RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 KRTAP24-1Q3LI83 254 aa2.43□□□□□ -2.02
USP53-205ENST00000509769 AHCTF1Q8WYP5 2266 aa2.42□□□□□ -2.02
USP53-205ENST00000509769 ANKRD11Q6UB99 2663 aaPredicted RBP2.42□□□□□ -2.02
USP53-205ENST00000509769 C10orf142B7Z368 130 aa2.42□□□□□ -2.02
USP53-205ENST00000509769 PRR34Q9NV39 138 aa2.42□□□□□ -2.02
USP53-205ENST00000509769 Q5VV11 94 aa2.42□□□□□ -2.02
USP53-205ENST00000509769 LINC01006Q8NI28 216 aa2.42□□□□□ -2.02
USP53-205ENST00000509769 CIRBP-AS1Q8TBR5 109 aa2.42□□□□□ -2.02
USP53-205ENST00000509769 FBN3Q75N90 2809 aa2.42□□□□□ -2.02
USP53-205ENST00000509769 KLK9Q2XQG4 91 aa2.42□□□□□ -2.02
USP53-205ENST00000509769 FP248Q71RG6 208 aaPredicted RBP2.42□□□□□ -2.02
USP53-205ENST00000509769 Q8NAQ8 132 aa2.42□□□□□ -2.02
USP53-205ENST00000509769 K7EQZ3 153 aa2.41□□□□□ -2.02
USP53-205ENST00000509769 KRTAP10-9P60411 292 aa2.41□□□□□ -2.02
USP53-205ENST00000509769 LINC01556Q5JQF7 62 aa2.41□□□□□ -2.02
USP53-205ENST00000509769 IGF2RP11717 2491 aa2.41□□□□□ -2.02
USP53-205ENST00000509769 ARHGAP32A7KAX9 2087 aa2.41□□□□□ -2.02
USP53-205ENST00000509769 MYO7BQ6PIF6 2116 aa2.41□□□□□ -2.02
USP53-205ENST00000509769 Q6ZPA2 131 aa2.41□□□□□ -2.02
USP53-205ENST00000509769 LINC00528Q8N1L1 170 aa2.41□□□□□ -2.02
USP53-205ENST00000509769 CACNA1EQ15878 2313 aa2.41□□□□□ -2.02
USP53-205ENST00000509769 DEFB136Q30KP8 78 aa2.41□□□□□ -2.02
USP53-205ENST00000509769 APC2O95996 2303 aa2.41□□□□□ -2.02
USP53-205ENST00000509769 LINC00315P59091 139 aa2.4□□□□□ -2.02
USP53-205ENST00000509769 C9orf129Q5T035 196 aaKnown RBP2.4□□□□□ -2.02
USP53-205ENST00000509769 COX6B2Q6YFQ2 88 aa2.4□□□□□ -2.02
USP53-205ENST00000509769 PTPRQQ9UMZ3 2332 aa2.4□□□□□ -2.02
USP53-205ENST00000509769 WISP2O76076 250 aa2.4□□□□□ -2.02
USP53-205ENST00000509769 GAS8-AS1O95177 125 aa2.4□□□□□ -2.02
USP53-205ENST00000509769 LY6G6CO95867 125 aa2.4□□□□□ -2.02
USP53-205ENST00000509769 IGLV5-48A0A075B6I7 105 aa2.4□□□□□ -2.03
USP53-205ENST00000509769 A0A1B0GU33 70 aa2.4□□□□□ -2.03
USP53-205ENST00000509769 APLNQ9ULZ1 77 aa2.4□□□□□ -2.03
USP53-205ENST00000509769 KIAA2026Q5HYC2 2103 aa2.4□□□□□ -2.03
USP53-205ENST00000509769 PROK1P58294 105 aa2.4□□□□□ -2.03
USP53-205ENST00000509769 ROMO1P60602 79 aa2.4□□□□□ -2.03
USP53-205ENST00000509769 PRR3P79522 188 aaKnown RBP2.4□□□□□ -2.03
USP53-205ENST00000509769 HCFC1P51610 2035 aa2.39□□□□□ -2.03
USP53-205ENST00000509769 PI4KAP42356 2102 aa2.39□□□□□ -2.03
USP53-205ENST00000509769 ABCA7Q8IZY2 2146 aa2.39□□□□□ -2.03
USP53-205ENST00000509769 SVILO95425 2214 aa2.39□□□□□ -2.03
USP53-205ENST00000509769 MDC1Q14676 2089 aaKnown RBP2.39□□□□□ -2.03
USP53-205ENST00000509769 CSAG1Q6PB30 78 aa2.38□□□□□ -2.03
USP53-205ENST00000509769 SPRR4Q96PI1 79 aa2.38□□□□□ -2.03
USP53-205ENST00000509769 LMO4P61968 165 aa2.38□□□□□ -2.03
USP53-205ENST00000509769 SPTBN2O15020 2390 aa2.38□□□□□ -2.03
USP53-205ENST00000509769 ESPL1Q14674 2120 aa2.38□□□□□ -2.03
USP53-205ENST00000509769 C9orf163Q8N9P6 203 aa2.38□□□□□ -2.03
USP53-205ENST00000509769 ST20-AS1Q8NBB2 130 aa2.38□□□□□ -2.03
USP53-205ENST00000509769 PRR26Q8N8Z3 221 aa2.38□□□□□ -2.03
USP53-205ENST00000509769 SETXQ7Z333 2677 aaKnown RBP2.38□□□□□ -2.03
USP53-205ENST00000509769 A6NN06 94 aa2.37□□□□□ -2.03
USP53-205ENST00000509769 SMR3AQ99954 134 aa2.37□□□□□ -2.03
USP53-205ENST00000509769 F5P12259 2224 aa2.37□□□□□ -2.03
USP53-205ENST00000509769 HECTD1Q9ULT8 2610 aa2.37□□□□□ -2.03
USP53-205ENST00000509769 PTPN13Q12923 2485 aa2.37□□□□□ -2.03
USP53-205ENST00000509769 MED13LQ71F56 2210 aa2.37□□□□□ -2.03
USP53-205ENST00000509769 HRES1P13985 223 aa2.37□□□□□ -2.03
USP53-205ENST00000509769 MED12Q93074 2177 aa2.37□□□□□ -2.03
USP53-205ENST00000509769 IGLV1-51P01701 117 aa2.37□□□□□ -2.03
USP53-205ENST00000509769 C16orf95Q9H693 158 aa2.37□□□□□ -2.03
USP53-205ENST00000509769 ASXL3Q9C0F0 2248 aa2.37□□□□□ -2.03
USP53-205ENST00000509769 SPATA8Q6RVD6 105 aa2.37□□□□□ -2.03
USP53-205ENST00000509769 SNRNP200O75643 2136 aaKnown RBP2.36□□□□□ -2.03
USP53-205ENST00000509769 ZGRF1Q86YA3 2104 aa2.36□□□□□ -2.03
USP53-205ENST00000509769 SPTAN1Q13813 2472 aaKnown RBP2.36□□□□□ -2.03
USP53-205ENST00000509769 ZFYVE26Q68DK2 2539 aa2.36□□□□□ -2.03
USP53-205ENST00000509769 C18orf65Q6ZTR6 163 aa2.36□□□□□ -2.03
USP53-205ENST00000509769 EXPH5Q8NEV8 1989 aa2.36□□□□□ -2.03
USP53-205ENST00000509769 PRR14LQ5THK1 2151 aa2.36□□□□□ -2.03
USP53-205ENST00000509769 INTS1Q8N201 2190 aaKnown RBP2.36□□□□□ -2.03
USP53-205ENST00000509769 IGFL1Q6UW32 110 aa2.36□□□□□ -2.03
USP53-205ENST00000509769 MED12LQ86YW9 2145 aa2.36□□□□□ -2.03
USP53-205ENST00000509769 RAI1Q7Z5J4 1906 aaPredicted RBP2.36□□□□□ -2.03
USP53-205ENST00000509769 RP1P56715 2156 aa2.35□□□□□ -2.03
USP53-205ENST00000509769 SPINK7P58062 85 aa2.35□□□□□ -2.03
USP53-205ENST00000509769 DEFB1P60022 68 aa2.35□□□□□ -2.03
USP53-205ENST00000509769 MYOFQ9NZM1 2061 aa2.35□□□□□ -2.03
USP53-205ENST00000509769 ANAPC1Q9H1A4 1944 aa2.35□□□□□ -2.03
USP53-205ENST00000509769 ABCA12Q86UK0 2595 aa2.35□□□□□ -2.03
USP53-205ENST00000509769 IGLV5-52A0A0A0MRZ9 124 aa2.35□□□□□ -2.03
USP53-205ENST00000509769 KRTAP25-1Q3LHN0 102 aa2.35□□□□□ -2.03
USP53-205ENST00000509769 ODF3L2Q3SX64 289 aa2.35□□□□□ -2.03
USP53-205ENST00000509769 F8P00451 2351 aa2.35□□□□□ -2.03
USP53-205ENST00000509769 NUP210LQ5VU65 1888 aa2.35□□□□□ -2.03
USP53-205ENST00000509769 NDUFAF8A1L188 74 aa2.35□□□□□ -2.03
USP53-205ENST00000509769 MED13Q9UHV7 2174 aa2.35□□□□□ -2.03
USP53-205ENST00000509769 A8MTW9 85 aa2.34□□□□□ -2.03
USP53-205ENST00000509769 POLEQ07864 2286 aa2.34□□□□□ -2.03
USP53-205ENST00000509769 RPL37P61927 97 aaKnown RBP2.34□□□□□ -2.03
USP53-205ENST00000509769 IGSF10Q6WRI0 2623 aa2.34□□□□□ -2.03
USP53-205ENST00000509769 UNC13CQ8NB66 2214 aa2.34□□□□□ -2.03
USP53-205ENST00000509769 CNTRLQ7Z7A1 2325 aa2.34□□□□□ -2.04
USP53-205ENST00000509769 SHANK1Q9Y566 2161 aa2.34□□□□□ -2.04
USP53-205ENST00000509769 DOCK7Q96N67 2140 aa2.34□□□□□ -2.04
USP53-205ENST00000509769 TEP1Q99973 2627 aaKnown RBP2.33□□□□□ -2.04
USP53-205ENST00000509769 Q8N377 158 aa2.33□□□□□ -2.04
USP53-205ENST00000509769 Q96NJ1 140 aa2.33□□□□□ -2.04
USP53-205ENST00000509769 FER1L5A0AVI2 2057 aa2.33□□□□□ -2.04
USP53-205ENST00000509769 PRAC1Q96KF2 57 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms