RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 ARMS2P0C7Q2 107 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 BAALC-AS2P0C853 105 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 UBE2AP49459 152 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 REG3AQ06141 175 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 SYCNQ0VAF6 134 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 Q1T7F1 81 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.29□□□□□ -2.2
HMGB1-208ENST00000490788 C11orf71Q6IPW1 123 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 PHF5AQ7RTV0 110 aaKnown RBP1.29□□□□□ -2.2
HMGB1-208ENST00000490788 CAMK2N1Q7Z7J9 78 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 MUSTN1Q8IVN3 82 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 NKAPP1Q8N9T2 125 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 WFDC9Q8NEX5 89 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 DIRC1Q969H9 104 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 RNF185Q96GF1 192 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 LCE3DQ9BYE3 92 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 ICOSQ9Y6W8 199 aa1.29□□□□□ -2.2
HMGB1-208ENST00000490788 MALRD1Q5VYJ5 2156 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 ALPK2Q86TB3 2170 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 IGKV1D-42A0A075B6H8 117 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 IGLV3-32A0A0A0MS00 114 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 TRAV22A0A0B4J277 110 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 IGHV3-64DA0A0J9YX35 117 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 LINC01546A6NGU7 62 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 C16orf90A8MZG2 172 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 F8VRH5 84 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 I3L3M4 83 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 M0R1W7 72 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 NDUFC1O43677 76 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 FSTL3O95633 263 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 DNAL4O96015 105 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 IGKV1-16P04430 117 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 CHTF8P0CG12 524 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 MIFP14174 115 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 RNASE4P34096 147 aaKnown RBP1.28□□□□□ -2.2
HMGB1-208ENST00000490788 KLKP1Q107X0 134 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 PIGYQ3MUY2 71 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 C6orf99Q4VX62 202 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 LINC01554Q52M75 96 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 ATP11AUNQ6ZP68 121 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 VMO1Q7Z5L0 202 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 C11orf72Q8NBR9 251 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 KLF14Q8TD94 323 aaPredicted RBP1.28□□□□□ -2.2
HMGB1-208ENST00000490788 CHCHD10Q8WYQ3 142 aaPredicted RBP1.28□□□□□ -2.2
HMGB1-208ENST00000490788 TMEM141Q96I45 108 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 LINC00846Q9NV44 126 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 NDUFA12Q9UI09 145 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 PHLDA3Q9Y5J5 127 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 EML6Q6ZMW3 1958 aa1.28□□□□□ -2.2
HMGB1-208ENST00000490788 HMCN2Q8NDA2 5059 aa1.28□□□□□ -2.21
HMGB1-208ENST00000490788 DNAJC13O75165 2243 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 HEATR5AQ86XA9 2040 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 PHF3Q92576 2039 aaKnown RBP1.27□□□□□ -2.21
HMGB1-208ENST00000490788 CPAMD8Q8IZJ3 1885 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 RNF213Q63HN8 5207 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 ALMS1Q8TCU4 4167 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 IGLV3-12A0A075B6K2 115 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 TRAV10A0A0B4J240 114 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 TRAV12-1A0A0B4J245 112 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 IGKV1-6A0A0C4DH72 117 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 hDV103S1A0JD37 113 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 B4DSR2 109 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 HCG22E2RYF7 251 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 CHKB-CPT1BH3BT56 60 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 M0R3E3 92 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 BCE1O60756 84 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 LY6HO94772 140 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 IGLV3-25P01717 112 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 S100A4P26447 101 aaKnown RBP1.27□□□□□ -2.21
HMGB1-208ENST00000490788 TSPEAR-AS2P59090 65 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 ATP5EP2Q5VTU8 51 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 LYZL1Q6UWQ5 148 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 ENHOQ6UWT2 76 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 ZNF826PQ6ZT77 177 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 Q8N6K4 173 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 UBALD1Q8TB05 177 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 DYNLRB2Q8TF09 96 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 FAM167A-AS1Q96KT0 104 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 SCGB3A1Q96QR1 104 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 C22orf24Q9Y442 160 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 NACAE9PAV3 2078 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 EXPH5Q8NEV8 1989 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 DNAH10Q8IVF4 4471 aa1.27□□□□□ -2.21
HMGB1-208ENST00000490788 IGKV1-27A0A075B6S5 117 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 IGHV6-1A0A0B4J1U7 121 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 IGKV1-8A0A0C4DH67 115 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 IGKV1-12A0A0C4DH73 117 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 SDHAF1A6NFY7 115 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 IGIPA6NJ69 53 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 C17orf98A8MV24 154 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 COX7A2P2O60397 106 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 LHBP01229 141 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 IGKV1D-12P01611 117 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 IGLV3-27P01718 113 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 PRM2P04554 102 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 CD28P10747 220 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 BSPH1Q075Z2 132 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 DEFB116Q30KQ4 102 aa1.26□□□□□ -2.21
HMGB1-208ENST00000490788 RNASE13Q5GAN3 156 aaKnown RBP1.26□□□□□ -2.21
HMGB1-208ENST00000490788 PATE2Q6UY27 113 aa1.26□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms