RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 ZNF625Q96I27 306 aaPredicted RBP4.07□□□□□ -1.76
HDAC3-207ENST00000475549 RETNLBQ9BQ08 111 aa4.07□□□□□ -1.76
HDAC3-207ENST00000475549 KRTAP9-2Q9BYQ4 174 aa4.07□□□□□ -1.76
HDAC3-207ENST00000475549 C11orf86A6NJI1 115 aa4.06□□□□□ -1.76
HDAC3-207ENST00000475549 H3BRM9 83 aa4.06□□□□□ -1.76
HDAC3-207ENST00000475549 M0R378 163 aa4.06□□□□□ -1.76
HDAC3-207ENST00000475549 UBE2AP49459 152 aa4.06□□□□□ -1.76
HDAC3-207ENST00000475549 NDUFA6P56556 154 aa4.06□□□□□ -1.76
HDAC3-207ENST00000475549 NKAPP1Q8N9T2 125 aa4.06□□□□□ -1.76
HDAC3-207ENST00000475549 PLEKHB2Q96CS7 222 aa4.06□□□□□ -1.76
HDAC3-207ENST00000475549 TMEM126AQ9H061 195 aa4.06□□□□□ -1.76
HDAC3-207ENST00000475549 RPS10P5Q9NQ39 176 aa4.06□□□□□ -1.76
HDAC3-207ENST00000475549 ERG28Q9UKR5 140 aa4.06□□□□□ -1.76
HDAC3-207ENST00000475549 FAT4Q6V0I7 4981 aa4.06□□□□□ -1.76
HDAC3-207ENST00000475549 KRTAP9-6A0A140TA67 174 aa4.05□□□□□ -1.76
HDAC3-207ENST00000475549 COX19Q49B96 90 aa4.05□□□□□ -1.76
HDAC3-207ENST00000475549 FAM229BQ4G0N7 80 aa4.05□□□□□ -1.76
HDAC3-207ENST00000475549 COMMD7Q86VX2 200 aa4.05□□□□□ -1.76
HDAC3-207ENST00000475549 SMCO4Q9NRQ5 59 aa4.05□□□□□ -1.76
HDAC3-207ENST00000475549 HBDP02042 147 aa4.04□□□□□ -1.76
HDAC3-207ENST00000475549 COX17Q14061 63 aa4.04□□□□□ -1.76
HDAC3-207ENST00000475549 RHEBQ15382 184 aa4.04□□□□□ -1.76
HDAC3-207ENST00000475549 BAGE3Q86Y29 109 aa4.04□□□□□ -1.76
HDAC3-207ENST00000475549 LINC00304Q8N9R0 145 aa4.04□□□□□ -1.76
HDAC3-207ENST00000475549 TRAPPC1Q9Y5R8 145 aa4.04□□□□□ -1.76
HDAC3-207ENST00000475549 TMEM170BQ5T4T1 132 aa4.03□□□□□ -1.76
HDAC3-207ENST00000475549 FAM19A1Q7Z5A9 133 aa4.03□□□□□ -1.76
HDAC3-207ENST00000475549 C3orf22Q8N5N4 141 aa4.03□□□□□ -1.76
HDAC3-207ENST00000475549 YPEL4Q96NS1 127 aa4.03□□□□□ -1.76
HDAC3-207ENST00000475549 IGKV2D-26A0A0A0MRZ7 120 aa4.02□□□□□ -1.77
HDAC3-207ENST00000475549 A0A0U1RRA0 63 aa4.02□□□□□ -1.77
HDAC3-207ENST00000475549 TMEM223A0PJW6 202 aa4.02□□□□□ -1.77
HDAC3-207ENST00000475549 RPL24P83731 157 aaKnown RBP4.02□□□□□ -1.77
HDAC3-207ENST00000475549 CBLN2Q8IUK8 224 aa4.02□□□□□ -1.77
HDAC3-207ENST00000475549 IGLV7-46A0A075B6I9 117 aa4.01□□□□□ -1.77
HDAC3-207ENST00000475549 LINC00158P58513 81 aa4.01□□□□□ -1.77
HDAC3-207ENST00000475549 TPRXLQ17RH7 258 aa4.01□□□□□ -1.77
HDAC3-207ENST00000475549 SPRR4Q96PI1 79 aa4.01□□□□□ -1.77
HDAC3-207ENST00000475549 CHTOPQ9Y3Y2 248 aaKnown RBP4.01□□□□□ -1.77
HDAC3-207ENST00000475549 KRTAP4-16G5E9R7 235 aaPredicted RBP4□□□□□ -1.77
HDAC3-207ENST00000475549 APOC3P02656 99 aa4□□□□□ -1.77
HDAC3-207ENST00000475549 SMIM13P0DJ93 91 aa4□□□□□ -1.77
HDAC3-207ENST00000475549 HIGD2AQ9BW72 106 aa4□□□□□ -1.77
HDAC3-207ENST00000475549 TRAV12-1A0A0B4J245 112 aa3.99□□□□□ -1.77
HDAC3-207ENST00000475549 SPRR1AP35321 89 aa3.99□□□□□ -1.77
HDAC3-207ENST00000475549 CTAG1AP78358 180 aa3.99□□□□□ -1.77
HDAC3-207ENST00000475549 DAND5Q8N907 189 aa3.99□□□□□ -1.77
HDAC3-207ENST00000475549 PPDPFQ9H3Y8 114 aa3.99□□□□□ -1.77
HDAC3-207ENST00000475549 KCNQ1DNQ9H478 68 aa3.99□□□□□ -1.77
HDAC3-207ENST00000475549 MUC17Q685J3 4493 aa3.98□□□□□ -1.77
HDAC3-207ENST00000475549 SFTA2Q6UW10 78 aa3.98□□□□□ -1.77
HDAC3-207ENST00000475549 BOD1L2Q8IYS8 172 aa3.98□□□□□ -1.77
HDAC3-207ENST00000475549 FAM19A2Q8N3H0 131 aa3.98□□□□□ -1.77
HDAC3-207ENST00000475549 MIR7-3HGQ8N6C7 128 aa3.98□□□□□ -1.77
HDAC3-207ENST00000475549 SMCR5Q8TEV8 140 aa3.98□□□□□ -1.77
HDAC3-207ENST00000475549 IFI27L1Q96BM0 104 aa3.98□□□□□ -1.77
HDAC3-207ENST00000475549 CHCHD1Q96BP2 118 aaKnown RBP3.98□□□□□ -1.77
HDAC3-207ENST00000475549 TRBV10-3A0A0K0K1G6 114 aa3.97□□□□□ -1.77
HDAC3-207ENST00000475549 A0A0U1RQV1 116 aa3.97□□□□□ -1.77
HDAC3-207ENST00000475549 NCR3O14931 201 aa3.97□□□□□ -1.77
HDAC3-207ENST00000475549 ERC2-IT1O76042 136 aa3.97□□□□□ -1.77
HDAC3-207ENST00000475549 LINC00310P59036 64 aa3.97□□□□□ -1.77
HDAC3-207ENST00000475549 TSPEAR-AS2P59090 65 aa3.97□□□□□ -1.77
HDAC3-207ENST00000475549 LCE3BQ5TA77 95 aa3.97□□□□□ -1.77
HDAC3-207ENST00000475549 SVBPQ8N300 66 aa3.97□□□□□ -1.77
HDAC3-207ENST00000475549 PRYO14603 147 aa3.96□□□□□ -1.78
HDAC3-207ENST00000475549 SNAPINO95295 136 aa3.96□□□□□ -1.78
HDAC3-207ENST00000475549 KRTAP13-3Q3SY46 172 aa3.96□□□□□ -1.78
HDAC3-207ENST00000475549 LINC00483Q53H64 154 aa3.96□□□□□ -1.78
HDAC3-207ENST00000475549 SPAG11AQ6PDA7 123 aa3.96□□□□□ -1.78
HDAC3-207ENST00000475549 LINC00337Q8N6G1 96 aa3.96□□□□□ -1.78
HDAC3-207ENST00000475549 Q8NBF4 154 aa3.96□□□□□ -1.78
HDAC3-207ENST00000475549 KRTAP4-12Q9BQ66 201 aa3.96□□□□□ -1.78
HDAC3-207ENST00000475549 KRTAP4-1Q9BYQ7 146 aa3.96□□□□□ -1.78
HDAC3-207ENST00000475549 NDUFA12Q9UI09 145 aa3.96□□□□□ -1.78
HDAC3-207ENST00000475549 LOC107984156A0A0G2JMH3 177 aa3.95□□□□□ -1.78
HDAC3-207ENST00000475549 B5MCH6 92 aa3.95□□□□□ -1.78
HDAC3-207ENST00000475549 MEIG1Q5JSS6 88 aa3.95□□□□□ -1.78
HDAC3-207ENST00000475549 ARL17AQ8IVW1 177 aa3.95□□□□□ -1.78
HDAC3-207ENST00000475549 H0Y8G0 127 aa3.94□□□□□ -1.78
HDAC3-207ENST00000475549 ATP6V1G1O75348 118 aa3.94□□□□□ -1.78
HDAC3-207ENST00000475549 TRGC2P03986 189 aa3.94□□□□□ -1.78
HDAC3-207ENST00000475549 HERV-K104P63124 156 aa3.94□□□□□ -1.78
HDAC3-207ENST00000475549 GAGE2AQ6NT46 116 aa3.94□□□□□ -1.78
HDAC3-207ENST00000475549 Q9BRP9 147 aa3.94□□□□□ -1.78
HDAC3-207ENST00000475549 ZNF706Q9Y5V0 76 aaPredicted RBP3.94□□□□□ -1.78
HDAC3-207ENST00000475549 MYMXA0A1B0GTQ4 84 aa3.93□□□□□ -1.78
HDAC3-207ENST00000475549 C9orf118A6NHY6 69 aa3.93□□□□□ -1.78
HDAC3-207ENST00000475549 LEPROTO15243 131 aa3.93□□□□□ -1.78
HDAC3-207ENST00000475549 HSBP1O75506 76 aa3.93□□□□□ -1.78
HDAC3-207ENST00000475549 SERF1AO75920 110 aa3.93□□□□□ -1.78
HDAC3-207ENST00000475549 SPINK1P00995 79 aa3.93□□□□□ -1.78
HDAC3-207ENST00000475549 ADAMTSL4-AS1Q5T5F5 129 aa3.93□□□□□ -1.78
HDAC3-207ENST00000475549 FP248Q71RG6 208 aaPredicted RBP3.93□□□□□ -1.78
HDAC3-207ENST00000475549 ETDCA0A1B0GVM5 59 aa3.92□□□□□ -1.78
HDAC3-207ENST00000475549 LINC00587B1AMM8 73 aa3.92□□□□□ -1.78
HDAC3-207ENST00000475549 IGLV6-57P01721 117 aa3.92□□□□□ -1.78
HDAC3-207ENST00000475549 NDUFA5Q16718 116 aa3.92□□□□□ -1.78
HDAC3-207ENST00000475549 ASB16-AS1Q495Z4 193 aa3.92□□□□□ -1.78
HDAC3-207ENST00000475549 SOSTDC1Q6X4U4 206 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms