RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 MT1AP04731 61 aa-1.2□□□□□ -2.6
VPS50-217ENST00000485140 PLECQ15149 4684 aaKnown RBP-1.2□□□□□ -2.6
VPS50-217ENST00000485140 VAMP8Q9BV40 100 aa-1.2□□□□□ -2.6
VPS50-217ENST00000485140 PDCD11Q14690 1871 aaKnown RBP-1.2□□□□□ -2.6
VPS50-217ENST00000485140 EDC4Q6P2E9 1401 aaKnown RBP-1.21□□□□□ -2.6
VPS50-217ENST00000485140 TRAV30A0A087WSZ9 112 aa-1.21□□□□□ -2.6
VPS50-217ENST00000485140 K7EP13 123 aa-1.21□□□□□ -2.6
VPS50-217ENST00000485140 KRTAP19-6Q3LI70 58 aa-1.21□□□□□ -2.6
VPS50-217ENST00000485140 C6orf201Q7Z4U5 140 aa-1.21□□□□□ -2.6
VPS50-217ENST00000485140 TOP2BQ02880 1626 aa-1.22□□□□□ -2.6
VPS50-217ENST00000485140 MARF1Q9Y4F3 1742 aaKnown RBP-1.22□□□□□ -2.6
VPS50-217ENST00000485140 H3BQF6 201 aa-1.22□□□□□ -2.6
VPS50-217ENST00000485140 SNAPC5O75971 98 aa-1.22□□□□□ -2.6
VPS50-217ENST00000485140 HEPN1Q6WQI6 88 aa-1.22□□□□□ -2.6
VPS50-217ENST00000485140 SVBPQ8N300 66 aa-1.22□□□□□ -2.6
VPS50-217ENST00000485140 ZZEF1O43149 2961 aa-1.22□□□□□ -2.6
VPS50-217ENST00000485140 VPS13BQ7Z7G8 4022 aa-1.23□□□□□ -2.61
VPS50-217ENST00000485140 LYSTQ99698 3801 aa-1.23□□□□□ -2.61
VPS50-217ENST00000485140 ANK3Q12955 4377 aaKnown RBP-1.23□□□□□ -2.61
VPS50-217ENST00000485140 SLIT1O75093 1534 aa-1.23□□□□□ -2.61
VPS50-217ENST00000485140 CRYM-AS1A6NIL9 109 aa-1.23□□□□□ -2.61
VPS50-217ENST00000485140 KRTDAPP60985 99 aa-1.23□□□□□ -2.61
VPS50-217ENST00000485140 MRPL34Q9BQ48 92 aaKnown RBP-1.23□□□□□ -2.61
VPS50-217ENST00000485140 MTORP42345 2549 aa-1.23□□□□□ -2.61
VPS50-217ENST00000485140 KALRNO60229 2985 aa-1.23□□□□□ -2.61
VPS50-217ENST00000485140 LRRC37AA6NMS7 1700 aa-1.23□□□□□ -2.61
VPS50-217ENST00000485140 DMXL1Q9Y485 3027 aa-1.24□□□□□ -2.61
VPS50-217ENST00000485140 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-1.24□□□□□ -2.61
VPS50-217ENST00000485140 PTPN23Q9H3S7 1636 aa-1.24□□□□□ -2.61
VPS50-217ENST00000485140 A0A087WVE0 104 aa-1.24□□□□□ -2.61
VPS50-217ENST00000485140 A0A0G2JND7 137 aa-1.24□□□□□ -2.61
VPS50-217ENST00000485140 S100A12P80511 92 aa-1.24□□□□□ -2.61
VPS50-217ENST00000485140 CDKN2A-AS1Q9UH64 79 aa-1.24□□□□□ -2.61
VPS50-217ENST00000485140 LAMA3Q16787 3333 aa-1.24□□□□□ -2.61
VPS50-217ENST00000485140 TEX15Q9BXT5 2789 aa-1.25□□□□□ -2.61
VPS50-217ENST00000485140 GNGT1P63211 74 aa-1.25□□□□□ -2.61
VPS50-217ENST00000485140 CGREF1Q99674 301 aa-1.25□□□□□ -2.61
VPS50-217ENST00000485140 FAM107BQ9H098 131 aa-1.25□□□□□ -2.61
VPS50-217ENST00000485140 IER3IP1Q9Y5U9 82 aa-1.25□□□□□ -2.61
VPS50-217ENST00000485140 DNAH11Q96DT5 4516 aa-1.25□□□□□ -2.61
VPS50-217ENST00000485140 MYOM2P54296 1465 aa-1.25□□□□□ -2.61
VPS50-217ENST00000485140 ADAMTS12P58397 1594 aa-1.25□□□□□ -2.61
VPS50-217ENST00000485140 ACACAQ13085 2346 aa-1.26□□□□□ -2.61
VPS50-217ENST00000485140 CUL7Q14999 1698 aa-1.26□□□□□ -2.61
VPS50-217ENST00000485140 C7orf77A4D0Y5 90 aa-1.26□□□□□ -2.61
VPS50-217ENST00000485140 H3BQ15 152 aa-1.26□□□□□ -2.61
VPS50-217ENST00000485140 COL4A6Q14031 1691 aa-1.26□□□□□ -2.61
VPS50-217ENST00000485140 KIAA1551Q9HCM1 1747 aa-1.26□□□□□ -2.61
VPS50-217ENST00000485140 SPTY2D1-AS1A0A0U1RR47 76 aa-1.27□□□□□ -2.61
VPS50-217ENST00000485140 TMEM262E9PQX1 116 aa-1.27□□□□□ -2.61
VPS50-217ENST00000485140 H0Y9P7 68 aa-1.27□□□□□ -2.61
VPS50-217ENST00000485140 ROCK2O75116 1388 aaKnown RBP-1.27□□□□□ -2.61
VPS50-217ENST00000485140 CLIP1P30622 1438 aa-1.27□□□□□ -2.61
VPS50-217ENST00000485140 APOBP04114 4563 aaKnown RBP-1.28□□□□□ -2.61
VPS50-217ENST00000485140 DNAH1Q9P2D7 4330 aa-1.28□□□□□ -2.61
VPS50-217ENST00000485140 ARMS2P0C7Q2 107 aa-1.28□□□□□ -2.61
VPS50-217ENST00000485140 HIGD1BQ9P298 99 aa-1.28□□□□□ -2.61
VPS50-217ENST00000485140 SRCAPQ6ZRS2 3230 aa-1.28□□□□□ -2.61
VPS50-217ENST00000485140 ANKRD36A6QL64 1941 aa-1.28□□□□□ -2.62
VPS50-217ENST00000485140 COL14A1Q05707 1796 aaKnown RBP-1.29□□□□□ -2.62
VPS50-217ENST00000485140 ARHGAP5Q13017 1502 aa-1.29□□□□□ -2.62
VPS50-217ENST00000485140 HMGN1P05114 100 aa-1.29□□□□□ -2.62
VPS50-217ENST00000485140 GNG4P50150 75 aa-1.29□□□□□ -2.62
VPS50-217ENST00000485140 DEFA5Q01523 94 aa-1.29□□□□□ -2.62
VPS50-217ENST00000485140 WFDC13Q8IUB5 93 aa-1.29□□□□□ -2.62
VPS50-217ENST00000485140 DEFB107AQ8IZN7 70 aa-1.29□□□□□ -2.62
VPS50-217ENST00000485140 A0A0C4DFX4 3053 aa-1.29□□□□□ -2.62
VPS50-217ENST00000485140 NBEAQ8NFP9 2946 aa-1.29□□□□□ -2.62
VPS50-217ENST00000485140 MAPKBP1O60336 1514 aa-1.3□□□□□ -2.62
VPS50-217ENST00000485140 SACSQ9NZJ4 4579 aa-1.31□□□□□ -2.62
VPS50-217ENST00000485140 NALCNQ8IZF0 1738 aa-1.31□□□□□ -2.62
VPS50-217ENST00000485140 TRBV7-7A0A0K0K1E9 115 aa-1.31□□□□□ -2.62
VPS50-217ENST00000485140 PPP3R1P63098 170 aa-1.31□□□□□ -2.62
VPS50-217ENST00000485140 HSD52Q0P140 79 aa-1.31□□□□□ -2.62
VPS50-217ENST00000485140 PSENENQ9NZ42 101 aa-1.31□□□□□ -2.62
VPS50-217ENST00000485140 NRKQ7Z2Y5 1582 aa-1.31□□□□□ -2.62
VPS50-217ENST00000485140 RELNP78509 3460 aa-1.31□□□□□ -2.62
VPS50-217ENST00000485140 NCOA3Q9Y6Q9 1424 aa-1.32□□□□□ -2.62
VPS50-217ENST00000485140 KNDC1Q76NI1 1749 aa-1.32□□□□□ -2.62
VPS50-217ENST00000485140 PDE4DIPQ5VU43 2346 aa-1.32□□□□□ -2.62
VPS50-217ENST00000485140 LRRK2Q5S007 2527 aa-1.32□□□□□ -2.62
VPS50-217ENST00000485140 TARBP1Q13395 1621 aaKnown RBP-1.32□□□□□ -2.62
VPS50-217ENST00000485140 H3BNG1 76 aa-1.32□□□□□ -2.62
VPS50-217ENST00000485140 PSMG4Q5JS54 123 aa-1.32□□□□□ -2.62
VPS50-217ENST00000485140 TROQ12816 1431 aaPredicted RBP-1.32□□□□□ -2.62
VPS50-217ENST00000485140 PKD1L2Q7Z442 2459 aa-1.33□□□□□ -2.62
VPS50-217ENST00000485140 MT1HP80294 61 aa-1.33□□□□□ -2.62
VPS50-217ENST00000485140 PMCHL1Q16048 86 aa-1.33□□□□□ -2.62
VPS50-217ENST00000485140 RPL13AP3Q6NVV1 102 aa-1.33□□□□□ -2.62
VPS50-217ENST00000485140 SHPRHQ149N8 1683 aa-1.33□□□□□ -2.62
VPS50-217ENST00000485140 CICQ96RK0 1608 aaPredicted RBP-1.33□□□□□ -2.62
VPS50-217ENST00000485140 MYO15AQ9UKN7 3530 aa-1.33□□□□□ -2.62
VPS50-217ENST00000485140 CMYA5Q8N3K9 4069 aa-1.34□□□□□ -2.62
VPS50-217ENST00000485140 NDUFC1O43677 76 aa-1.34□□□□□ -2.62
VPS50-217ENST00000485140 LELP1Q5T871 98 aa-1.34□□□□□ -2.62
VPS50-217ENST00000485140 CEP295Q9C0D2 2601 aa-1.34□□□□□ -2.62
VPS50-217ENST00000485140 BCORQ6W2J9 1755 aa-1.34□□□□□ -2.62
VPS50-217ENST00000485140 TRBV25-1A0A075B6N4 114 aa-1.35□□□□□ -2.63
VPS50-217ENST00000485140 CACFD1Q9UGQ2 172 aa-1.35□□□□□ -2.63
VPS50-217ENST00000485140 AP4S1Q9Y587 144 aa-1.35□□□□□ -2.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms