RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 ZNF726P1Q15940 193 aa2.64□□□□□ -1.99
USP4-209ENST00000475873 BVES-AS1Q5T3Y7 98 aa2.64□□□□□ -1.99
USP4-209ENST00000475873 LINC00242Q5T6M2 205 aa2.64□□□□□ -1.99
USP4-209ENST00000475873 ATP5L2Q7Z4Y8 100 aa2.64□□□□□ -1.99
USP4-209ENST00000475873 C3orf22Q8N5N4 141 aa2.64□□□□□ -1.99
USP4-209ENST00000475873 OR10AG1Q8NH19 301 aa2.64□□□□□ -1.99
USP4-209ENST00000475873 CMTM2Q8TAZ6 248 aa2.64□□□□□ -1.99
USP4-209ENST00000475873 SCGB1C1Q8TD33 95 aa2.64□□□□□ -1.99
USP4-209ENST00000475873 CHCHD10Q8WYQ3 142 aaPredicted RBP2.64□□□□□ -1.99
USP4-209ENST00000475873 AQP10Q96PS8 301 aa2.64□□□□□ -1.99
USP4-209ENST00000475873 RBM12B-AS1Q9P1G2 102 aa2.64□□□□□ -1.99
USP4-209ENST00000475873 PHLDA3Q9Y5J5 127 aa2.64□□□□□ -1.99
USP4-209ENST00000475873 MDN1Q9NU22 5596 aa2.64□□□□□ -1.99
USP4-209ENST00000475873 TRBV20-1A0A075B6N2 111 aa2.63□□□□□ -1.99
USP4-209ENST00000475873 IGKV3OR2-268A0A0C4DH90 116 aa2.63□□□□□ -1.99
USP4-209ENST00000475873 TRBV6-1A0A0K0K1D8 114 aa2.63□□□□□ -1.99
USP4-209ENST00000475873 MUC21A0A140T8X8 626 aa2.63□□□□□ -1.99
USP4-209ENST00000475873 A0A1B0GUV1 79 aa2.63□□□□□ -1.99
USP4-209ENST00000475873 A0A1W2PPM0 123 aa2.63□□□□□ -1.99
USP4-209ENST00000475873 H3BVH4 76 aa2.63□□□□□ -1.99
USP4-209ENST00000475873 ZNF861PO60384 105 aa2.63□□□□□ -1.99
USP4-209ENST00000475873 NDUFB6O95139 128 aa2.63□□□□□ -1.99
USP4-209ENST00000475873 APOMO95445 188 aa2.63□□□□□ -1.99
USP4-209ENST00000475873 CXCL1P09341 107 aa2.63□□□□□ -1.99
USP4-209ENST00000475873 FOXA3P55318 350 aaPredicted RBP2.63□□□□□ -1.99
USP4-209ENST00000475873 PMCHL1Q16048 86 aa2.63□□□□□ -1.99
USP4-209ENST00000475873 PAPPA-AS1Q5QFB9 102 aa2.63□□□□□ -1.99
USP4-209ENST00000475873 FP248Q71RG6 208 aaPredicted RBP2.63□□□□□ -1.99
USP4-209ENST00000475873 PRR15Q8IV56 129 aa2.63□□□□□ -1.99
USP4-209ENST00000475873 ATOH7Q8N100 152 aa2.63□□□□□ -1.99
USP4-209ENST00000475873 NUP35Q8NFH5 326 aa2.63□□□□□ -1.99
USP4-209ENST00000475873 COPS9Q8WXC6 57 aa2.63□□□□□ -1.99
USP4-209ENST00000475873 OPRPNQ99935 248 aaPredicted RBP2.63□□□□□ -1.99
USP4-209ENST00000475873 PMCHL2Q9BQD1 86 aa2.63□□□□□ -1.99
USP4-209ENST00000475873 KRTAP9-3Q9BYQ3 159 aa2.63□□□□□ -1.99
USP4-209ENST00000475873 IL36BQ9NZH7 164 aa2.63□□□□□ -1.99
USP4-209ENST00000475873 TRBV24-1A0A075B6N3 115 aa2.62□□□□□ -1.99
USP4-209ENST00000475873 TRBV25-1A0A075B6N4 114 aa2.62□□□□□ -1.99
USP4-209ENST00000475873 TRAV13-1A0A0B4J241 112 aa2.62□□□□□ -1.99
USP4-209ENST00000475873 NDUFS5O43920 106 aa2.62□□□□□ -1.99
USP4-209ENST00000475873 TRACP01848 142 aa2.62□□□□□ -1.99
USP4-209ENST00000475873 CFC1P0CG37 223 aa2.62□□□□□ -1.99
USP4-209ENST00000475873 CSN1S1P47710 185 aa2.62□□□□□ -1.99
USP4-209ENST00000475873 GPR98Q8WXG9 6306 aa2.62□□□□□ -1.99
USP4-209ENST00000475873 IGLV8-61A0A075B6I0 122 aa2.61□□□□□ -1.99
USP4-209ENST00000475873 C17orf112F2Z3M2 114 aa2.61□□□□□ -1.99
USP4-209ENST00000475873 H3BUT2 72 aa2.61□□□□□ -1.99
USP4-209ENST00000475873 ARMS2P0C7Q2 107 aa2.61□□□□□ -1.99
USP4-209ENST00000475873 PCOTHQ58A44 107 aa2.61□□□□□ -1.99
USP4-209ENST00000475873 CENPWQ5EE01 88 aa2.61□□□□□ -1.99
USP4-209ENST00000475873 Q75L30 129 aa2.61□□□□□ -1.99
USP4-209ENST00000475873 KTN1-AS1Q86SY8 53 aa2.61□□□□□ -1.99
USP4-209ENST00000475873 FAM213BQ8TBF2 198 aa2.61□□□□□ -1.99
USP4-209ENST00000475873 C20orf78Q9BR46 151 aa2.61□□□□□ -1.99
USP4-209ENST00000475873 SMDT1Q9H4I9 107 aa2.61□□□□□ -1.99
USP4-209ENST00000475873 OTORQ9NRC9 128 aa2.61□□□□□ -1.99
USP4-209ENST00000475873 IGLV4-69A0A075B6H9 119 aa2.6□□□□□ -1.99
USP4-209ENST00000475873 IGHV1-24A0A0C4DH33 117 aa2.6□□□□□ -1.99
USP4-209ENST00000475873 UBE2L5PA0A1B0GUS4 154 aa2.6□□□□□ -1.99
USP4-209ENST00000475873 A0A1B0GXF2 115 aa2.6□□□□□ -1.99
USP4-209ENST00000475873 NAP1L6A6NFF2 107 aa2.6□□□□□ -1.99
USP4-209ENST00000475873 M0R381 172 aa2.6□□□□□ -1.99
USP4-209ENST00000475873 MT2AP02795 61 aa2.6□□□□□ -1.99
USP4-209ENST00000475873 MT1FP04733 61 aa2.6□□□□□ -1.99
USP4-209ENST00000475873 S100A4P26447 101 aaKnown RBP2.6□□□□□ -1.99
USP4-209ENST00000475873 KRTDAPP60985 99 aa2.6□□□□□ -1.99
USP4-209ENST00000475873 NPC2P61916 151 aa2.6□□□□□ -1.99
USP4-209ENST00000475873 RIGQ13278 110 aa2.6□□□□□ -1.99
USP4-209ENST00000475873 Q6ZVQ6 151 aa2.6□□□□□ -1.99
USP4-209ENST00000475873 PPDPFLQ8WWR9 84 aa2.6□□□□□ -1.99
USP4-209ENST00000475873 PRELID3AQ96N28 172 aa2.6□□□□□ -1.99
USP4-209ENST00000475873 NMES1Q9C002 83 aa2.6□□□□□ -1.99
USP4-209ENST00000475873 SMIM26A0A096LP01 95 aa2.59□□□□□ -1.99
USP4-209ENST00000475873 IGHV1-58A0A0C4DH39 117 aa2.59□□□□□ -1.99
USP4-209ENST00000475873 TRBV7-6A0A0J9YX20 115 aa2.59□□□□□ -1.99
USP4-209ENST00000475873 NDUFC2-KCTD14E9PQ53 114 aa2.59□□□□□ -1.99
USP4-209ENST00000475873 H3BMG7 143 aa2.59□□□□□ -1.99
USP4-209ENST00000475873 SYS1-DBNDD2H3BUS1 97 aa2.59□□□□□ -1.99
USP4-209ENST00000475873 CST7O76096 145 aa2.59□□□□□ -1.99
USP4-209ENST00000475873 TCRAP04437 139 aa2.59□□□□□ -1.99
USP4-209ENST00000475873 BTCP35070 178 aa2.59□□□□□ -1.99
USP4-209ENST00000475873 FAUP35544 74 aaKnown RBP2.59□□□□□ -1.99
USP4-209ENST00000475873 XCL1P47992 114 aa2.59□□□□□ -1.99
USP4-209ENST00000475873 UBE2L3P68036 154 aaKnown RBP2.59□□□□□ -1.99
USP4-209ENST00000475873 OR5C1Q8NGR4 320 aa2.59□□□□□ -1.99
USP4-209ENST00000475873 TMEM243Q9BU79 118 aa2.59□□□□□ -1.99
USP4-209ENST00000475873 IMUPQ9GZP8 106 aa2.59□□□□□ -1.99
USP4-209ENST00000475873 EIF5A2Q9GZV4 153 aaKnown RBP2.59□□□□□ -1.99
USP4-209ENST00000475873 C11orf1Q9H5F2 150 aa2.59□□□□□ -1.99
USP4-209ENST00000475873 TMEM242Q9NWH2 141 aa2.59□□□□□ -1.99
USP4-209ENST00000475873 SERP1Q9Y6X1 66 aa2.59□□□□□ -1.99
USP4-209ENST00000475873 A8MWL6 223 aa2.58□□□□□ -2
USP4-209ENST00000475873 C9JQL5 133 aa2.58□□□□□ -2
USP4-209ENST00000475873 UBE2L6O14933 153 aa2.58□□□□□ -2
USP4-209ENST00000475873 ZNF73O43830 326 aaPredicted RBP2.58□□□□□ -2
USP4-209ENST00000475873 COX7CP15954 63 aa2.58□□□□□ -2
USP4-209ENST00000475873 CXCL5P42830 114 aa2.58□□□□□ -2
USP4-209ENST00000475873 PSMB2P49721 201 aa2.58□□□□□ -2
USP4-209ENST00000475873 CRIP1P50238 77 aa2.58□□□□□ -2
USP4-209ENST00000475873 UBE2BP63146 152 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms