RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 DNAH8Q96JB1 4490 aa5.33□□□□□ -1.56
USP4-210ENST00000483212 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.32□□□□□ -1.56
USP4-210ENST00000483212 PCP4L1A6NKN8 68 aa5.32□□□□□ -1.56
USP4-210ENST00000483212 LINC00587B1AMM8 73 aa5.32□□□□□ -1.56
USP4-210ENST00000483212 PFN2P35080 140 aa5.32□□□□□ -1.56
USP4-210ENST00000483212 Q6ZVH6 145 aa5.32□□□□□ -1.56
USP4-210ENST00000483212 MIR7-3HGQ8N6C7 128 aa5.32□□□□□ -1.56
USP4-210ENST00000483212 LINC00308Q8TCZ7 52 aa5.32□□□□□ -1.56
USP4-210ENST00000483212 DYNC1H1Q14204 4646 aaKnown RBP5.32□□□□□ -1.56
USP4-210ENST00000483212 LOC107984156A0A0G2JMH3 177 aa5.31□□□□□ -1.56
USP4-210ENST00000483212 NDUFC2-KCTD14E9PQ53 114 aa5.31□□□□□ -1.56
USP4-210ENST00000483212 LINC00158P58513 81 aa5.31□□□□□ -1.56
USP4-210ENST00000483212 CIRBPQ14011 172 aaKnown RBP5.31□□□□□ -1.56
USP4-210ENST00000483212 Q6ZRP5 223 aa5.31□□□□□ -1.56
USP4-210ENST00000483212 MUSTN1Q8IVN3 82 aa5.31□□□□□ -1.56
USP4-210ENST00000483212 ARL17AQ8IVW1 177 aa5.31□□□□□ -1.56
USP4-210ENST00000483212 C9orf163Q8N9P6 203 aa5.31□□□□□ -1.56
USP4-210ENST00000483212 HIST1H4GQ99525 98 aa5.31□□□□□ -1.56
USP4-210ENST00000483212 IFITM1P13164 125 aa5.3□□□□□ -1.56
USP4-210ENST00000483212 FXYD2P54710 66 aa5.3□□□□□ -1.56
USP4-210ENST00000483212 BVES-AS1Q5T3Y7 98 aa5.3□□□□□ -1.56
USP4-210ENST00000483212 CEND1Q8N111 149 aa5.3□□□□□ -1.56
USP4-210ENST00000483212 Q8NDZ9 215 aa5.3□□□□□ -1.56
USP4-210ENST00000483212 SND1-IT1Q9HBX3 110 aa5.3□□□□□ -1.56
USP4-210ENST00000483212 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.29□□□□□ -1.56
USP4-210ENST00000483212 A6NJY4 79 aa5.29□□□□□ -1.56
USP4-210ENST00000483212 FAM229AH3BQW9 127 aa5.29□□□□□ -1.56
USP4-210ENST00000483212 GCSHP23434 173 aa5.29□□□□□ -1.56
USP4-210ENST00000483212 FUSP35637 526 aaKnown RBP eCLIP5.29□□□□□ -1.56
USP4-210ENST00000483212 KRTAP10-2P60368 255 aa5.29□□□□□ -1.56
USP4-210ENST00000483212 NPC2P61916 151 aa5.29□□□□□ -1.56
USP4-210ENST00000483212 SRSF9Q13242 221 aaKnown RBP eCLIP5.29□□□□□ -1.56
USP4-210ENST00000483212 SDIM1Q6ZPB5 146 aa5.29□□□□□ -1.56
USP4-210ENST00000483212 LOC107984640A0A0U1RRK4 108 aa5.28□□□□□ -1.56
USP4-210ENST00000483212 EREGO14944 169 aa5.28□□□□□ -1.56
USP4-210ENST00000483212 HINT1P49773 126 aaPredicted RBP5.28□□□□□ -1.56
USP4-210ENST00000483212 C9orf129Q5T035 196 aaKnown RBP5.28□□□□□ -1.56
USP4-210ENST00000483212 LINC00336Q6ZUF6 198 aa5.28□□□□□ -1.56
USP4-210ENST00000483212 SNHG12Q9BXW3 62 aa5.28□□□□□ -1.56
USP4-210ENST00000483212 LRP1BQ9NZR2 4599 aa5.28□□□□□ -1.56
USP4-210ENST00000483212 A0A096LNI7 61 aa5.27□□□□□ -1.57
USP4-210ENST00000483212 A0A1B0GVY2 172 aa5.27□□□□□ -1.57
USP4-210ENST00000483212 A0A1B0GWB2 263 aa5.27□□□□□ -1.57
USP4-210ENST00000483212 A4D1N5 150 aa5.27□□□□□ -1.57
USP4-210ENST00000483212 M0R143 59 aa5.27□□□□□ -1.57
USP4-210ENST00000483212 LINC01620Q4KN68 170 aa5.27□□□□□ -1.57
USP4-210ENST00000483212 KRTAP7-1Q8IUC3 87 aa5.27□□□□□ -1.57
USP4-210ENST00000483212 XAGE1AQ9HD64 81 aa5.27□□□□□ -1.57
USP4-210ENST00000483212 IGKV2-28A0A075B6P5 120 aa5.26□□□□□ -1.57
USP4-210ENST00000483212 IGLV5-52A0A0A0MRZ9 124 aa5.26□□□□□ -1.57
USP4-210ENST00000483212 C16orf90A8MZG2 172 aa5.26□□□□□ -1.57
USP4-210ENST00000483212 NDUFC2O95298 119 aa5.26□□□□□ -1.57
USP4-210ENST00000483212 IGKV2D-28P01615 120 aa5.26□□□□□ -1.57
USP4-210ENST00000483212 RPL24P83731 157 aaKnown RBP5.26□□□□□ -1.57
USP4-210ENST00000483212 RPL18AQ02543 176 aaKnown RBP5.26□□□□□ -1.57
USP4-210ENST00000483212 GAGE2EQ4V326 116 aa5.26□□□□□ -1.57
USP4-210ENST00000483212 GAGE2DQ9UEU5 116 aa5.26□□□□□ -1.57
USP4-210ENST00000483212 PKHD1P08F94 4074 aa5.26□□□□□ -1.57
USP4-210ENST00000483212 PANO1I0J062 215 aa5.25□□□□□ -1.57
USP4-210ENST00000483212 CHTF8P0CG12 524 aa5.25□□□□□ -1.57
USP4-210ENST00000483212 CFC1BP0CG36 223 aa5.25□□□□□ -1.57
USP4-210ENST00000483212 CFC1P0CG37 223 aa5.25□□□□□ -1.57
USP4-210ENST00000483212 VPREB1P12018 145 aa5.25□□□□□ -1.57
USP4-210ENST00000483212 GAGE2BQ13066 116 aa5.25□□□□□ -1.57
USP4-210ENST00000483212 COPS9Q8WXC6 57 aa5.25□□□□□ -1.57
USP4-210ENST00000483212 PLA2G2DQ9UNK4 145 aa5.25□□□□□ -1.57
USP4-210ENST00000483212 IGLV5-37A0A075B6J1 123 aa5.24□□□□□ -1.57
USP4-210ENST00000483212 A0A0B4J2C4 111 aa5.24□□□□□ -1.57
USP4-210ENST00000483212 FAM168BA1KXE4 195 aa5.24□□□□□ -1.57
USP4-210ENST00000483212 EPM2AB3EWF7 344 aa5.24□□□□□ -1.57
USP4-210ENST00000483212 K7ERJ3 54 aa5.24□□□□□ -1.57
USP4-210ENST00000483212 PRR3P79522 188 aaKnown RBP5.24□□□□□ -1.57
USP4-210ENST00000483212 SERTAD4-AS1Q5TG53 156 aa5.24□□□□□ -1.57
USP4-210ENST00000483212 EPPK1P58107 5090 aaKnown RBP5.24□□□□□ -1.57
USP4-210ENST00000483212 APOBP04114 4563 aaKnown RBP5.23□□□□□ -1.57
USP4-210ENST00000483212 TMEM238LA0A1B0GVL6 79 aa5.23□□□□□ -1.57
USP4-210ENST00000483212 BATFQ16520 125 aa5.23□□□□□ -1.57
USP4-210ENST00000483212 LINC00337Q8N6G1 96 aa5.23□□□□□ -1.57
USP4-210ENST00000483212 SPACA4Q8TDM5 124 aa5.23□□□□□ -1.57
USP4-210ENST00000483212 NHP2Q9NX24 153 aaKnown RBP5.23□□□□□ -1.57
USP4-210ENST00000483212 PKIGQ9Y2B9 76 aa5.23□□□□□ -1.57
USP4-210ENST00000483212 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.23□□□□□ -1.57
USP4-210ENST00000483212 IGKV2-24A0A0C4DH68 120 aa5.22□□□□□ -1.57
USP4-210ENST00000483212 TRBV10-2A0A0K0K1G8 114 aa5.22□□□□□ -1.57
USP4-210ENST00000483212 A0A1W2PNN7 141 aa5.22□□□□□ -1.57
USP4-210ENST00000483212 KRTAP10-1P60331 282 aa5.22□□□□□ -1.57
USP4-210ENST00000483212 A6NDN8 102 aa5.21□□□□□ -1.58
USP4-210ENST00000483212 NCR3O14931 201 aa5.21□□□□□ -1.58
USP4-210ENST00000483212 Q6ZSA8 131 aa5.21□□□□□ -1.58
USP4-210ENST00000483212 TAX1BP3O14907 124 aa5.2□□□□□ -1.58
USP4-210ENST00000483212 IGLV6-57P01721 117 aa5.2□□□□□ -1.58
USP4-210ENST00000483212 FAM19A5Q7Z5A7 132 aaPredicted RBP5.2□□□□□ -1.58
USP4-210ENST00000483212 C7orf33Q8WU49 177 aa5.2□□□□□ -1.58
USP4-210ENST00000483212 FAM30AQ9NZY2 134 aa5.2□□□□□ -1.58
USP4-210ENST00000483212 LINC00474Q9P2X8 69 aa5.2□□□□□ -1.58
USP4-210ENST00000483212 PRO1854Q9UHT4 67 aa5.2□□□□□ -1.58
USP4-210ENST00000483212 RYR1P21817 5038 aa5.19□□□□□ -1.58
USP4-210ENST00000483212 TRAV13-2A0A0B4J235 113 aa5.19□□□□□ -1.58
USP4-210ENST00000483212 M0R378 163 aa5.19□□□□□ -1.58
USP4-210ENST00000483212 TSPAN13O95857 204 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms