RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 A0A0J9YXY3 114 aa3.44□□□□□ -1.86
CSMD3-208ENST00000497026 LCE6AA0A183 80 aa3.44□□□□□ -1.86
CSMD3-208ENST00000497026 KRTAP9-6A8MVA2 160 aa3.44□□□□□ -1.86
CSMD3-208ENST00000497026 COX7A2LO14548 114 aa3.44□□□□□ -1.86
CSMD3-208ENST00000497026 DEFB4AO15263 64 aa3.44□□□□□ -1.86
CSMD3-208ENST00000497026 RBMY1A1P0DJD3 496 aaKnown RBP3.44□□□□□ -1.86
CSMD3-208ENST00000497026 RBMY1CP0DJD4 496 aa3.44□□□□□ -1.86
CSMD3-208ENST00000497026 PRB4P10163 310 aaPredicted RBP3.44□□□□□ -1.86
CSMD3-208ENST00000497026 S100A4P26447 101 aaKnown RBP3.44□□□□□ -1.86
CSMD3-208ENST00000497026 SEC61BP60468 96 aaKnown RBP3.44□□□□□ -1.86
CSMD3-208ENST00000497026 RBMY1FQ15415 496 aaKnown RBP3.44□□□□□ -1.86
CSMD3-208ENST00000497026 SMCR5Q8TEV8 140 aa3.44□□□□□ -1.86
CSMD3-208ENST00000497026 CLEC2BQ92478 149 aa3.44□□□□□ -1.86
CSMD3-208ENST00000497026 FAM19A4Q96LR4 140 aa3.44□□□□□ -1.86
CSMD3-208ENST00000497026 TMEM243Q9BU79 118 aa3.44□□□□□ -1.86
CSMD3-208ENST00000497026 XCL2Q9UBD3 114 aa3.44□□□□□ -1.86
CSMD3-208ENST00000497026 LENEPQ9Y5L5 61 aa3.44□□□□□ -1.86
CSMD3-208ENST00000497026 PLECQ15149 4684 aaKnown RBP3.44□□□□□ -1.86
CSMD3-208ENST00000497026 SMIM26A0A096LP01 95 aa3.44□□□□□ -1.86
CSMD3-208ENST00000497026 I3L3M4 83 aa3.44□□□□□ -1.86
CSMD3-208ENST00000497026 VCYO14598 125 aa3.44□□□□□ -1.86
CSMD3-208ENST00000497026 C14orf178Q8N769 122 aaPredicted RBP3.44□□□□□ -1.86
CSMD3-208ENST00000497026 UPK3BQ9BT76 320 aa3.44□□□□□ -1.86
CSMD3-208ENST00000497026 PHLDA3Q9Y5J5 127 aa3.44□□□□□ -1.86
CSMD3-208ENST00000497026 ALMS1Q8TCU4 4167 aa3.43□□□□□ -1.86
CSMD3-208ENST00000497026 TRAV21A0A0B4J279 112 aa3.43□□□□□ -1.86
CSMD3-208ENST00000497026 IGKV3D-20A0A0C4DH25 116 aa3.43□□□□□ -1.86
CSMD3-208ENST00000497026 IGIPA6NJ69 53 aa3.43□□□□□ -1.86
CSMD3-208ENST00000497026 USP17L23D6RBM5 183 aa3.43□□□□□ -1.86
CSMD3-208ENST00000497026 OXTP01178 125 aa3.43□□□□□ -1.86
CSMD3-208ENST00000497026 MIFP14174 115 aa3.43□□□□□ -1.86
CSMD3-208ENST00000497026 DAZ2Q13117 558 aaKnown RBP3.43□□□□□ -1.86
CSMD3-208ENST00000497026 CIRBPQ14011 172 aaKnown RBP3.43□□□□□ -1.86
CSMD3-208ENST00000497026 DAZ4Q86SG3 579 aaKnown RBP3.43□□□□□ -1.86
CSMD3-208ENST00000497026 C1orf158Q8N1D5 194 aa3.43□□□□□ -1.86
CSMD3-208ENST00000497026 RPL39LQ96EH5 51 aaKnown RBP3.43□□□□□ -1.86
CSMD3-208ENST00000497026 DAZ3Q9NR90 486 aaKnown RBP3.43□□□□□ -1.86
CSMD3-208ENST00000497026 CELA1Q9UNI1 258 aa3.43□□□□□ -1.86
CSMD3-208ENST00000497026 PKIGQ9Y2B9 76 aa3.43□□□□□ -1.86
CSMD3-208ENST00000497026 NBEAL2Q6ZNJ1 2754 aa3.42□□□□□ -1.86
CSMD3-208ENST00000497026 TENM2Q9NT68 2774 aa3.42□□□□□ -1.86
CSMD3-208ENST00000497026 LYSTQ99698 3801 aa3.42□□□□□ -1.86
CSMD3-208ENST00000497026 NUPR2A6NF83 97 aa3.42□□□□□ -1.86
CSMD3-208ENST00000497026 BCE1O60756 84 aa3.42□□□□□ -1.86
CSMD3-208ENST00000497026 SPINK13Q1W4C9 94 aa3.42□□□□□ -1.86
CSMD3-208ENST00000497026 C11orf45Q8TAV5 145 aa3.42□□□□□ -1.86
CSMD3-208ENST00000497026 IGHV3OR16-12A0A075B7B8 117 aa3.41□□□□□ -1.86
CSMD3-208ENST00000497026 TRBV6-5A0A0K0K1A5 114 aa3.41□□□□□ -1.86
CSMD3-208ENST00000497026 PLAC8L1A1L4L8 177 aa3.41□□□□□ -1.86
CSMD3-208ENST00000497026 NDUFC1O43677 76 aa3.41□□□□□ -1.86
CSMD3-208ENST00000497026 NXPH4O95158 308 aa3.41□□□□□ -1.86
CSMD3-208ENST00000497026 PRM2P04554 102 aa3.41□□□□□ -1.86
CSMD3-208ENST00000497026 NDUFA12Q9UI09 145 aa3.41□□□□□ -1.86
CSMD3-208ENST00000497026 IGHV1-58A0A0C4DH39 117 aa3.4□□□□□ -1.87
CSMD3-208ENST00000497026 EPM2AB3EWF7 344 aa3.4□□□□□ -1.87
CSMD3-208ENST00000497026 TSHBP01222 138 aa3.4□□□□□ -1.87
CSMD3-208ENST00000497026 BAALC-AS2P0C853 105 aa3.4□□□□□ -1.87
CSMD3-208ENST00000497026 IGHV3-30-3P0DP02 117 aa3.4□□□□□ -1.87
CSMD3-208ENST00000497026 LINC00336Q6ZUF6 198 aa3.4□□□□□ -1.87
CSMD3-208ENST00000497026 BRK1Q8WUW1 75 aa3.4□□□□□ -1.87
CSMD3-208ENST00000497026 LITAFQ99732 161 aa3.4□□□□□ -1.87
CSMD3-208ENST00000497026 LAMTOR3Q9UHA4 124 aa3.4□□□□□ -1.87
CSMD3-208ENST00000497026 KMT2AQ03164 3969 aa3.4□□□□□ -1.87
CSMD3-208ENST00000497026 IGHV3-64A0A075B6Q5 118 aa3.39□□□□□ -1.87
CSMD3-208ENST00000497026 TRAV12-3A0A0B4J271 114 aa3.39□□□□□ -1.87
CSMD3-208ENST00000497026 IGKV3D-7A0A0C4DH55 119 aa3.39□□□□□ -1.87
CSMD3-208ENST00000497026 TRBV27A0A0K0K1C4 114 aa3.39□□□□□ -1.87
CSMD3-208ENST00000497026 NDUFA1O15239 70 aa3.39□□□□□ -1.87
CSMD3-208ENST00000497026 INSP01308 110 aa3.39□□□□□ -1.87
CSMD3-208ENST00000497026 RNASE4P34096 147 aaKnown RBP3.39□□□□□ -1.87
CSMD3-208ENST00000497026 POLR2KP53803 58 aaKnown RBP3.39□□□□□ -1.87
CSMD3-208ENST00000497026 RPL39P62891 51 aaKnown RBP3.39□□□□□ -1.87
CSMD3-208ENST00000497026 C6orf226Q5I0X4 101 aa3.39□□□□□ -1.87
CSMD3-208ENST00000497026 APLNQ9ULZ1 77 aa3.39□□□□□ -1.87
CSMD3-208ENST00000497026 VPS13DQ5THJ4 4388 aa3.39□□□□□ -1.87
CSMD3-208ENST00000497026 EPPK1P58107 5090 aaKnown RBP3.38□□□□□ -1.87
CSMD3-208ENST00000497026 TRAV7A0A075B6U4 112 aa3.38□□□□□ -1.87
CSMD3-208ENST00000497026 TRBV10-3A0A0K0K1G6 114 aa3.38□□□□□ -1.87
CSMD3-208ENST00000497026 LY6G6CO95867 125 aa3.38□□□□□ -1.87
CSMD3-208ENST00000497026 CRPP02741 224 aa3.38□□□□□ -1.87
CSMD3-208ENST00000497026 PRR9Q5T870 116 aa3.38□□□□□ -1.87
CSMD3-208ENST00000497026 CYSTM1Q9H1C7 97 aa3.38□□□□□ -1.87
CSMD3-208ENST00000497026 UBE2D4Q9Y2X8 147 aa3.38□□□□□ -1.87
CSMD3-208ENST00000497026 IGLV4-3A0A075B6K6 122 aa3.37□□□□□ -1.87
CSMD3-208ENST00000497026 DEFB131BA0A096LNP1 70 aa3.37□□□□□ -1.87
CSMD3-208ENST00000497026 TRAV13-2A0A0B4J235 113 aa3.37□□□□□ -1.87
CSMD3-208ENST00000497026 TRAV10A0A0B4J240 114 aa3.37□□□□□ -1.87
CSMD3-208ENST00000497026 A0A0J9YXV3 536 aa3.37□□□□□ -1.87
CSMD3-208ENST00000497026 KLLNB2CW77 178 aa3.37□□□□□ -1.87
CSMD3-208ENST00000497026 SPART-AS1P0CW21 52 aa3.37□□□□□ -1.87
CSMD3-208ENST00000497026 XCL1P47992 114 aa3.37□□□□□ -1.87
CSMD3-208ENST00000497026 KRTAP7-1Q8IUC3 87 aa3.37□□□□□ -1.87
CSMD3-208ENST00000497026 C20orf197Q8N268 126 aa3.37□□□□□ -1.87
CSMD3-208ENST00000497026 ZFAND2AQ8N6M9 145 aa3.37□□□□□ -1.87
CSMD3-208ENST00000497026 C20orf203Q8NBC4 194 aa3.37□□□□□ -1.87
CSMD3-208ENST00000497026 MUC4Q99102 2169 aa3.37□□□□□ -1.87
CSMD3-208ENST00000497026 LYRM9A8MSI8 78 aa3.36□□□□□ -1.87
CSMD3-208ENST00000497026 H0YGX0 51 aa3.36□□□□□ -1.87
CSMD3-208ENST00000497026 RBM3P98179 157 aaKnown RBP3.36□□□□□ -1.87
CSMD3-208ENST00000497026 LINC01561Q8N1V8 128 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms