RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 PI4KAP42356 2102 aa1.54□□□□□ -2.16
USP48-209ENST00000487880 BRWD1Q9NSI6 2320 aa1.54□□□□□ -2.16
USP48-209ENST00000487880 A0A087WVE0 104 aa1.54□□□□□ -2.16
USP48-209ENST00000487880 LOC110117498A0A087WWA1 95 aa1.54□□□□□ -2.16
USP48-209ENST00000487880 TRBV7-4A0A0J9YYF1 115 aa1.54□□□□□ -2.16
USP48-209ENST00000487880 F8WEM9 126 aa1.54□□□□□ -2.16
USP48-209ENST00000487880 BUB1B-PAK6H3BSN5 160 aa1.54□□□□□ -2.16
USP48-209ENST00000487880 M0QY20 66 aa1.54□□□□□ -2.16
USP48-209ENST00000487880 CRPP02741 224 aa1.54□□□□□ -2.16
USP48-209ENST00000487880 MGPP08493 103 aa1.54□□□□□ -2.16
USP48-209ENST00000487880 RPL39P62891 51 aaKnown RBP1.54□□□□□ -2.16
USP48-209ENST00000487880 DEFB114Q30KQ6 69 aa1.54□□□□□ -2.16
USP48-209ENST00000487880 KTN1-AS1Q86SY8 53 aa1.54□□□□□ -2.16
USP48-209ENST00000487880 WFDC11Q8NEX6 87 aa1.54□□□□□ -2.16
USP48-209ENST00000487880 C11orf68Q9H3H3 251 aaKnown RBP1.54□□□□□ -2.16
USP48-209ENST00000487880 CENPFP49454 3210 aa1.54□□□□□ -2.16
USP48-209ENST00000487880 GOLGB1Q14789 3259 aaKnown RBP1.54□□□□□ -2.16
USP48-209ENST00000487880 FREM1Q5H8C1 2179 aa1.54□□□□□ -2.16
USP48-209ENST00000487880 F5P12259 2224 aa1.54□□□□□ -2.16
USP48-209ENST00000487880 PDE4DIPQ5VU43 2346 aa1.54□□□□□ -2.16
USP48-209ENST00000487880 TRAV23DV6A0A075B6W5 121 aa1.53□□□□□ -2.16
USP48-209ENST00000487880 A0A1B0GW54 56 aa1.53□□□□□ -2.16
USP48-209ENST00000487880 CLPSL1A2RUU4 121 aa1.53□□□□□ -2.16
USP48-209ENST00000487880 TFF1P04155 84 aa1.53□□□□□ -2.16
USP48-209ENST00000487880 CCL4P13236 92 aa1.53□□□□□ -2.16
USP48-209ENST00000487880 CCL3L1P16619 93 aa1.53□□□□□ -2.16
USP48-209ENST00000487880 SNRPD3P62318 126 aaKnown RBP1.53□□□□□ -2.16
USP48-209ENST00000487880 UBE2BP63146 152 aa1.53□□□□□ -2.16
USP48-209ENST00000487880 PHF5AQ7RTV0 110 aaKnown RBP1.53□□□□□ -2.16
USP48-209ENST00000487880 NAV3Q8IVL0 2385 aa1.53□□□□□ -2.16
USP48-209ENST00000487880 TMEM254Q8TBM7 123 aa1.53□□□□□ -2.16
USP48-209ENST00000487880 C14orf132Q9NPU4 83 aa1.53□□□□□ -2.16
USP48-209ENST00000487880 EP400Q96L91 3159 aa1.53□□□□□ -2.17
USP48-209ENST00000487880 CNTRLQ7Z7A1 2325 aa1.52□□□□□ -2.17
USP48-209ENST00000487880 TRAV12-3A0A0B4J271 114 aa1.52□□□□□ -2.17
USP48-209ENST00000487880 H3BUA1 57 aa1.52□□□□□ -2.17
USP48-209ENST00000487880 NDUFA4O00483 81 aa1.52□□□□□ -2.17
USP48-209ENST00000487880 UBE2L6O14933 153 aa1.52□□□□□ -2.17
USP48-209ENST00000487880 MINOS1Q5TGZ0 78 aa1.52□□□□□ -2.17
USP48-209ENST00000487880 ENHOQ6UWT2 76 aa1.52□□□□□ -2.17
USP48-209ENST00000487880 Q8N6K4 173 aa1.52□□□□□ -2.17
USP48-209ENST00000487880 BPESC1Q9GZL8 116 aa1.52□□□□□ -2.17
USP48-209ENST00000487880 CYP4F30PQ9H0H9 118 aa1.52□□□□□ -2.17
USP48-209ENST00000487880 LINC00474Q9P2X8 69 aa1.52□□□□□ -2.17
USP48-209ENST00000487880 U3KQA8 63 aa1.52□□□□□ -2.17
USP48-209ENST00000487880 ASCC3Q8N3C0 2202 aaKnown RBP1.52□□□□□ -2.17
USP48-209ENST00000487880 FLG2Q5D862 2391 aaPredicted RBP1.51□□□□□ -2.17
USP48-209ENST00000487880 MALRD1Q5VYJ5 2156 aa1.51□□□□□ -2.17
USP48-209ENST00000487880 ZGRF1Q86YA3 2104 aa1.51□□□□□ -2.17
USP48-209ENST00000487880 IGHV3-64A0A075B6Q5 118 aa1.51□□□□□ -2.17
USP48-209ENST00000487880 LCE6AA0A183 80 aa1.51□□□□□ -2.17
USP48-209ENST00000487880 TRBV6-4A0A1B0GX49 114 aa1.51□□□□□ -2.17
USP48-209ENST00000487880 hDV103S1A0JD37 113 aa1.51□□□□□ -2.17
USP48-209ENST00000487880 IGKV2-29A2NJV5 120 aaPredicted RBP1.51□□□□□ -2.17
USP48-209ENST00000487880 NDUFB1O75438 58 aa1.51□□□□□ -2.17
USP48-209ENST00000487880 ELOF1P60002 83 aaKnown RBP1.51□□□□□ -2.17
USP48-209ENST00000487880 NREPQ16612 68 aa1.51□□□□□ -2.17
USP48-209ENST00000487880 ASB16-AS1Q495Z4 193 aa1.51□□□□□ -2.17
USP48-209ENST00000487880 SOSTDC1Q6X4U4 206 aa1.51□□□□□ -2.17
USP48-209ENST00000487880 ATP11AUNQ6ZP68 121 aa1.51□□□□□ -2.17
USP48-209ENST00000487880 Q6ZQT0 140 aa1.51□□□□□ -2.17
USP48-209ENST00000487880 Q8N814 137 aa1.51□□□□□ -2.17
USP48-209ENST00000487880 SMIM11BQ8TCY0 68 aa1.51□□□□□ -2.17
USP48-209ENST00000487880 LINC00467Q9BRT7 94 aa1.51□□□□□ -2.17
USP48-209ENST00000487880 LIMD2Q9BT23 127 aa1.51□□□□□ -2.17
USP48-209ENST00000487880 CDKN2A-AS1Q9UH64 79 aa1.51□□□□□ -2.17
USP48-209ENST00000487880 CEP350Q5VT06 3117 aa1.51□□□□□ -2.17
USP48-209ENST00000487880 ASXL3Q9C0F0 2248 aa1.51□□□□□ -2.17
USP48-209ENST00000487880 CUL9Q8IWT3 2517 aa1.5□□□□□ -2.17
USP48-209ENST00000487880 ABCA1O95477 2261 aa1.5□□□□□ -2.17
USP48-209ENST00000487880 ZFHX2Q9C0A1 2572 aaPredicted RBP1.5□□□□□ -2.17
USP48-209ENST00000487880 TRBV6-8A0A0A6YYG3 113 aa1.5□□□□□ -2.17
USP48-209ENST00000487880 TRBV10-1A0A0K0K1A3 114 aa1.5□□□□□ -2.17
USP48-209ENST00000487880 NCR3O14931 201 aa1.5□□□□□ -2.17
USP48-209ENST00000487880 APELAP0DMC3 54 aa1.5□□□□□ -2.17
USP48-209ENST00000487880 CCL5P13501 91 aa1.5□□□□□ -2.17
USP48-209ENST00000487880 COX17Q14061 63 aa1.5□□□□□ -2.17
USP48-209ENST00000487880 DEFB108BQ8NET1 73 aa1.5□□□□□ -2.17
USP48-209ENST00000487880 USMG5Q96IX5 58 aa1.5□□□□□ -2.17
USP48-209ENST00000487880 SNURFQ9Y675 71 aa1.5□□□□□ -2.17
USP48-209ENST00000487880 KNL1Q8NG31 2342 aa1.5□□□□□ -2.17
USP48-209ENST00000487880 TRAV10A0A0B4J240 114 aa1.49□□□□□ -2.17
USP48-209ENST00000487880 TRAV22A0A0B4J277 110 aa1.49□□□□□ -2.17
USP48-209ENST00000487880 A8MTW9 85 aa1.49□□□□□ -2.17
USP48-209ENST00000487880 M0R378 163 aa1.49□□□□□ -2.17
USP48-209ENST00000487880 CCL18P55774 89 aa1.49□□□□□ -2.17
USP48-209ENST00000487880 HAMPP81172 84 aa1.49□□□□□ -2.17
USP48-209ENST00000487880 FAM74A4Q5TZK3 123 aa1.49□□□□□ -2.17
USP48-209ENST00000487880 LCA10Q71F78 164 aa1.49□□□□□ -2.17
USP48-209ENST00000487880 DIRC1Q969H9 104 aa1.49□□□□□ -2.17
USP48-209ENST00000487880 DNAJC13O75165 2243 aa1.49□□□□□ -2.17
USP48-209ENST00000487880 CACNA1AO00555 2505 aa1.48□□□□□ -2.17
USP48-209ENST00000487880 MUC4Q99102 2169 aa1.48□□□□□ -2.17
USP48-209ENST00000487880 CACNA1EQ15878 2313 aa1.48□□□□□ -2.17
USP48-209ENST00000487880 TRGV2A0A075B6R0 118 aa1.48□□□□□ -2.17
USP48-209ENST00000487880 LOC101927531A0A1B0GV80 90 aa1.48□□□□□ -2.17
USP48-209ENST00000487880 COX7BP24311 80 aa1.48□□□□□ -2.17
USP48-209ENST00000487880 COX6A2Q02221 97 aa1.48□□□□□ -2.17
USP48-209ENST00000487880 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.48□□□□□ -2.17
USP48-209ENST00000487880 LINC00575Q6W349 94 aa1.48□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms