RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 ZNF292O60281 2723 aa8.91□□□□□ -0.98
USP53-209ENST00000514665 LINC00846Q9NV44 126 aa8.91□□□□□ -0.98
USP53-209ENST00000514665 C4orf48Q5BLP8 95 aa8.9□□□□□ -0.98
USP53-209ENST00000514665 MUC7Q8TAX7 377 aa8.9□□□□□ -0.99
USP53-209ENST00000514665 C16orf95Q9H693 158 aa8.89□□□□□ -0.99
USP53-209ENST00000514665 HELZ2Q9BYK8 2649 aaKnown RBP8.89□□□□□ -0.99
USP53-209ENST00000514665 DSPP15924 2871 aaKnown RBP8.89□□□□□ -0.99
USP53-209ENST00000514665 SOSTDC1Q6X4U4 206 aa8.88□□□□□ -0.99
USP53-209ENST00000514665 SPINK6Q6UWN8 80 aa8.88□□□□□ -0.99
USP53-209ENST00000514665 LOC107984640A0A0U1RRK4 108 aa8.87□□□□□ -0.99
USP53-209ENST00000514665 ATMQ13315 3056 aa8.86□□□□□ -0.99
USP53-209ENST00000514665 LYPD5Q6UWN5 251 aa8.86□□□□□ -0.99
USP53-209ENST00000514665 HRCT1Q6UXD1 115 aa8.86□□□□□ -0.99
USP53-209ENST00000514665 Q8N3U1 123 aa8.85□□□□□ -0.99
USP53-209ENST00000514665 FAM30AQ9NZY2 134 aa8.85□□□□□ -0.99
USP53-209ENST00000514665 NDUFC2-KCTD14E9PQ53 114 aa8.85□□□□□ -0.99
USP53-209ENST00000514665 C1orf137Q5JT78 98 aa8.85□□□□□ -0.99
USP53-209ENST00000514665 A0A0U1RQV1 116 aa8.84□□□□□ -0.99
USP53-209ENST00000514665 Q6ZRU5 148 aa8.84□□□□□ -0.99
USP53-209ENST00000514665 IL17DQ8TAD2 202 aa8.84□□□□□ -0.99
USP53-209ENST00000514665 LINC00575Q6W349 94 aa8.83□□□□□ -1
USP53-209ENST00000514665 FAM218AQ96MZ4 157 aa8.83□□□□□ -1
USP53-209ENST00000514665 SPTSSBQ8NFR3 76 aa8.83□□□□□ -1
USP53-209ENST00000514665 IGLV5-45A0A087WSX0 123 aa8.82□□□□□ -1
USP53-209ENST00000514665 M0QXV9 152 aa8.82□□□□□ -1
USP53-209ENST00000514665 IGLV9-49A0A0B4J1Y8 123 aa8.82□□□□□ -1
USP53-209ENST00000514665 NDUFC1O43677 76 aa8.82□□□□□ -1
USP53-209ENST00000514665 TRAV7A0A075B6U4 112 aa8.82□□□□□ -1
USP53-209ENST00000514665 TEP1Q99973 2627 aaKnown RBP8.82□□□□□ -1
USP53-209ENST00000514665 FHL3Q13643 280 aa8.81□□□□□ -1
USP53-209ENST00000514665 PLAC8L1A1L4L8 177 aa8.81□□□□□ -1
USP53-209ENST00000514665 DCHS1Q96JQ0 3298 aa8.8□□□□□ -1
USP53-209ENST00000514665 Q6ZVQ6 151 aa8.8□□□□□ -1
USP53-209ENST00000514665 COL12A1Q99715 3063 aa8.8□□□□□ -1
USP53-209ENST00000514665 KLK9Q2XQG4 91 aa8.8□□□□□ -1
USP53-209ENST00000514665 C10orf25Q5T742 122 aa8.78□□□□□ -1
USP53-209ENST00000514665 Q8N9L7 120 aa8.78□□□□□ -1
USP53-209ENST00000514665 TRBV7-7A0A0K0K1E9 115 aa8.77□□□□□ -1.01
USP53-209ENST00000514665 DEFB116Q30KQ4 102 aa8.77□□□□□ -1.01
USP53-209ENST00000514665 EIF4EBP3O60516 100 aaPredicted RBP8.76□□□□□ -1.01
USP53-209ENST00000514665 X6R8D5 127 aa8.76□□□□□ -1.01
USP53-209ENST00000514665 LINC01547P58512 204 aaPredicted RBP8.75□□□□□ -1.01
USP53-209ENST00000514665 LINC01561Q8N1V8 128 aa8.75□□□□□ -1.01
USP53-209ENST00000514665 LAMA5O15230 3695 aa8.75□□□□□ -1.01
USP53-209ENST00000514665 REG3GQ6UW15 175 aa8.75□□□□□ -1.01
USP53-209ENST00000514665 SBSPONQ8IVN8 264 aa8.75□□□□□ -1.01
USP53-209ENST00000514665 LINC00208Q96KT6 92 aa8.75□□□□□ -1.01
USP53-209ENST00000514665 C2orf48Q96LS8 159 aa8.75□□□□□ -1.01
USP53-209ENST00000514665 LITAFQ99732 161 aa8.75□□□□□ -1.01
USP53-209ENST00000514665 A0A087WSZ3 146 aa8.75□□□□□ -1.01
USP53-209ENST00000514665 TEX15Q9BXT5 2789 aa8.73□□□□□ -1.01
USP53-209ENST00000514665 ATP5EP56381 51 aaPredicted RBP8.73□□□□□ -1.01
USP53-209ENST00000514665 LY6G6CO95867 125 aa8.73□□□□□ -1.01
USP53-209ENST00000514665 PRLHP81277 87 aa8.73□□□□□ -1.01
USP53-209ENST00000514665 ESRGQ1W209 222 aa8.73□□□□□ -1.01
USP53-209ENST00000514665 MRPL55Q7Z7F7 128 aaKnown RBP8.73□□□□□ -1.01
USP53-209ENST00000514665 C6orf48Q9UBA6 75 aa8.73□□□□□ -1.01
USP53-209ENST00000514665 SMIM26A0A096LP01 95 aa8.72□□□□□ -1.01
USP53-209ENST00000514665 FSHBP01225 129 aa8.72□□□□□ -1.01
USP53-209ENST00000514665 CASC2Q6XLA1 102 aa8.72□□□□□ -1.01
USP53-209ENST00000514665 DMXL1Q9Y485 3027 aa8.71□□□□□ -1.01
USP53-209ENST00000514665 C7orf33Q8WU49 177 aa8.71□□□□□ -1.01
USP53-209ENST00000514665 ZFHX4Q86UP3 3567 aa8.71□□□□□ -1.02
USP53-209ENST00000514665 SPATA3Q8NHX4 192 aa8.7□□□□□ -1.02
USP53-209ENST00000514665 TMEM254Q8TBM7 123 aa8.69□□□□□ -1.02
USP53-209ENST00000514665 Q9BRP9 147 aa8.69□□□□□ -1.02
USP53-209ENST00000514665 GCN1Q92616 2671 aaKnown RBP8.69□□□□□ -1.02
USP53-209ENST00000514665 C22orf24Q9Y442 160 aa8.69□□□□□ -1.02
USP53-209ENST00000514665 DMXL2Q8TDJ6 3036 aa8.68□□□□□ -1.02
USP53-209ENST00000514665 KIAA0087Q14695 138 aa8.68□□□□□ -1.02
USP53-209ENST00000514665 LINC00474Q9P2X8 69 aa8.68□□□□□ -1.02
USP53-209ENST00000514665 NOTCH1P46531 2555 aa8.68□□□□□ -1.02
USP53-209ENST00000514665 PRYO14603 147 aa8.68□□□□□ -1.02
USP53-209ENST00000514665 ZNF706Q9Y5V0 76 aaPredicted RBP8.68□□□□□ -1.02
USP53-209ENST00000514665 SERP1Q9Y6X1 66 aa8.68□□□□□ -1.02
USP53-209ENST00000514665 STAB1Q9NY15 2570 aa8.67□□□□□ -1.02
USP53-209ENST00000514665 SETXQ7Z333 2677 aaKnown RBP8.67□□□□□ -1.02
USP53-209ENST00000514665 A6NED7 52 aa8.65□□□□□ -1.02
USP53-209ENST00000514665 LINC01556Q5JQF7 62 aa8.65□□□□□ -1.02
USP53-209ENST00000514665 SEC61GP60059 68 aa8.65□□□□□ -1.03
USP53-209ENST00000514665 LINC00167Q96N53 147 aa8.65□□□□□ -1.03
USP53-209ENST00000514665 ZZEF1O43149 2961 aa8.64□□□□□ -1.03
USP53-209ENST00000514665 SPENQ96T58 3664 aaKnown RBP8.64□□□□□ -1.03
USP53-209ENST00000514665 CIRBP-AS1Q8TBR5 109 aa8.64□□□□□ -1.03
USP53-209ENST00000514665 IGHV6-1A0A0B4J1U7 121 aa8.63□□□□□ -1.03
USP53-209ENST00000514665 UNC79Q9P2D8 2635 aa8.63□□□□□ -1.03
USP53-209ENST00000514665 Q8NAQ8 132 aa8.63□□□□□ -1.03
USP53-209ENST00000514665 SMCR5Q8TEV8 140 aa8.63□□□□□ -1.03
USP53-209ENST00000514665 PCOTHQ58A44 107 aa8.62□□□□□ -1.03
USP53-209ENST00000514665 V9GYY9 64 aa8.62□□□□□ -1.03
USP53-209ENST00000514665 ADGRG4Q8IZF6 3080 aa8.62□□□□□ -1.03
USP53-209ENST00000514665 F8WDY8 70 aa8.62□□□□□ -1.03
USP53-209ENST00000514665 CXCL6P80162 114 aa8.62□□□□□ -1.03
USP53-209ENST00000514665 UBR5O95071 2799 aaPredicted RBP8.61□□□□□ -1.03
USP53-209ENST00000514665 NUPR2A6NF83 97 aa8.6□□□□□ -1.03
USP53-209ENST00000514665 NBEAL1Q6ZS30 2694 aa8.6□□□□□ -1.03
USP53-209ENST00000514665 NBEAL2Q6ZNJ1 2754 aa8.6□□□□□ -1.03
USP53-209ENST00000514665 COL6A5A8TX70 2615 aa8.6□□□□□ -1.03
USP53-209ENST00000514665 CRYGAP11844 174 aa8.6□□□□□ -1.03
USP53-209ENST00000514665 A0A096LNT2 108 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms