RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 MLH3Q9UHC1 1453 aa-1.23□□□□□ -2.61
SMC4-223ENST00000493695 NDUFC1O43677 76 aa-1.23□□□□□ -2.61
SMC4-223ENST00000493695 ANKRD36A6QL64 1941 aa-1.23□□□□□ -2.61
SMC4-223ENST00000493695 STARD9Q9P2P6 4700 aa-1.23□□□□□ -2.61
SMC4-223ENST00000493695 SPTBN4Q9H254 2564 aa-1.24□□□□□ -2.61
SMC4-223ENST00000493695 PTPN23Q9H3S7 1636 aa-1.24□□□□□ -2.61
SMC4-223ENST00000493695 GTF2H5Q6ZYL4 71 aa-1.24□□□□□ -2.61
SMC4-223ENST00000493695 DEFB107AQ8IZN7 70 aa-1.24□□□□□ -2.61
SMC4-223ENST00000493695 VAMP8Q9BV40 100 aa-1.24□□□□□ -2.61
SMC4-223ENST00000493695 HTTP42858 3142 aa-1.24□□□□□ -2.61
SMC4-223ENST00000493695 CUX1P39880 1505 aa-1.25□□□□□ -2.61
SMC4-223ENST00000493695 ADAMTS12P58397 1594 aa-1.25□□□□□ -2.61
SMC4-223ENST00000493695 H7BZZ5 65 aa-1.25□□□□□ -2.61
SMC4-223ENST00000493695 ASIPP42127 132 aa-1.25□□□□□ -2.61
SMC4-223ENST00000493695 MRPL34Q9BQ48 92 aaKnown RBP-1.25□□□□□ -2.61
SMC4-223ENST00000493695 SARNPP82979 210 aaKnown RBP-1.26□□□□□ -2.61
SMC4-223ENST00000493695 PSMG4Q5JS54 123 aa-1.26□□□□□ -2.61
SMC4-223ENST00000493695 MON2Q7Z3U7 1717 aa-1.26□□□□□ -2.61
SMC4-223ENST00000493695 HIVEP1P15822 2718 aa-1.27□□□□□ -2.61
SMC4-223ENST00000493695 ARMS2P0C7Q2 107 aa-1.27□□□□□ -2.61
SMC4-223ENST00000493695 PMCHL1Q16048 86 aa-1.27□□□□□ -2.61
SMC4-223ENST00000493695 SAMD9Q5K651 1589 aa-1.27□□□□□ -2.61
SMC4-223ENST00000493695 HERC2O95714 4834 aa-1.28□□□□□ -2.61
SMC4-223ENST00000493695 LYSTQ99698 3801 aa-1.28□□□□□ -2.61
SMC4-223ENST00000493695 C5P01031 1676 aa-1.28□□□□□ -2.61
SMC4-223ENST00000493695 DEFB112Q30KQ8 113 aa-1.28□□□□□ -2.61
SMC4-223ENST00000493695 TRGV9Q99603 122 aa-1.28□□□□□ -2.61
SMC4-223ENST00000493695 TACC2O95359 2948 aa-1.28□□□□□ -2.61
SMC4-223ENST00000493695 EPG5Q9HCE0 2579 aa-1.28□□□□□ -2.61
SMC4-223ENST00000493695 C20orf202A1L168 122 aa-1.29□□□□□ -2.62
SMC4-223ENST00000493695 CCL22O00626 93 aa-1.29□□□□□ -2.62
SMC4-223ENST00000493695 MPC2O95563 127 aa-1.29□□□□□ -2.62
SMC4-223ENST00000493695 GNGT1P63211 74 aa-1.29□□□□□ -2.62
SMC4-223ENST00000493695 LELP1Q5T871 98 aa-1.29□□□□□ -2.62
SMC4-223ENST00000493695 DNAH9Q9NYC9 4486 aa-1.29□□□□□ -2.62
SMC4-223ENST00000493695 SONP18583 2426 aaKnown RBP-1.29□□□□□ -2.62
SMC4-223ENST00000493695 ABCC2Q92887 1545 aa-1.3□□□□□ -2.62
SMC4-223ENST00000493695 NRXN1Q9ULB1 1477 aa-1.3□□□□□ -2.62
SMC4-223ENST00000493695 TNRC18O15417 2968 aaPredicted RBP-1.3□□□□□ -2.62
SMC4-223ENST00000493695 RAPGEF2Q9Y4G8 1499 aa-1.31□□□□□ -2.62
SMC4-223ENST00000493695 COL14A1Q05707 1796 aaKnown RBP-1.31□□□□□ -2.62
SMC4-223ENST00000493695 AKAP9Q99996 3911 aa-1.31□□□□□ -2.62
SMC4-223ENST00000493695 GNGT2O14610 69 aa-1.31□□□□□ -2.62
SMC4-223ENST00000493695 USH2AO75445 5202 aa-1.31□□□□□ -2.62
SMC4-223ENST00000493695 NBASA2RRP1 2371 aa-1.32□□□□□ -2.62
SMC4-223ENST00000493695 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-1.32□□□□□ -2.623e-9■■■■□ 19.5
SMC4-223ENST00000493695 CLIP1P30622 1438 aa-1.32□□□□□ -2.62
SMC4-223ENST00000493695 VPS13DQ5THJ4 4388 aa-1.33□□□□□ -2.62
SMC4-223ENST00000493695 ANKRD36BQ8N2N9 1353 aa-1.33□□□□□ -2.62
SMC4-223ENST00000493695 UBR4Q5T4S7 5183 aa-1.33□□□□□ -2.62
SMC4-223ENST00000493695 UQCRHP07919 91 aa-1.33□□□□□ -2.62
SMC4-223ENST00000493695 KRTAP20-2Q3LI61 65 aa-1.33□□□□□ -2.62
SMC4-223ENST00000493695 CUBNO60494 3623 aa-1.33□□□□□ -2.62
SMC4-223ENST00000493695 HECTD1Q9ULT8 2610 aa-1.34□□□□□ -2.62
SMC4-223ENST00000493695 KNL1Q8NG31 2342 aa-1.34□□□□□ -2.62
SMC4-223ENST00000493695 DNAH3Q8TD57 4116 aa-1.34□□□□□ -2.62
SMC4-223ENST00000493695 TRAV30A0A087WSZ9 112 aa-1.34□□□□□ -2.62
SMC4-223ENST00000493695 SPTY2D1-AS1A0A0U1RR47 76 aa-1.34□□□□□ -2.62
SMC4-223ENST00000493695 MT-ATP8P03928 68 aa-1.34□□□□□ -2.62
SMC4-223ENST00000493695 BCORQ6W2J9 1755 aa-1.34□□□□□ -2.62
SMC4-223ENST00000493695 ZZEF1O43149 2961 aa-1.35□□□□□ -2.62
SMC4-223ENST00000493695 TRBV7-7A0A0K0K1E9 115 aa-1.35□□□□□ -2.63
SMC4-223ENST00000493695 TEP1Q99973 2627 aaKnown RBP-1.36□□□□□ -2.63
SMC4-223ENST00000493695 CICQ96RK0 1608 aaPredicted RBP-1.36□□□□□ -2.63
SMC4-223ENST00000493695 ITPR3Q14573 2671 aa-1.36□□□□□ -2.63
SMC4-223ENST00000493695 SERP2Q8N6R1 65 aa-1.36□□□□□ -2.63
SMC4-223ENST00000493695 CDKN2A-AS1Q9UH64 79 aa-1.36□□□□□ -2.63
SMC4-223ENST00000493695 ATOX1O00244 68 aa-1.37□□□□□ -2.63
SMC4-223ENST00000493695 PMCHL2Q9BQD1 86 aa-1.37□□□□□ -2.63
SMC4-223ENST00000493695 HIGD1BQ9P298 99 aa-1.37□□□□□ -2.63
SMC4-223ENST00000493695 QSER1Q2KHR3 1735 aa-1.37□□□□□ -2.63
SMC4-223ENST00000493695 CRYBG1Q9Y4K1 1723 aa-1.37□□□□□ -2.63
SMC4-223ENST00000493695 HMGN3Q15651 99 aa-1.38□□□□□ -2.63
SMC4-223ENST00000493695 HEPN1Q6WQI6 88 aa-1.38□□□□□ -2.63
SMC4-223ENST00000493695 WFDC13Q8IUB5 93 aa-1.38□□□□□ -2.63
SMC4-223ENST00000493695 MUC17Q685J3 4493 aa-1.38□□□□□ -2.63
SMC4-223ENST00000493695 SPG11Q96JI7 2443 aa-1.38□□□□□ -2.63
SMC4-223ENST00000493695 KIF20BQ96Q89 1820 aa-1.38□□□□□ -2.63
SMC4-223ENST00000493695 RGPD2P0DJD1 1756 aa-1.39□□□□□ -2.63
SMC4-223ENST00000493695 TMEM218A2RU14 115 aa-1.39□□□□□ -2.63
SMC4-223ENST00000493695 MT4P47944 62 aa-1.39□□□□□ -2.63
SMC4-223ENST00000493695 SPRR2FQ96RM1 72 aa-1.39□□□□□ -2.63
SMC4-223ENST00000493695 TEX14Q8IWB6 1497 aa-1.39□□□□□ -2.63
SMC4-223ENST00000493695 FYCO1Q9BQS8 1478 aa-1.39□□□□□ -2.63
SMC4-223ENST00000493695 PKHD1L1Q86WI1 4243 aa-1.39□□□□□ -2.63
SMC4-223ENST00000493695 NEBP20929 6669 aa-1.4□□□□□ -2.63
SMC4-223ENST00000493695 ALKAL2Q6UX46 152 aa-1.4□□□□□ -2.63
SMC4-223ENST00000493695 C14orf144Q96I85 54 aa-1.4□□□□□ -2.63
SMC4-223ENST00000493695 MAGI2Q86UL8 1455 aa-1.4□□□□□ -2.63
SMC4-223ENST00000493695 IGLC2P0DOY2 106 aa-1.41□□□□□ -2.64
SMC4-223ENST00000493695 IGLC3P0DOY3 106 aa-1.41□□□□□ -2.64
SMC4-223ENST00000493695 PSENENQ9NZ42 101 aa-1.41□□□□□ -2.64
SMC4-223ENST00000493695 PREX1Q8TCU6 1659 aa-1.42□□□□□ -2.64
SMC4-223ENST00000493695 S100PP25815 95 aa-1.42□□□□□ -2.64
SMC4-223ENST00000493695 CLTCQ00610 1675 aaKnown RBP-1.42□□□□□ -2.64
SMC4-223ENST00000493695 ANKHD1Q8IWZ3 2542 aaKnown RBP-1.42□□□□□ -2.64
SMC4-223ENST00000493695 DMXL1Q9Y485 3027 aa-1.42□□□□□ -2.64
SMC4-223ENST00000493695 ANKRD11Q6UB99 2663 aaPredicted RBP-1.43□□□□□ -2.64
SMC4-223ENST00000493695 PKD1L3Q7Z443 1732 aa-1.43□□□□□ -2.64
SMC4-223ENST00000493695 EPRSP07814 1512 aaKnown RBP-1.43□□□□□ -2.64
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms