9-227ENST00000523867 TMEM256-PLSCR3K7ERE1 68 aa5.14□□□□□ -1.59
HDAC9-227ENST00000523867 C6orf99Q4VX62 202 aa5.14□□□□□ -1.59
HDAC9-227ENST00000523867 IGHV3OR16-12A0A075B7B8 117 aa5.13□□□□□ -1.59
HDAC9-227ENST00000523867 LECT2O14960 151 aa5.13□□□□□ -1.59
HDAC9-227ENST00000523867 FAM229BQ4G0N7 80 aa5.13□□□□□ -1.59
HDAC9-227ENST00000523867 LINC00242Q5T6M2 205 aa5.13□□□□□ -1.59
HDAC9-227ENST00000523867 ZNF706Q9Y5V0 76 aaPredicted RBP5.13□□□□□ -1.59
HDAC9-227ENST00000523867 MP68P56378 58 aa5.13□□□□□ -1.59
HDAC9-227ENST00000523867 NOTCH2Q04721 2471 aa5.13□□□□□ -1.59
HDAC9-227ENST00000523867 PDZD2O15018 2839 aa5.13□□□□□ -1.59
HDAC9-227ENST00000523867 A0A096LNT2 108 aa5.12□□□□□ -1.59
HDAC9-227ENST00000523867 TRGV1A0A0A0MS02 117 aa5.12□□□□□ -1.59
HDAC9-227ENST00000523867 TRAV10A0A0B4J240 114 aa5.12□□□□□ -1.59
HDAC9-227ENST00000523867 K7EQD1 137 aa5.12□□□□□ -1.59
HDAC9-227ENST00000523867 TEP1Q99973 2627 aaKnown RBP5.11□□□□□ -1.59
HDAC9-227ENST00000523867 IGKV2-28A0A075B6P5 120 aa5.11□□□□□ -1.59
HDAC9-227ENST00000523867 SMIM1B2RUZ4 78 aa5.11□□□□□ -1.59
HDAC9-227ENST00000523867 IGKV2D-28P01615 120 aa5.11□□□□□ -1.59
HDAC9-227ENST00000523867 RPL36AP83881 106 aaKnown RBP5.11□□□□□ -1.59
HDAC9-227ENST00000523867 DEFB114Q30KQ6 69 aa5.11□□□□□ -1.59
HDAC9-227ENST00000523867 C4orf3Q8WVX3 66 aa5.11□□□□□ -1.59
HDAC9-227ENST00000523867 RPL36ALQ969Q0 106 aaKnown RBP5.11□□□□□ -1.59
HDAC9-227ENST00000523867 SETD2Q9BYW2 2564 aaPredicted RBP5.11□□□□□ -1.59
HDAC9-227ENST00000523867 LOC110117498A0A087WWA1 95 aa5.11□□□□□ -1.59
HDAC9-227ENST00000523867 LINC01547P58512 204 aaPredicted RBP5.11□□□□□ -1.59
HDAC9-227ENST00000523867 SEC61BP60468 96 aaKnown RBP5.11□□□□□ -1.59
HDAC9-227ENST00000523867 TMEM254Q8TBM7 123 aa5.11□□□□□ -1.59
HDAC9-227ENST00000523867 SND1-IT1Q9HBX3 110 aa5.11□□□□□ -1.59
HDAC9-227ENST00000523867 APCP25054 2843 aa5.11□□□□□ -1.59
HDAC9-227ENST00000523867 FSHBP01225 129 aa5.1□□□□□ -1.59
HDAC9-227ENST00000523867 FUSP35637 526 aaKnown RBP eCLIP5.1□□□□□ -1.59
HDAC9-227ENST00000523867 CHCHD10Q8WYQ3 142 aaPredicted RBP5.1□□□□□ -1.59
HDAC9-227ENST00000523867 LY6G6DO95868 133 aa5.1□□□□□ -1.59
HDAC9-227ENST00000523867 PRR3P79522 188 aaKnown RBP5.1□□□□□ -1.59
HDAC9-227ENST00000523867 Q6ZTC4 211 aa5.1□□□□□ -1.59
HDAC9-227ENST00000523867 NF1P21359 2839 aa5.1□□□□□ -1.59
HDAC9-227ENST00000523867 TRBV10-1A0A0K0K1A3 114 aa5.1□□□□□ -1.59
HDAC9-227ENST00000523867 NTM-AS1Q6ZSK4 140 aa5.1□□□□□ -1.59
HDAC9-227ENST00000523867 PDE6GP18545 87 aa5.09□□□□□ -1.59
HDAC9-227ENST00000523867 ODF3L2Q3SX64 289 aa5.09□□□□□ -1.59
HDAC9-227ENST00000523867 CDC42SE2Q9NRR3 84 aa5.09□□□□□ -1.59
HDAC9-227ENST00000523867 C2CD3Q4AC94 2353 aa5.09□□□□□ -1.59
HDAC9-227ENST00000523867 SONP18583 2426 aaKnown RBP5.09□□□□□ -1.59
HDAC9-227ENST00000523867 AKAP9Q99996 3911 aa5.09□□□□□ -1.59
HDAC9-227ENST00000523867 UBE2L6O14933 153 aa5.09□□□□□ -1.6
HDAC9-227ENST00000523867 KRTAP10-9P60411 292 aa5.09□□□□□ -1.6
HDAC9-227ENST00000523867 NREPQ16612 68 aa5.09□□□□□ -1.6
HDAC9-227ENST00000523867 Q6ZTI0 123 aa5.09□□□□□ -1.6
HDAC9-227ENST00000523867 CCDC168Q8NDH2 2452 aa5.08□□□□□ -1.6
HDAC9-227ENST00000523867 hDV103S1A0JD37 113 aa5.08□□□□□ -1.6
HDAC9-227ENST00000523867 H3BQ85 93 aa5.08□□□□□ -1.6
HDAC9-227ENST00000523867 SLPIP03973 132 aa5.08□□□□□ -1.6
HDAC9-227ENST00000523867 Q6ZQT0 140 aa5.08□□□□□ -1.6
HDAC9-227ENST00000523867 Q8N814 137 aa5.08□□□□□ -1.6
HDAC9-227ENST00000523867 LCA10Q71F78 164 aa5.07□□□□□ -1.6
HDAC9-227ENST00000523867 Q8N3U1 123 aa5.07□□□□□ -1.6
HDAC9-227ENST00000523867 NOP10Q9NPE3 64 aaKnown RBP5.07□□□□□ -1.6
HDAC9-227ENST00000523867 NOTCH3Q9UM47 2321 aa5.06□□□□□ -1.6
HDAC9-227ENST00000523867 ZNF469Q96JG9 3925 aaPredicted RBP5.06□□□□□ -1.6
HDAC9-227ENST00000523867 TOMM7Q9P0U1 55 aa5.06□□□□□ -1.6
HDAC9-227ENST00000523867 F8P00451 2351 aa5.06□□□□□ -1.6
HDAC9-227ENST00000523867 TRGV2A0A075B6R0 118 aa5.05□□□□□ -1.6
HDAC9-227ENST00000523867 TRBV6-4A0A1B0GX49 114 aa5.05□□□□□ -1.6
HDAC9-227ENST00000523867 UBE2BP63146 152 aa5.05□□□□□ -1.6
HDAC9-227ENST00000523867 HAMPP81172 84 aa5.05□□□□□ -1.6
HDAC9-227ENST00000523867 C9orf66Q5T8R8 295 aa5.05□□□□□ -1.6
HDAC9-227ENST00000523867 COX7B2Q8TF08 81 aa5.05□□□□□ -1.6
HDAC9-227ENST00000523867 LINC00588Q9Y4M8 146 aa5.05□□□□□ -1.6
HDAC9-227ENST00000523867 HIVEP1P15822 2718 aa5.05□□□□□ -1.6
HDAC9-227ENST00000523867 IGKV3OR2-268A0A0C4DH90 116 aa5.05□□□□□ -1.6
HDAC9-227ENST00000523867 BPY2O14599 106 aa5.05□□□□□ -1.6
HDAC9-227ENST00000523867 CCL18P55774 89 aa5.05□□□□□ -1.6
HDAC9-227ENST00000523867 DEFB113Q30KQ7 82 aa5.05□□□□□ -1.6
HDAC9-227ENST00000523867 Q6ZRP5 223 aa5.05□□□□□ -1.6
HDAC9-227ENST00000523867 WNK1Q9H4A3 2382 aa5.05□□□□□ -1.6
HDAC9-227ENST00000523867 NIPBLQ6KC79 2804 aaeCLIP5.04□□□□□ -1.6
HDAC9-227ENST00000523867 IGHV6-1A0A0B4J1U7 121 aa5.04□□□□□ -1.6
HDAC9-227ENST00000523867 LINC00158P58513 81 aa5.04□□□□□ -1.6
HDAC9-227ENST00000523867 TRGV4A0A0C4DH28 118 aa5.03□□□□□ -1.6
HDAC9-227ENST00000523867 CDK2AP2O75956 126 aa5.03□□□□□ -1.6
HDAC9-227ENST00000523867 C16orf74Q96GX8 76 aa5.03□□□□□ -1.6
HDAC9-227ENST00000523867 REG3GQ6UW15 175 aa5.03□□□□□ -1.6
HDAC9-227ENST00000523867 IGLV9-49A0A0B4J1Y8 123 aa5.02□□□□□ -1.61
HDAC9-227ENST00000523867 IGHV3OR16-9A0A0B4J2B5 98 aa5.02□□□□□ -1.61
HDAC9-227ENST00000523867 CR1P17927 2039 aa5.02□□□□□ -1.61
HDAC9-227ENST00000523867 MTORP42345 2549 aa5.02□□□□□ -1.61
HDAC9-227ENST00000523867 IGLV4-60A0A075B6I1 120 aa5.02□□□□□ -1.61
HDAC9-227ENST00000523867 RNASE1P07998 156 aaKnown RBP5.02□□□□□ -1.61
HDAC9-227ENST00000523867 GIG44P09565 113 aaPredicted RBP5.02□□□□□ -1.61
HDAC9-227ENST00000523867 OCR1Q9BZK8 76 aa5.02□□□□□ -1.61
HDAC9-227ENST00000523867 ITPR3Q14573 2671 aa5.02□□□□□ -1.61
HDAC9-227ENST00000523867 FLNAP21333 2647 aaKnown RBP5.02□□□□□ -1.61
HDAC9-227ENST00000523867 ACANP16112 2415 aa5.01□□□□□ -1.61
HDAC9-227ENST00000523867 CMC4P56277 68 aaPredicted RBP5.01□□□□□ -1.61
HDAC9-227ENST00000523867 KIAA0087Q14695 138 aa5.01□□□□□ -1.61
HDAC9-227ENST00000523867 PHF5AQ7RTV0 110 aaKnown RBP5.01□□□□□ -1.61
HDAC9-227ENST00000523867 TRBV6-8A0A0A6YYG3 113 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms