RNA–Protein interactions for RNA: ENST00000484799.1

SMC4-215, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 478 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-215ENST00000484799 Q9H521 79 aa0.13□□□□□ -2.39
SMC4-215ENST00000484799 CRIPTQ9P021 101 aa0.13□□□□□ -2.39
SMC4-215ENST00000484799 MYO3AQ8NEV4 1616 aa0.13□□□□□ -2.39
SMC4-215ENST00000484799 CEP162Q5TB80 1403 aa0.13□□□□□ -2.39
SMC4-215ENST00000484799 SETXQ7Z333 2677 aaKnown RBP0.12□□□□□ -2.39
SMC4-215ENST00000484799 PSENENQ9NZ42 101 aa0.12□□□□□ -2.39
SMC4-215ENST00000484799 V9GYS6 101 aa0.12□□□□□ -2.39
SMC4-215ENST00000484799 FMN2Q9NZ56 1722 aa0.12□□□□□ -2.39
SMC4-215ENST00000484799 MYCBP2O75592 4640 aa0.11□□□□□ -2.39
SMC4-215ENST00000484799 MAP1BP46821 2468 aaKnown RBP0.11□□□□□ -2.39
SMC4-215ENST00000484799 RGPD4Q7Z3J3 1758 aa0.11□□□□□ -2.39
SMC4-215ENST00000484799 KIF20BQ96Q89 1820 aa0.1□□□□□ -2.39
SMC4-215ENST00000484799 NKTRP30414 1462 aaKnown RBP0.1□□□□□ -2.39
SMC4-215ENST00000484799 FAT2Q9NYQ8 4349 aa0.1□□□□□ -2.39
SMC4-215ENST00000484799 SSPOA2VEC9 5147 aa0.1□□□□□ -2.39
SMC4-215ENST00000484799 ABCC3O15438 1527 aa0.1□□□□□ -2.39
SMC4-215ENST00000484799 SLIT1O75093 1534 aa0.1□□□□□ -2.39
SMC4-215ENST00000484799 I3L3M4 83 aa0.1□□□□□ -2.39
SMC4-215ENST00000484799 PEA15Q15121 130 aa0.1□□□□□ -2.39
SMC4-215ENST00000484799 DEFB105AQ8NG35 78 aa0.1□□□□□ -2.39
SMC4-215ENST00000484799 FXYD6Q9H0Q3 95 aa0.1□□□□□ -2.39
SMC4-215ENST00000484799 HIGD1BQ9P298 99 aa0.1□□□□□ -2.39
SMC4-215ENST00000484799 PKD1L3Q7Z443 1732 aa0.1□□□□□ -2.39
SMC4-215ENST00000484799 EP300Q09472 2414 aaPredicted RBP0.09□□□□□ -2.39
SMC4-215ENST00000484799 TNXBP22105 4242 aa0.09□□□□□ -2.39
SMC4-215ENST00000484799 HMGN2P05204 90 aaKnown RBP0.09□□□□□ -2.4
SMC4-215ENST00000484799 PYY3Q5JQD4 70 aa0.09□□□□□ -2.4
SMC4-215ENST00000484799 UBE2D4Q9Y2X8 147 aa0.09□□□□□ -2.4
SMC4-215ENST00000484799 ALKQ9UM73 1620 aa0.09□□□□□ -2.4
SMC4-215ENST00000484799 COL14A1Q05707 1796 aaKnown RBP0.09□□□□□ -2.4
SMC4-215ENST00000484799 CPSF4LA6NMK7 179 aaKnown RBP0.08□□□□□ -2.4
SMC4-215ENST00000484799 C20orf78Q9BR46 151 aa0.08□□□□□ -2.4
SMC4-215ENST00000484799 BSNQ9UPA5 3926 aa0.08□□□□□ -2.4
SMC4-215ENST00000484799 LPAP08519 4548 aa0.07□□□□□ -2.4
SMC4-215ENST00000484799 RGPD3A6NKT7 1758 aaPredicted RBP0.07□□□□□ -2.4
SMC4-215ENST00000484799 PVALEFA0A1B0GWK0 134 aa0.07□□□□□ -2.4
SMC4-215ENST00000484799 SPRR2DP22532 72 aa0.07□□□□□ -2.4
SMC4-215ENST00000484799 WNK1Q9H4A3 2382 aa0.07□□□□□ -2.4
SMC4-215ENST00000484799 HMCN2Q8NDA2 5059 aa0.07□□□□□ -2.4
SMC4-215ENST00000484799 PRKDCP78527 4128 aaKnown RBP0.06□□□□□ -2.4
SMC4-215ENST00000484799 SPTY2D1-AS1A0A0U1RR47 76 aa0.06□□□□□ -2.4
SMC4-215ENST00000484799 IGLC2P0DOY2 106 aa0.06□□□□□ -2.4
SMC4-215ENST00000484799 IGLC3P0DOY3 106 aa0.06□□□□□ -2.4
SMC4-215ENST00000484799 PLIN4Q96Q06 1357 aa0.06□□□□□ -2.4
SMC4-215ENST00000484799 UBR1Q8IWV7 1749 aa0.05□□□□□ -2.4
SMC4-215ENST00000484799 LOC730098B7Z3J9 87 aa0.05□□□□□ -2.4
SMC4-215ENST00000484799 CCL22O00626 93 aa0.05□□□□□ -2.4
SMC4-215ENST00000484799 NMSQ5H8A3 153 aa0.05□□□□□ -2.4
SMC4-215ENST00000484799 CLIP1P30622 1438 aa0.04□□□□□ -2.4
SMC4-215ENST00000484799 PRM1P04553 51 aa0.04□□□□□ -2.4
SMC4-215ENST00000484799 PLGLAQ15195 96 aa0.04□□□□□ -2.4
SMC4-215ENST00000484799 APLNQ9ULZ1 77 aa0.04□□□□□ -2.4
SMC4-215ENST00000484799 QSER1Q2KHR3 1735 aa0.04□□□□□ -2.4
SMC4-215ENST00000484799 APC2O95996 2303 aa0.03□□□□□ -2.4
SMC4-215ENST00000484799 TENM2Q9NT68 2774 aa0.03□□□□□ -2.4
SMC4-215ENST00000484799 K7EP34 96 aa0.03□□□□□ -2.4
SMC4-215ENST00000484799 KLK9Q2XQG4 91 aa0.03□□□□□ -2.4
SMC4-215ENST00000484799 DEFB112Q30KQ8 113 aa0.03□□□□□ -2.4
SMC4-215ENST00000484799 RABAC1Q9UI14 185 aa0.03□□□□□ -2.4
SMC4-215ENST00000484799 ATP7BP35670 1465 aa0.03□□□□□ -2.41
SMC4-215ENST00000484799 ZANQ9Y493 2812 aa0.02□□□□□ -2.41
SMC4-215ENST00000484799 A0A1B0GUT8 65 aa0.02□□□□□ -2.41
SMC4-215ENST00000484799 CYB5AP00167 134 aa0.02□□□□□ -2.41
SMC4-215ENST00000484799 MRPL34Q9BQ48 92 aaKnown RBP0.02□□□□□ -2.41
SMC4-215ENST00000484799 PPLO60437 1756 aa0.01□□□□□ -2.41
SMC4-215ENST00000484799 BCORQ6W2J9 1755 aa0.01□□□□□ -2.41
SMC4-215ENST00000484799 UBR3Q6ZT12 1888 aa0.01□□□□□ -2.41
SMC4-215ENST00000484799 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.01□□□□□ -2.411e-5■■■■□ 21.5
SMC4-215ENST00000484799 SNRPFP62306 86 aaKnown RBP0.01□□□□□ -2.41
SMC4-215ENST00000484799 S100A16Q96FQ6 103 aaKnown RBP0.01□□□□□ -2.41
SMC4-215ENST00000484799 FLNBO75369 2602 aaKnown RBP0.01□□□□□ -2.41
SMC4-215ENST00000484799 HSPG2P98160 4391 aa0.01□□□□□ -2.41
SMC4-215ENST00000484799 MAGI2Q86UL8 1455 aa0.01□□□□□ -2.41
SMC4-215ENST00000484799 NEXMIFQ5QGS0 1516 aa0.01□□□□□ -2.41
SMC4-215ENST00000484799 ALMS1Q8TCU4 4167 aa0.01□□□□□ -2.41
SMC4-215ENST00000484799 SMARCA2P51531 1590 aa0□□□□□ -2.41
SMC4-215ENST00000484799 LRRC9Q6ZRR7 1453 aa0□□□□□ -2.41
SMC4-215ENST00000484799 MAP3K4Q9Y6R4 1608 aa0□□□□□ -2.41
SMC4-215ENST00000484799 RB1CC1Q8TDY2 1594 aa-0.01□□□□□ -2.41
SMC4-215ENST00000484799 GNG2P59768 71 aa-0.01□□□□□ -2.41
SMC4-215ENST00000484799 RPL38P63173 70 aaKnown RBP-0.01□□□□□ -2.41
SMC4-215ENST00000484799 H1FX-AS1Q4G0G2 97 aa-0.01□□□□□ -2.41
SMC4-215ENST00000484799 REV3LO60673 3130 aa-0.01□□□□□ -2.41
SMC4-215ENST00000484799 RGPD2P0DJD1 1756 aa-0.01□□□□□ -2.41
SMC4-215ENST00000484799 ACANP16112 2415 aa-0.02□□□□□ -2.41
SMC4-215ENST00000484799 HECTD4Q9Y4D8 3996 aa-0.02□□□□□ -2.41
SMC4-215ENST00000484799 MYMXA0A1B0GTQ4 84 aa-0.02□□□□□ -2.41
SMC4-215ENST00000484799 IQCF6A8MYZ5 107 aa-0.02□□□□□ -2.41
SMC4-215ENST00000484799 COX7BP24311 80 aa-0.02□□□□□ -2.41
SMC4-215ENST00000484799 LINC00643Q86TS7 51 aa-0.02□□□□□ -2.41
SMC4-215ENST00000484799 MAP1AP78559 2803 aaPredicted RBP-0.02□□□□□ -2.41
SMC4-215ENST00000484799 KIF14Q15058 1648 aa-0.02□□□□□ -2.41
SMC4-215ENST00000484799 LRRC7Q96NW7 1537 aa-0.03□□□□□ -2.41
SMC4-215ENST00000484799 TRANK1O15050 2925 aa-0.03□□□□□ -2.41
SMC4-215ENST00000484799 M0R2T5 61 aa-0.03□□□□□ -2.41
SMC4-215ENST00000484799 ACYP1P07311 99 aa-0.03□□□□□ -2.41
SMC4-215ENST00000484799 PREX1Q8TCU6 1659 aa-0.03□□□□□ -2.41
SMC4-215ENST00000484799 CNOT1A5YKK6 2376 aaKnown RBP-0.03□□□□□ -2.41
SMC4-215ENST00000484799 UACAQ9BZF9 1416 aa-0.04□□□□□ -2.42
SMC4-215ENST00000484799 RGPD8O14715 1765 aaPredicted RBP-0.04□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms