RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 HBDP02042 147 aa2.47□□□□□ -2.01
VPS13D-208ENST00000481484 ADCYAP1P18509 176 aa2.47□□□□□ -2.01
VPS13D-208ENST00000481484 UBE2AP49459 152 aa2.47□□□□□ -2.01
VPS13D-208ENST00000481484 RPL24P83731 157 aaKnown RBP2.47□□□□□ -2.01
VPS13D-208ENST00000481484 XAGE1AQ9HD64 81 aa2.47□□□□□ -2.01
VPS13D-208ENST00000481484 LPAP08519 4548 aa2.47□□□□□ -2.01
VPS13D-208ENST00000481484 TMEM218A2RU14 115 aa2.46□□□□□ -2.02
VPS13D-208ENST00000481484 RAB5BP61020 215 aa2.46□□□□□ -2.02
VPS13D-208ENST00000481484 PRR4Q16378 134 aa2.46□□□□□ -2.02
VPS13D-208ENST00000481484 NDUFA5Q16718 116 aa2.46□□□□□ -2.02
VPS13D-208ENST00000481484 KRTAP13-1Q8IUC0 172 aa2.46□□□□□ -2.02
VPS13D-208ENST00000481484 KRTAP11-1Q8IUC1 163 aa2.46□□□□□ -2.02
VPS13D-208ENST00000481484 TYMSOSQ8TAI1 123 aa2.46□□□□□ -2.02
VPS13D-208ENST00000481484 CST9LQ9H4G1 147 aa2.46□□□□□ -2.02
VPS13D-208ENST00000481484 ZNF706Q9Y5V0 76 aaPredicted RBP2.46□□□□□ -2.02
VPS13D-208ENST00000481484 LINC00587B1AMM8 73 aa2.45□□□□□ -2.02
VPS13D-208ENST00000481484 SPINK8P0C7L1 97 aa2.45□□□□□ -2.02
VPS13D-208ENST00000481484 ZNF22P17026 224 aaPredicted RBP2.45□□□□□ -2.02
VPS13D-208ENST00000481484 S100A12P80511 92 aa2.45□□□□□ -2.02
VPS13D-208ENST00000481484 FABP9Q0Z7S8 132 aa2.45□□□□□ -2.02
VPS13D-208ENST00000481484 KIAA1644Q3SXP7 199 aa2.45□□□□□ -2.02
VPS13D-208ENST00000481484 ZC2HC1BQ5TFG8 222 aa2.45□□□□□ -2.02
VPS13D-208ENST00000481484 LINC00304Q8N9R0 145 aa2.45□□□□□ -2.02
VPS13D-208ENST00000481484 LINC00167Q96N53 147 aa2.45□□□□□ -2.02
VPS13D-208ENST00000481484 ERG28Q9UKR5 140 aa2.45□□□□□ -2.02
VPS13D-208ENST00000481484 A0A087X002 238 aa2.44□□□□□ -2.02
VPS13D-208ENST00000481484 IGKV2D-26A0A0A0MRZ7 120 aa2.44□□□□□ -2.02
VPS13D-208ENST00000481484 PRYO14603 147 aa2.44□□□□□ -2.02
VPS13D-208ENST00000481484 VPREB1P12018 145 aa2.44□□□□□ -2.02
VPS13D-208ENST00000481484 TPRXLQ17RH7 258 aa2.44□□□□□ -2.02
VPS13D-208ENST00000481484 C10orf91Q5T1B1 145 aa2.44□□□□□ -2.02
VPS13D-208ENST00000481484 SPAG11AQ6PDA7 123 aa2.44□□□□□ -2.02
VPS13D-208ENST00000481484 FP248Q71RG6 208 aaPredicted RBP2.44□□□□□ -2.02
VPS13D-208ENST00000481484 COMMD7Q86VX2 200 aa2.44□□□□□ -2.02
VPS13D-208ENST00000481484 FAM19A2Q8N3H0 131 aa2.44□□□□□ -2.02
VPS13D-208ENST00000481484 C18orf32Q8TCD1 76 aa2.44□□□□□ -2.02
VPS13D-208ENST00000481484 TMEM126AQ9H061 195 aa2.44□□□□□ -2.02
VPS13D-208ENST00000481484 SND1-IT1Q9HBX3 110 aa2.44□□□□□ -2.02
VPS13D-208ENST00000481484 IGKV2-28A0A075B6P5 120 aa2.43□□□□□ -2.02
VPS13D-208ENST00000481484 A0A096LNJ9 63 aa2.43□□□□□ -2.02
VPS13D-208ENST00000481484 TRAV12-1A0A0B4J245 112 aa2.43□□□□□ -2.02
VPS13D-208ENST00000481484 GAGE10A6NGK3 116 aa2.43□□□□□ -2.02
VPS13D-208ENST00000481484 RPL37AP8A6NKH3 93 aa2.43□□□□□ -2.02
VPS13D-208ENST00000481484 SNAPINO95295 136 aa2.43□□□□□ -2.02
VPS13D-208ENST00000481484 IGKV2D-28P01615 120 aa2.43□□□□□ -2.02
VPS13D-208ENST00000481484 LINC00614P0C842 121 aa2.43□□□□□ -2.02
VPS13D-208ENST00000481484 HERV-K104P63124 156 aa2.43□□□□□ -2.02
VPS13D-208ENST00000481484 TMEM170BQ5T4T1 132 aa2.43□□□□□ -2.02
VPS13D-208ENST00000481484 FAM19A1Q7Z5A9 133 aa2.43□□□□□ -2.02
VPS13D-208ENST00000481484 SVBPQ8N300 66 aa2.43□□□□□ -2.02
VPS13D-208ENST00000481484 CHCHD1Q96BP2 118 aaKnown RBP2.43□□□□□ -2.02
VPS13D-208ENST00000481484 ZNF625Q96I27 306 aaPredicted RBP2.43□□□□□ -2.02
VPS13D-208ENST00000481484 MAP1LC3CQ9BXW4 147 aa2.43□□□□□ -2.02
VPS13D-208ENST00000481484 TRAPPC1Q9Y5R8 145 aa2.43□□□□□ -2.02
VPS13D-208ENST00000481484 MUC2Q02817 5179 aa2.43□□□□□ -2.02
VPS13D-208ENST00000481484 FAT4Q6V0I7 4981 aa2.43□□□□□ -2.02
VPS13D-208ENST00000481484 C11orf86A6NJI1 115 aa2.42□□□□□ -2.02
VPS13D-208ENST00000481484 M0R378 163 aa2.42□□□□□ -2.02
VPS13D-208ENST00000481484 ATP6V1G1O75348 118 aa2.42□□□□□ -2.02
VPS13D-208ENST00000481484 PLNP26678 52 aa2.42□□□□□ -2.02
VPS13D-208ENST00000481484 PFN2P35080 140 aa2.42□□□□□ -2.02
VPS13D-208ENST00000481484 NDUFA6P56556 154 aa2.42□□□□□ -2.02
VPS13D-208ENST00000481484 RPS29P62273 56 aaKnown RBP2.42□□□□□ -2.02
VPS13D-208ENST00000481484 IFITM2Q01629 132 aa2.42□□□□□ -2.02
VPS13D-208ENST00000481484 BAGE3Q86Y29 109 aa2.42□□□□□ -2.02
VPS13D-208ENST00000481484 CBLN2Q8IUK8 224 aa2.42□□□□□ -2.02
VPS13D-208ENST00000481484 LINC00337Q8N6G1 96 aa2.42□□□□□ -2.02
VPS13D-208ENST00000481484 RPS10P5Q9NQ39 176 aa2.42□□□□□ -2.02
VPS13D-208ENST00000481484 NDUFA12Q9UI09 145 aa2.42□□□□□ -2.02
VPS13D-208ENST00000481484 CBY1Q9Y3M2 126 aa2.42□□□□□ -2.02
VPS13D-208ENST00000481484 MYMXA0A1B0GTQ4 84 aa2.41□□□□□ -2.02
VPS13D-208ENST00000481484 ETDCA0A1B0GVM5 59 aa2.41□□□□□ -2.02
VPS13D-208ENST00000481484 TMEM223A0PJW6 202 aa2.41□□□□□ -2.02
VPS13D-208ENST00000481484 NMUP48645 174 aa2.41□□□□□ -2.02
VPS13D-208ENST00000481484 HERVK_113P61574 105 aa2.41□□□□□ -2.02
VPS13D-208ENST00000481484 PRLHP81277 87 aa2.41□□□□□ -2.02
VPS13D-208ENST00000481484 KRTAP13-2Q52LG2 175 aa2.41□□□□□ -2.02
VPS13D-208ENST00000481484 IFI27L1Q96BM0 104 aa2.41□□□□□ -2.02
VPS13D-208ENST00000481484 HIGD2AQ9BW72 106 aa2.41□□□□□ -2.02
VPS13D-208ENST00000481484 CHTOPQ9Y3Y2 248 aaKnown RBP2.41□□□□□ -2.02
VPS13D-208ENST00000481484 IGLV7-46A0A075B6I9 117 aa2.4□□□□□ -2.03
VPS13D-208ENST00000481484 TRBV10-2A0A0K0K1G8 114 aa2.4□□□□□ -2.03
VPS13D-208ENST00000481484 TMEM238C9JI98 176 aa2.4□□□□□ -2.03
VPS13D-208ENST00000481484 HSBP1O75506 76 aa2.4□□□□□ -2.03
VPS13D-208ENST00000481484 TSPAN13O95857 204 aa2.4□□□□□ -2.03
VPS13D-208ENST00000481484 SPRR1AP35321 89 aa2.4□□□□□ -2.03
VPS13D-208ENST00000481484 LINC00158P58513 81 aa2.4□□□□□ -2.03
VPS13D-208ENST00000481484 MEIG1Q5JSS6 88 aa2.4□□□□□ -2.03
VPS13D-208ENST00000481484 PLEKHB2Q96CS7 222 aa2.4□□□□□ -2.03
VPS13D-208ENST00000481484 SPRR4Q96PI1 79 aa2.4□□□□□ -2.03
VPS13D-208ENST00000481484 MIEN1Q9BRT3 115 aa2.4□□□□□ -2.03
VPS13D-208ENST00000481484 KCNQ1DNQ9H478 68 aa2.4□□□□□ -2.03
VPS13D-208ENST00000481484 SPANXB1Q9NS25 103 aaPredicted RBP2.4□□□□□ -2.03
VPS13D-208ENST00000481484 MUC17Q685J3 4493 aa2.4□□□□□ -2.03
VPS13D-208ENST00000481484 LOC107984156A0A0G2JMH3 177 aa2.39□□□□□ -2.03
VPS13D-208ENST00000481484 C5orf52A6NGY3 159 aa2.39□□□□□ -2.03
VPS13D-208ENST00000481484 SPINK1P00995 79 aa2.39□□□□□ -2.03
VPS13D-208ENST00000481484 APOC3P02656 99 aa2.39□□□□□ -2.03
VPS13D-208ENST00000481484 JOSD1Q15040 202 aaPredicted RBP2.39□□□□□ -2.03
VPS13D-208ENST00000481484 LINC00483Q53H64 154 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms