RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 CMC2Q9NRP2 79 aa0.78□□□□□ -2.28
VPS50-213ENST00000477572 PLAC8Q9NZF1 115 aa0.78□□□□□ -2.28
VPS50-213ENST00000477572 LINC01558Q9Y6Z2 57 aa0.78□□□□□ -2.28
VPS50-213ENST00000477572 F5P12259 2224 aa0.78□□□□□ -2.28
VPS50-213ENST00000477572 DDX60Q8IY21 1712 aaKnown RBP0.78□□□□□ -2.29
VPS50-213ENST00000477572 TOGARAM1Q9Y4F4 1720 aa0.78□□□□□ -2.29
VPS50-213ENST00000477572 GOLGA4Q13439 2230 aaKnown RBP0.77□□□□□ -2.29
VPS50-213ENST00000477572 A0A087WTM6 91 aa0.77□□□□□ -2.29
VPS50-213ENST00000477572 IGKV2-40A0A087WW87 121 aaPredicted RBP0.77□□□□□ -2.29
VPS50-213ENST00000477572 NBDYA0A0U1RRE5 68 aa0.77□□□□□ -2.29
VPS50-213ENST00000477572 IGKV2D-40P01614 121 aaPredicted RBP0.77□□□□□ -2.29
VPS50-213ENST00000477572 PDE6GP18545 87 aa0.77□□□□□ -2.29
VPS50-213ENST00000477572 FCER1GP30273 86 aa0.77□□□□□ -2.29
VPS50-213ENST00000477572 Q86TA4 180 aa0.77□□□□□ -2.29
VPS50-213ENST00000477572 AMELXQ99217 191 aa0.77□□□□□ -2.29
VPS50-213ENST00000477572 KLK9Q9UKQ9 250 aa0.77□□□□□ -2.29
VPS50-213ENST00000477572 ABCC8Q09428 1581 aa0.77□□□□□ -2.29
VPS50-213ENST00000477572 CLTCL1P53675 1640 aa0.77□□□□□ -2.29
VPS50-213ENST00000477572 ANKRD17O75179 2603 aaKnown RBP0.77□□□□□ -2.29
VPS50-213ENST00000477572 TNCP24821 2201 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 PLXNB2O15031 1838 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 C4AP0C0L4 1744 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 C4BP0C0L5 1744 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 E9PCH4 1651 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 TRAV21A0A0B4J279 112 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 TRBV30A0A0K0K1B3 111 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 CTXND1A0A1B0GTU2 59 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 A0A1B0GUT8 65 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 TRBV6-4A0A1B0GX49 114 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 JMJD7-PLA2G4BH0Y9G9 81 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 DNAL4O96015 105 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 RNASE3P12724 160 aaKnown RBP0.76□□□□□ -2.29
VPS50-213ENST00000477572 IL9P15248 144 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 ZNF137PP52743 207 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 CAV3P56539 151 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 RPL37AP61513 92 aaKnown RBP0.76□□□□□ -2.29
VPS50-213ENST00000477572 FXYD3Q14802 87 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 NREPQ16612 68 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 SPRR4Q96PI1 79 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 WFDC10AQ9H1F0 79 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 LINC00846Q9NV44 126 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 R4GMQ9 66 aa0.76□□□□□ -2.29
VPS50-213ENST00000477572 TULP4Q9NRJ4 1543 aa0.75□□□□□ -2.29
VPS50-213ENST00000477572 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.75□□□□□ -2.29
VPS50-213ENST00000477572 H0Y9P7 68 aa0.75□□□□□ -2.29
VPS50-213ENST00000477572 UQCR11O14957 56 aa0.75□□□□□ -2.29
VPS50-213ENST00000477572 C10orf55Q5SWW7 151 aa0.75□□□□□ -2.29
VPS50-213ENST00000477572 C10orf113Q5VZT2 155 aa0.75□□□□□ -2.29
VPS50-213ENST00000477572 ENHOQ6UWT2 76 aa0.75□□□□□ -2.29
VPS50-213ENST00000477572 LINC00322Q6ZN03 302 aaPredicted RBP0.75□□□□□ -2.29
VPS50-213ENST00000477572 C5orf56Q8N8D9 126 aa0.75□□□□□ -2.29
VPS50-213ENST00000477572 WFDC9Q8NEX5 89 aa0.75□□□□□ -2.29
VPS50-213ENST00000477572 TMEM263Q8WUH6 116 aaKnown RBP0.75□□□□□ -2.29
VPS50-213ENST00000477572 LINC00208Q96KT6 92 aa0.75□□□□□ -2.29
VPS50-213ENST00000477572 Q96NJ1 140 aa0.75□□□□□ -2.29
VPS50-213ENST00000477572 WFDC6Q9BQY6 131 aa0.75□□□□□ -2.29
VPS50-213ENST00000477572 LINC00472Q9H8W2 130 aa0.75□□□□□ -2.29
VPS50-213ENST00000477572 ABRACLQ9P1F3 81 aa0.75□□□□□ -2.29
VPS50-213ENST00000477572 V9GYV3 84 aa0.75□□□□□ -2.29
VPS50-213ENST00000477572 ATP7AQ04656 1500 aa0.74□□□□□ -2.29
VPS50-213ENST00000477572 TRGV1A0A0A0MS02 117 aa0.74□□□□□ -2.29
VPS50-213ENST00000477572 TRAV1-2A0A0B4J238 106 aa0.74□□□□□ -2.29
VPS50-213ENST00000477572 LCE6AA0A183 80 aa0.74□□□□□ -2.29
VPS50-213ENST00000477572 LINC00959A0A1B0GUT2 108 aa0.74□□□□□ -2.29
VPS50-213ENST00000477572 MGPP08493 103 aa0.74□□□□□ -2.29
VPS50-213ENST00000477572 SPATA8Q6RVD6 105 aa0.74□□□□□ -2.29
VPS50-213ENST00000477572 DEFB132Q7Z7B7 95 aa0.74□□□□□ -2.29
VPS50-213ENST00000477572 C4orf3Q8WVX3 66 aa0.74□□□□□ -2.29
VPS50-213ENST00000477572 URB1O60287 2271 aaKnown RBP0.74□□□□□ -2.29
VPS50-213ENST00000477572 GCC2Q8IWJ2 1684 aa0.74□□□□□ -2.29
VPS50-213ENST00000477572 CACNA1BQ00975 2339 aa0.73□□□□□ -2.29
VPS50-213ENST00000477572 ASXL3Q9C0F0 2248 aa0.73□□□□□ -2.29
VPS50-213ENST00000477572 FBN2P35556 2912 aa0.73□□□□□ -2.29
VPS50-213ENST00000477572 TRBV6-1A0A0K0K1D8 114 aa0.73□□□□□ -2.29
VPS50-213ENST00000477572 SMIM27A0A1W2PRY6 76 aa0.73□□□□□ -2.29
VPS50-213ENST00000477572 M0R1W7 72 aa0.73□□□□□ -2.29
VPS50-213ENST00000477572 FXYD4P59646 89 aa0.73□□□□□ -2.29
VPS50-213ENST00000477572 DEFB112Q30KQ8 113 aa0.73□□□□□ -2.29
VPS50-213ENST00000477572 OBSCN-AS1Q96MR7 158 aa0.73□□□□□ -2.29
VPS50-213ENST00000477572 BPTFQ12830 3046 aa0.73□□□□□ -2.29
VPS50-213ENST00000477572 SAMD9LQ8IVG5 1584 aa0.73□□□□□ -2.29
VPS50-213ENST00000477572 KNTC1P50748 2209 aa0.73□□□□□ -2.29
VPS50-213ENST00000477572 DUOX1Q9NRD9 1551 aa0.72□□□□□ -2.29
VPS50-213ENST00000477572 LOC110117498A0A087WWA1 95 aa0.72□□□□□ -2.29
VPS50-213ENST00000477572 IGIPA6NJ69 53 aa0.72□□□□□ -2.29
VPS50-213ENST00000477572 I3L3M4 83 aa0.72□□□□□ -2.29
VPS50-213ENST00000477572 NDUFA4O00483 81 aa0.72□□□□□ -2.29
VPS50-213ENST00000477572 SPINK4O60575 86 aa0.72□□□□□ -2.29
VPS50-213ENST00000477572 NDUFB1O75438 58 aa0.72□□□□□ -2.29
VPS50-213ENST00000477572 ACYP2P14621 99 aa0.72□□□□□ -2.29
VPS50-213ENST00000477572 COX6B1P14854 86 aa0.72□□□□□ -2.29
VPS50-213ENST00000477572 UNQ6190/PRO20217Q6UXQ8 127 aa0.72□□□□□ -2.29
VPS50-213ENST00000477572 GAFA1Q96PS6 74 aa0.72□□□□□ -2.29
VPS50-213ENST00000477572 UBL5Q9BZL1 73 aa0.72□□□□□ -2.29
VPS50-213ENST00000477572 TMEM14CQ9P0S9 112 aa0.72□□□□□ -2.29
VPS50-213ENST00000477572 TIMM8BQ9Y5J9 83 aaPredicted RBP0.72□□□□□ -2.29
VPS50-213ENST00000477572 ASCC3Q8N3C0 2202 aaKnown RBP0.72□□□□□ -2.29
VPS50-213ENST00000477572 LMO7Q8WWI1 1683 aa0.72□□□□□ -2.29
VPS50-213ENST00000477572 ZDBF2Q9HCK1 2354 aa0.71□□□□□ -2.3
VPS50-213ENST00000477572 AHCTF1Q8WYP5 2266 aa0.71□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms