RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 TRAV7A0A075B6U4 112 aa6.67□□□□□ -1.34
VCAN-210ENST00000513960 LINC01547P58512 204 aaPredicted RBP6.67□□□□□ -1.34
VCAN-210ENST00000513960 MRPL55Q7Z7F7 128 aaKnown RBP6.67□□□□□ -1.34
VCAN-210ENST00000513960 SERP1Q9Y6X1 66 aa6.67□□□□□ -1.34
VCAN-210ENST00000513960 Q8N3U1 123 aa6.66□□□□□ -1.34
VCAN-210ENST00000513960 XAGE1AQ9HD64 81 aa6.66□□□□□ -1.34
VCAN-210ENST00000513960 Q6ZVQ6 151 aa6.66□□□□□ -1.34
VCAN-210ENST00000513960 SMR3AQ99954 134 aa6.65□□□□□ -1.34
VCAN-210ENST00000513960 Q8N9L7 120 aa6.65□□□□□ -1.35
VCAN-210ENST00000513960 OBSCN-AS1Q96MR7 158 aa6.65□□□□□ -1.35
VCAN-210ENST00000513960 SETXQ7Z333 2677 aaKnown RBP6.65□□□□□ -1.35
VCAN-210ENST00000513960 NOTCH2Q04721 2471 aa6.65□□□□□ -1.35
VCAN-210ENST00000513960 SPTSSBQ8NFR3 76 aa6.65□□□□□ -1.35
VCAN-210ENST00000513960 CHCHD10Q8WYQ3 142 aaPredicted RBP6.65□□□□□ -1.35
VCAN-210ENST00000513960 LINC00474Q9P2X8 69 aa6.65□□□□□ -1.35
VCAN-210ENST00000513960 ITPR2Q14571 2701 aa6.64□□□□□ -1.35
VCAN-210ENST00000513960 NBEAL2Q6ZNJ1 2754 aa6.64□□□□□ -1.35
VCAN-210ENST00000513960 NBPF19A0A087WUL8 3843 aa6.64□□□□□ -1.35
VCAN-210ENST00000513960 NDUFC2-KCTD14E9PQ53 114 aa6.64□□□□□ -1.35
VCAN-210ENST00000513960 ZNF561-AS1K7EIQ3 104 aa6.64□□□□□ -1.35
VCAN-210ENST00000513960 C6orf223Q8N319 242 aa6.64□□□□□ -1.35
VCAN-210ENST00000513960 AKAP9Q99996 3911 aa6.63□□□□□ -1.35
VCAN-210ENST00000513960 IGHV4-28A0A0C4DH34 117 aa6.63□□□□□ -1.35
VCAN-210ENST00000513960 SPAG11BQ08648 103 aa6.63□□□□□ -1.35
VCAN-210ENST00000513960 Q8IZM0 81 aa6.63□□□□□ -1.35
VCAN-210ENST00000513960 TENM4Q6N022 2769 aa6.63□□□□□ -1.35
VCAN-210ENST00000513960 UNQ6190/PRO20217Q6UXQ8 127 aa6.63□□□□□ -1.35
VCAN-210ENST00000513960 TM2D3Q9BRN9 247 aa6.63□□□□□ -1.35
VCAN-210ENST00000513960 HELZ2Q9BYK8 2649 aaKnown RBP6.63□□□□□ -1.35
VCAN-210ENST00000513960 H7BZZ5 65 aa6.63□□□□□ -1.35
VCAN-210ENST00000513960 NIPBLQ6KC79 2804 aaeCLIP6.63□□□□□ -1.35
VCAN-210ENST00000513960 DEFB105AQ8NG35 78 aa6.62□□□□□ -1.35
VCAN-210ENST00000513960 FASNP49327 2511 aaKnown RBP6.62□□□□□ -1.35
VCAN-210ENST00000513960 SMIM26A0A096LP01 95 aa6.62□□□□□ -1.35
VCAN-210ENST00000513960 LRCOL1A6NCL2 159 aa6.62□□□□□ -1.35
VCAN-210ENST00000513960 LINC00575Q6W349 94 aa6.62□□□□□ -1.35
VCAN-210ENST00000513960 LINC00482Q8N8I6 264 aa6.62□□□□□ -1.35
VCAN-210ENST00000513960 TRBV7-6A0A0J9YX20 115 aa6.61□□□□□ -1.35
VCAN-210ENST00000513960 REG3AQ06141 175 aa6.61□□□□□ -1.35
VCAN-210ENST00000513960 Q6ZQT0 140 aa6.61□□□□□ -1.35
VCAN-210ENST00000513960 PRO0628Q9UI54 55 aa6.61□□□□□ -1.35
VCAN-210ENST00000513960 GCN1Q92616 2671 aaKnown RBP6.61□□□□□ -1.35
VCAN-210ENST00000513960 UNC79Q9P2D8 2635 aa6.61□□□□□ -1.35
VCAN-210ENST00000513960 PDZD2O15018 2839 aa6.61□□□□□ -1.35
VCAN-210ENST00000513960 MIFP14174 115 aa6.61□□□□□ -1.35
VCAN-210ENST00000513960 NANOS2P60321 138 aaKnown RBP6.61□□□□□ -1.35
VCAN-210ENST00000513960 C3orf84H3BNL1 204 aa6.6□□□□□ -1.35
VCAN-210ENST00000513960 LY6G6DO95868 133 aa6.6□□□□□ -1.35
VCAN-210ENST00000513960 KRTAP10-3P60369 221 aa6.6□□□□□ -1.35
VCAN-210ENST00000513960 NREPQ16612 68 aa6.6□□□□□ -1.35
VCAN-210ENST00000513960 SPATA3Q8NHX4 192 aa6.6□□□□□ -1.35
VCAN-210ENST00000513960 WIPF1O43516 503 aa6.6□□□□□ -1.35
VCAN-210ENST00000513960 DIRC1Q969H9 104 aa6.6□□□□□ -1.35
VCAN-210ENST00000513960 PRO0255Q9UI72 69 aa6.6□□□□□ -1.35
VCAN-210ENST00000513960 C10orf25Q5T742 122 aa6.59□□□□□ -1.35
VCAN-210ENST00000513960 KLK12Q9UKR0 248 aa6.59□□□□□ -1.35
VCAN-210ENST00000513960 C9orf66Q5T8R8 295 aa6.59□□□□□ -1.35
VCAN-210ENST00000513960 TRBV10-3A0A0K0K1G6 114 aa6.59□□□□□ -1.35
VCAN-210ENST00000513960 BPY2O14599 106 aa6.58□□□□□ -1.36
VCAN-210ENST00000513960 CD164L2Q6UWJ8 174 aa6.58□□□□□ -1.36
VCAN-210ENST00000513960 MUC7Q8TAX7 377 aa6.58□□□□□ -1.36
VCAN-210ENST00000513960 CELA1Q9UNI1 258 aa6.58□□□□□ -1.36
VCAN-210ENST00000513960 HIGD2BQ4VC39 106 aa6.58□□□□□ -1.36
VCAN-210ENST00000513960 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.58□□□□□ -1.36
VCAN-210ENST00000513960 X6R8D5 127 aa6.58□□□□□ -1.36
VCAN-210ENST00000513960 COX7BP24311 80 aa6.57□□□□□ -1.36
VCAN-210ENST00000513960 DEFB135Q30KP9 77 aa6.57□□□□□ -1.36
VCAN-210ENST00000513960 CYSRT1A8MQ03 144 aa6.57□□□□□ -1.36
VCAN-210ENST00000513960 LINC00612Q8N6U2 182 aa6.57□□□□□ -1.36
VCAN-210ENST00000513960 TMEM254Q8TBM7 123 aa6.57□□□□□ -1.36
VCAN-210ENST00000513960 LYRM9A8MSI8 78 aa6.56□□□□□ -1.36
VCAN-210ENST00000513960 FUSP35637 526 aaKnown RBP eCLIP6.56□□□□□ -1.36
VCAN-210ENST00000513960 PRR4Q16378 134 aa6.56□□□□□ -1.36
VCAN-210ENST00000513960 LYPD5Q6UWN5 251 aa6.56□□□□□ -1.36
VCAN-210ENST00000513960 Q8NDZ9 215 aa6.56□□□□□ -1.36
VCAN-210ENST00000513960 INAFM1C9JVW0 142 aa6.56□□□□□ -1.36
VCAN-210ENST00000513960 APOC4P55056 127 aa6.56□□□□□ -1.36
VCAN-210ENST00000513960 A0A1B0GUV1 79 aa6.55□□□□□ -1.36
VCAN-210ENST00000513960 ANK3Q12955 4377 aaKnown RBP6.55□□□□□ -1.36
VCAN-210ENST00000513960 HECTD1Q9ULT8 2610 aa6.55□□□□□ -1.36
VCAN-210ENST00000513960 PDE6GP18545 87 aa6.54□□□□□ -1.36
VCAN-210ENST00000513960 COX17Q14061 63 aa6.54□□□□□ -1.36
VCAN-210ENST00000513960 FAM30AQ9NZY2 134 aa6.54□□□□□ -1.36
VCAN-210ENST00000513960 ZNF73O43830 326 aaPredicted RBP6.54□□□□□ -1.36
VCAN-210ENST00000513960 KLKP1Q107X0 134 aa6.54□□□□□ -1.36
VCAN-210ENST00000513960 FP248Q71RG6 208 aaPredicted RBP6.54□□□□□ -1.36
VCAN-210ENST00000513960 LINC00167Q96N53 147 aa6.54□□□□□ -1.36
VCAN-210ENST00000513960 F8P00451 2351 aa6.53□□□□□ -1.36
VCAN-210ENST00000513960 CAMK2N2Q96S95 79 aa6.53□□□□□ -1.36
VCAN-210ENST00000513960 HIGD2AQ9BW72 106 aa6.53□□□□□ -1.36
VCAN-210ENST00000513960 NDUFC1O43677 76 aa6.52□□□□□ -1.37
VCAN-210ENST00000513960 KIAA0087Q14695 138 aa6.52□□□□□ -1.37
VCAN-210ENST00000513960 LOC110117498A0A087WWA1 95 aa6.52□□□□□ -1.37
VCAN-210ENST00000513960 PRYO14603 147 aa6.51□□□□□ -1.37
VCAN-210ENST00000513960 CXCL6P80162 114 aa6.51□□□□□ -1.37
VCAN-210ENST00000513960 SPART-AS1P0CW21 52 aa6.5□□□□□ -1.37
VCAN-210ENST00000513960 FAM229BQ4G0N7 80 aa6.5□□□□□ -1.37
VCAN-210ENST00000513960 PMAIP1Q13794 54 aa6.48□□□□□ -1.37
VCAN-210ENST00000513960 ATP5EP56381 51 aaPredicted RBP6.48□□□□□ -1.37
VCAN-210ENST00000513960 PSPHP1O15172 72 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms