RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 TIMM9Q9Y5J7 89 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 ANK2Q01484 3957 aa0.53□□□□□ -2.32
SMC4-220ENST00000488017 LAMA5O15230 3695 aa0.53□□□□□ -2.33
SMC4-220ENST00000488017 SMG1Q96Q15 3661 aaKnown RBP0.53□□□□□ -2.33
SMC4-220ENST00000488017 CENPFP49454 3210 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 MKI67P46013 3256 aaKnown RBP0.52□□□□□ -2.33
SMC4-220ENST00000488017 RTTNQ86VV8 2226 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 DNAH11Q96DT5 4516 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 COL6A6A6NMZ7 2263 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 MYCBP2O75592 4640 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 TRBV6-8A0A0A6YYG3 113 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 CTXND1A0A1B0GTU2 59 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 LINC00959A0A1B0GUT2 108 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 A0A1B0GW54 56 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 CHKB-CPT1BH3BT56 60 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 HMGN4O00479 90 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 CRPP02741 224 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 ARMS2P0C7Q2 107 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 SERF2P84101 59 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 MIR22HGQ0VDD5 57 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 FXYD3Q14802 87 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 DEFB113Q30KQ7 82 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 PSMG4Q5JS54 123 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 FAM27BQ5VT28 67 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.52□□□□□ -2.33
SMC4-220ENST00000488017 LINC00322Q6ZN03 302 aaPredicted RBP0.52□□□□□ -2.33
SMC4-220ENST00000488017 ZNF833PQ6ZTB9 187 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 C9orf163Q8N9P6 203 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 WFDC9Q8NEX5 89 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 TMEM254Q8TBM7 123 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 SCGB3A1Q96QR1 104 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 LIMD2Q9BT23 127 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 LINC00472Q9H8W2 130 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 XAGE1AQ9HD64 81 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 DYNLRB1Q9NP97 96 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 OTOGQ6ZRI0 2925 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 USF3Q68DE3 2245 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 DOPEY2Q9Y3R5 2298 aa0.52□□□□□ -2.33
SMC4-220ENST00000488017 REV3LO60673 3130 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 FRAS1Q86XX4 4008 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 MUC5BQ9HC84 5762 aaPredicted RBP0.51□□□□□ -2.33
SMC4-220ENST00000488017 IGKV3-7A0A075B6H7 116 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 IGHV3-64A0A075B6Q5 118 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 A0A087WTM6 91 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 TRAV12-1A0A0B4J245 112 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 TRAV12-3A0A0B4J271 114 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 IGKV3OR2-268A0A0C4DH90 116 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 TRBV6-5A0A0K0K1A5 114 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 ZNF815PA8K554 130 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 HIGD1CA8MV81 97 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 I3L3M4 83 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 M0R135 149 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 M0R1W7 72 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 M0R2N4 97 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 EDDM3BP56851 147 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 FXYD7P58549 80 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 TFF3Q07654 80 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 NREPQ16612 68 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 MIAQ16674 131 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 LINC01590Q5TEZ4 76 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 ATP5EP2Q5VTU8 51 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 ENHOQ6UWT2 76 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 SRCAPQ6ZRS2 3230 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 DCHS1Q96JQ0 3298 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 EP400Q96L91 3159 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 SPRR4Q96PI1 79 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 PRR15LQ9BU68 103 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 ASXL3Q9C0F0 2248 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 C5orf42Q9H799 3197 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 CELSR1Q9NYQ6 3014 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 LINC01558Q9Y6Z2 57 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 XIRP2A4UGR9 3374 aa0.51□□□□□ -2.33
SMC4-220ENST00000488017 URB1O60287 2271 aaKnown RBP0.5□□□□□ -2.33
SMC4-220ENST00000488017 CSMD3Q7Z407 3707 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 TRRAPQ9Y4A5 3859 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 TRAV21A0A0B4J279 112 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 D6R8Y8 96 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 F8VRH5 84 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 M0R3E3 92 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 MSMBP08118 114 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 SAA2P0DJI9 122 aaPredicted RBP0.5□□□□□ -2.33
SMC4-220ENST00000488017 FCER1GP30273 86 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 ZNF137PP52743 207 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 ELOF1P60002 83 aaKnown RBP0.5□□□□□ -2.33
SMC4-220ENST00000488017 RPL38P63173 70 aaKnown RBP0.5□□□□□ -2.33
SMC4-220ENST00000488017 C1orf137Q5JT78 98 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 C10orf128Q5T292 105 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 FAM74A4Q5TZK3 123 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 SPATA8Q6RVD6 105 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 CASC2Q6XLA1 102 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 MUSTN1Q8IVN3 82 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 LINC00467Q9BRT7 94 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 TTTY10Q9BZA0 68 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 C14orf132Q9NPU4 83 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 BRCA2P51587 3418 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 ABCA1O95477 2261 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 UNC80Q8N2C7 3258 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 DNAH8Q96JB1 4490 aa0.5□□□□□ -2.33
SMC4-220ENST00000488017 TNRC18O15417 2968 aaPredicted RBP0.49□□□□□ -2.33
SMC4-220ENST00000488017 ASCC3Q8N3C0 2202 aaKnown RBP0.49□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms