RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 PCNTO95613 3336 aa6.19□□□□□ -1.42
COL6A3-210ENST00000473258 Q6ZSN1 163 aa6.18□□□□□ -1.42
COL6A3-210ENST00000473258 Q6ZRP5 223 aa6.18□□□□□ -1.42
COL6A3-210ENST00000473258 CEP192Q8TEP8 1941 aa6.18□□□□□ -1.42
COL6A3-210ENST00000473258 FAM229AH3BQW9 127 aa6.18□□□□□ -1.42
COL6A3-210ENST00000473258 PTPRBP23467 1997 aa6.17□□□□□ -1.42
COL6A3-210ENST00000473258 LINC00315P59091 139 aa6.17□□□□□ -1.42
COL6A3-210ENST00000473258 PLXNB3Q9ULL4 1909 aa6.17□□□□□ -1.42
COL6A3-210ENST00000473258 NUP210LQ5VU65 1888 aa6.17□□□□□ -1.42
COL6A3-210ENST00000473258 PHF5AQ7RTV0 110 aaKnown RBP6.17□□□□□ -1.42
COL6A3-210ENST00000473258 TNS1Q9HBL0 1735 aaKnown RBP6.17□□□□□ -1.42
COL6A3-210ENST00000473258 FAM229BQ4G0N7 80 aa6.16□□□□□ -1.42
COL6A3-210ENST00000473258 HIVEP2P31629 2446 aa6.16□□□□□ -1.42
COL6A3-210ENST00000473258 INAFM1C9JVW0 142 aa6.16□□□□□ -1.42
COL6A3-210ENST00000473258 VWA8A3KMH1 1905 aa6.16□□□□□ -1.42
COL6A3-210ENST00000473258 Q8N9P0 234 aaPredicted RBP6.16□□□□□ -1.42
COL6A3-210ENST00000473258 MRPL34Q9BQ48 92 aaKnown RBP6.16□□□□□ -1.42
COL6A3-210ENST00000473258 NUP210Q8TEM1 1887 aaPredicted RBP6.15□□□□□ -1.42
COL6A3-210ENST00000473258 KIF26AQ9ULI4 1882 aaPredicted RBP6.15□□□□□ -1.42
COL6A3-210ENST00000473258 Q5VV11 94 aa6.15□□□□□ -1.43
COL6A3-210ENST00000473258 C2orf16Q68DN1 1984 aa6.14□□□□□ -1.43
COL6A3-210ENST00000473258 ST20-AS1Q8NBB2 130 aa6.14□□□□□ -1.43
COL6A3-210ENST00000473258 C22orf24Q9Y442 160 aa6.14□□□□□ -1.43
COL6A3-210ENST00000473258 OXTP01178 125 aa6.14□□□□□ -1.43
COL6A3-210ENST00000473258 LY6G6DO95868 133 aa6.14□□□□□ -1.43
COL6A3-210ENST00000473258 CYSTM1Q9H1C7 97 aa6.14□□□□□ -1.43
COL6A3-210ENST00000473258 OCR1Q9BZK8 76 aa6.13□□□□□ -1.43
COL6A3-210ENST00000473258 PRO3102Q9H379 93 aa6.13□□□□□ -1.43
COL6A3-210ENST00000473258 COL4A3Q01955 1670 aa6.13□□□□□ -1.43
COL6A3-210ENST00000473258 Q6ZRX8 168 aa6.13□□□□□ -1.43
COL6A3-210ENST00000473258 LINC01558Q9Y6Z2 57 aa6.12□□□□□ -1.43
COL6A3-210ENST00000473258 U3KQA8 63 aa6.12□□□□□ -1.43
COL6A3-210ENST00000473258 C9orf163Q8N9P6 203 aa6.12□□□□□ -1.43
COL6A3-210ENST00000473258 SRCAPQ6ZRS2 3230 aa6.12□□□□□ -1.43
COL6A3-210ENST00000473258 COL4A1P02462 1669 aa6.11□□□□□ -1.43
COL6A3-210ENST00000473258 ABCA2Q9BZC7 2435 aa6.11□□□□□ -1.43
COL6A3-210ENST00000473258 ADORA2A-AS1P86434 159 aa6.11□□□□□ -1.43
COL6A3-210ENST00000473258 LMO4P61968 165 aa6.1□□□□□ -1.43
COL6A3-210ENST00000473258 SIP14410 1827 aa6.1□□□□□ -1.43
COL6A3-210ENST00000473258 PRR26Q8N8Z3 221 aa6.1□□□□□ -1.43
COL6A3-210ENST00000473258 CSNK1G2-AS1Q8NCQ2 148 aa6.1□□□□□ -1.43
COL6A3-210ENST00000473258 IGLV1-51P01701 117 aa6.1□□□□□ -1.43
COL6A3-210ENST00000473258 LINC00167Q96N53 147 aa6.1□□□□□ -1.43
COL6A3-210ENST00000473258 CHTF8P0CG12 524 aa6.1□□□□□ -1.43
COL6A3-210ENST00000473258 IGFL2Q6UWQ7 119 aa6.1□□□□□ -1.43
COL6A3-210ENST00000473258 CCDC168Q8NDH2 2452 aa6.09□□□□□ -1.43
COL6A3-210ENST00000473258 C10orf99Q6UWK7 81 aa6.09□□□□□ -1.43
COL6A3-210ENST00000473258 ATG2AQ2TAZ0 1938 aa6.09□□□□□ -1.43
COL6A3-210ENST00000473258 IGLV1-40P01703 118 aa6.09□□□□□ -1.43
COL6A3-210ENST00000473258 LINC01556Q5JQF7 62 aa6.09□□□□□ -1.43
COL6A3-210ENST00000473258 ACACBO00763 2458 aa6.09□□□□□ -1.44
COL6A3-210ENST00000473258 FAM104AQ969W3 186 aa6.08□□□□□ -1.44
COL6A3-210ENST00000473258 WWC2-AS2Q96NR7 200 aa6.08□□□□□ -1.44
COL6A3-210ENST00000473258 EIF4EBP3O60516 100 aaPredicted RBP6.08□□□□□ -1.44
COL6A3-210ENST00000473258 IGLV6-57P01721 117 aa6.08□□□□□ -1.44
COL6A3-210ENST00000473258 ODF3L2Q3SX64 289 aa6.07□□□□□ -1.44
COL6A3-210ENST00000473258 ASB16-AS1Q495Z4 193 aa6.07□□□□□ -1.44
COL6A3-210ENST00000473258 C8orf17Q9NRJ1 99 aa6.06□□□□□ -1.44
COL6A3-210ENST00000473258 KCNQ1DNQ9H478 68 aa6.06□□□□□ -1.44
COL6A3-210ENST00000473258 KIAA1671Q9BY89 1806 aa6.05□□□□□ -1.44
COL6A3-210ENST00000473258 OBSCN-AS1Q96MR7 158 aa6.05□□□□□ -1.44
COL6A3-210ENST00000473258 COL5A1P20908 1838 aaPredicted RBP6.05□□□□□ -1.44
COL6A3-210ENST00000473258 IGLV7-46A0A075B6I9 117 aa6.04□□□□□ -1.44
COL6A3-210ENST00000473258 Q8NA96 180 aa6.04□□□□□ -1.44
COL6A3-210ENST00000473258 TLX1NBP0CAT3 122 aa6.04□□□□□ -1.44
COL6A3-210ENST00000473258 Q6YL49 198 aa6.04□□□□□ -1.44
COL6A3-210ENST00000473258 TLN2Q9Y4G6 2542 aa6.03□□□□□ -1.44
COL6A3-210ENST00000473258 FN1P02751 2386 aaKnown RBP6.03□□□□□ -1.44
COL6A3-210ENST00000473258 COL11A2P13942 1736 aaPredicted RBP6.02□□□□□ -1.45
COL6A3-210ENST00000473258 LINC00528Q8N1L1 170 aa6.02□□□□□ -1.45
COL6A3-210ENST00000473258 NOTCH2Q04721 2471 aa6.02□□□□□ -1.45
COL6A3-210ENST00000473258 SPINK7P58062 85 aa6.02□□□□□ -1.45
COL6A3-210ENST00000473258 FLG2Q5D862 2391 aaPredicted RBP6.01□□□□□ -1.45
COL6A3-210ENST00000473258 PLA2G2DQ9UNK4 145 aa6.01□□□□□ -1.45
COL6A3-210ENST00000473258 SPACA4Q8TDM5 124 aa6□□□□□ -1.45
COL6A3-210ENST00000473258 FBXL19-AS1Q494R0 122 aa6□□□□□ -1.45
COL6A3-210ENST00000473258 Q8NAQ8 132 aa6□□□□□ -1.45
COL6A3-210ENST00000473258 A0A0D9SG42 100 aa6□□□□□ -1.45
COL6A3-210ENST00000473258 PIEZO1Q92508 2521 aa6□□□□□ -1.45
COL6A3-210ENST00000473258 IGFL1Q6UW32 110 aa5.99□□□□□ -1.45
COL6A3-210ENST00000473258 LRRK2Q5S007 2527 aa5.99□□□□□ -1.45
COL6A3-210ENST00000473258 A0A1B0GVX0 72 aa5.99□□□□□ -1.45
COL6A3-210ENST00000473258 M0R2N4 97 aa5.99□□□□□ -1.45
COL6A3-210ENST00000473258 LTBP1Q14766 1721 aa5.98□□□□□ -1.45
COL6A3-210ENST00000473258 GVQW2A0A096LPI5 108 aaPredicted RBP5.98□□□□□ -1.45
COL6A3-210ENST00000473258 PTPRSQ13332 1948 aa5.98□□□□□ -1.45
COL6A3-210ENST00000473258 CAMK2N1Q7Z7J9 78 aa5.98□□□□□ -1.45
COL6A3-210ENST00000473258 SEC61BP60468 96 aaKnown RBP5.98□□□□□ -1.45
COL6A3-210ENST00000473258 ADAMTS20P59510 1910 aa5.98□□□□□ -1.45
COL6A3-210ENST00000473258 ACANP16112 2415 aa5.97□□□□□ -1.45
COL6A3-210ENST00000473258 C18orf65Q6ZTR6 163 aa5.97□□□□□ -1.45
COL6A3-210ENST00000473258 A0A1B0GU33 70 aa5.97□□□□□ -1.45
COL6A3-210ENST00000473258 Q8N377 158 aa5.96□□□□□ -1.45
COL6A3-210ENST00000473258 COL4A5P29400 1685 aa5.96□□□□□ -1.46
COL6A3-210ENST00000473258 POLQO75417 2590 aa5.95□□□□□ -1.46
COL6A3-210ENST00000473258 EP400Q96L91 3159 aa5.95□□□□□ -1.46
COL6A3-210ENST00000473258 C16orf95Q9H693 158 aa5.95□□□□□ -1.46
COL6A3-210ENST00000473258 WISP2O76076 250 aa5.94□□□□□ -1.46
COL6A3-210ENST00000473258 A0A1W2PNM2 257 aa5.94□□□□□ -1.46
COL6A3-210ENST00000473258 Q96NJ1 140 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms