RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 TP53AIP1Q9HCN2 124 aa6.07□□□□□ -1.44
HPS4-209ENST00000466781 CXCL6P80162 114 aa6.06□□□□□ -1.44
HPS4-209ENST00000466781 TMEM254Q8TBM7 123 aa6.06□□□□□ -1.44
HPS4-209ENST00000466781 VPS13AQ96RL7 3174 aa6.06□□□□□ -1.44
HPS4-209ENST00000466781 SMIM29Q86T20 159 aa6.06□□□□□ -1.44
HPS4-209ENST00000466781 SHANK1Q9Y566 2161 aa6.06□□□□□ -1.44
HPS4-209ENST00000466781 TET2Q6N021 2002 aaPredicted RBP6.06□□□□□ -1.44
HPS4-209ENST00000466781 HCFC1P51610 2035 aa6.06□□□□□ -1.44
HPS4-209ENST00000466781 KIF25-AS1Q9Y6Z4 181 aa6.05□□□□□ -1.44
HPS4-209ENST00000466781 SONP18583 2426 aaKnown RBP6.05□□□□□ -1.44
HPS4-209ENST00000466781 Q6ZRP5 223 aa6.05□□□□□ -1.44
HPS4-209ENST00000466781 LINC00167Q96N53 147 aa6.05□□□□□ -1.44
HPS4-209ENST00000466781 Q8NBF4 154 aa6.05□□□□□ -1.44
HPS4-209ENST00000466781 LINC00313P59037 77 aa6.05□□□□□ -1.44
HPS4-209ENST00000466781 PRRC2AP48634 2157 aaKnown RBP6.04□□□□□ -1.44
HPS4-209ENST00000466781 COX8CQ7Z4L0 72 aa6.04□□□□□ -1.44
HPS4-209ENST00000466781 URB1-AS1Q96HZ7 61 aa6.04□□□□□ -1.44
HPS4-209ENST00000466781 Q9UF83 564 aa6.04□□□□□ -1.44
HPS4-209ENST00000466781 PHF5AQ7RTV0 110 aaKnown RBP6.04□□□□□ -1.44
HPS4-209ENST00000466781 COL27A1Q8IZC6 1860 aaPredicted RBP6.04□□□□□ -1.44
HPS4-209ENST00000466781 LINC00315P59091 139 aa6.03□□□□□ -1.44
HPS4-209ENST00000466781 C6orf48Q9UBA6 75 aa6.03□□□□□ -1.44
HPS4-209ENST00000466781 CHTF8P0CG12 524 aa6.03□□□□□ -1.44
HPS4-209ENST00000466781 ATP11AUNQ6ZP68 121 aa6.03□□□□□ -1.44
HPS4-209ENST00000466781 FAM208BQ5VWN6 2430 aa6.02□□□□□ -1.45
HPS4-209ENST00000466781 NBDYA0A0U1RRE5 68 aa6.02□□□□□ -1.45
HPS4-209ENST00000466781 H3BNG1 76 aa6.02□□□□□ -1.45
HPS4-209ENST00000466781 RPL37AP61513 92 aaKnown RBP6.02□□□□□ -1.45
HPS4-209ENST00000466781 LINC00846Q9NV44 126 aa6.02□□□□□ -1.45
HPS4-209ENST00000466781 C11orf72Q8NBR9 251 aa6.01□□□□□ -1.45
HPS4-209ENST00000466781 PRR14LQ5THK1 2151 aa6.01□□□□□ -1.45
HPS4-209ENST00000466781 SPAG11AQ6PDA7 123 aa6.01□□□□□ -1.45
HPS4-209ENST00000466781 MED13LQ71F56 2210 aa6.01□□□□□ -1.45
HPS4-209ENST00000466781 CCDC168Q8NDH2 2452 aa6.01□□□□□ -1.45
HPS4-209ENST00000466781 SPATA3Q8NHX4 192 aa6.01□□□□□ -1.45
HPS4-209ENST00000466781 Q96NJ1 140 aa6.01□□□□□ -1.45
HPS4-209ENST00000466781 WWC2-AS2Q96NR7 200 aa6.01□□□□□ -1.45
HPS4-209ENST00000466781 COX6B2Q6YFQ2 88 aa6□□□□□ -1.45
HPS4-209ENST00000466781 ZFHX4Q86UP3 3567 aa5.99□□□□□ -1.45
HPS4-209ENST00000466781 EPM2AB3EWF7 344 aa5.99□□□□□ -1.45
HPS4-209ENST00000466781 ELOF1P60002 83 aaKnown RBP5.98□□□□□ -1.45
HPS4-209ENST00000466781 LINC00310P59036 64 aa5.98□□□□□ -1.45
HPS4-209ENST00000466781 LINC00476Q8WZB0 136 aa5.98□□□□□ -1.45
HPS4-209ENST00000466781 IGLV5-39A0A0G2JS06 123 aa5.97□□□□□ -1.45
HPS4-209ENST00000466781 BCE1O60756 84 aa5.96□□□□□ -1.45
HPS4-209ENST00000466781 A0A1B0GW54 56 aa5.96□□□□□ -1.46
HPS4-209ENST00000466781 Q6ZRX8 168 aa5.96□□□□□ -1.46
HPS4-209ENST00000466781 TRAV22A0A0B4J277 110 aa5.96□□□□□ -1.46
HPS4-209ENST00000466781 A0A096LNJ9 63 aa5.96□□□□□ -1.46
HPS4-209ENST00000466781 IGHV3OR16-9A0A0B4J2B5 98 aa5.95□□□□□ -1.46
HPS4-209ENST00000466781 LINC00588Q9Y4M8 146 aa5.95□□□□□ -1.46
HPS4-209ENST00000466781 H3BPC8 53 aa5.95□□□□□ -1.46
HPS4-209ENST00000466781 FREM2Q5SZK8 3169 aa5.94□□□□□ -1.46
HPS4-209ENST00000466781 CUL9Q8IWT3 2517 aa5.94□□□□□ -1.46
HPS4-209ENST00000466781 SPINT4Q6UDR6 99 aa5.94□□□□□ -1.46
HPS4-209ENST00000466781 SORL1Q92673 2214 aa5.94□□□□□ -1.46
HPS4-209ENST00000466781 C8orf87E5RJ46 101 aa5.94□□□□□ -1.46
HPS4-209ENST00000466781 BDP1A6H8Y1 2624 aa5.94□□□□□ -1.46
HPS4-209ENST00000466781 IGLV8-61A0A075B6I0 122 aa5.93□□□□□ -1.46
HPS4-209ENST00000466781 AGRNO00468 2067 aa5.93□□□□□ -1.46
HPS4-209ENST00000466781 FAM19A4Q96LR4 140 aa5.93□□□□□ -1.46
HPS4-209ENST00000466781 MYO18BQ8IUG5 2567 aa5.93□□□□□ -1.46
HPS4-209ENST00000466781 LINC01546A6NGU7 62 aa5.92□□□□□ -1.46
HPS4-209ENST00000466781 ST20-AS1Q8NBB2 130 aa5.92□□□□□ -1.46
HPS4-209ENST00000466781 GVQW2A0A096LPI5 108 aaPredicted RBP5.92□□□□□ -1.46
HPS4-209ENST00000466781 PLXNB1O43157 2135 aa5.91□□□□□ -1.46
HPS4-209ENST00000466781 ANKHD1Q8IWZ3 2542 aaKnown RBP5.91□□□□□ -1.46
HPS4-209ENST00000466781 SERTAD4-AS1Q5TG53 156 aa5.91□□□□□ -1.46
HPS4-209ENST00000466781 Q8NAQ8 132 aa5.91□□□□□ -1.46
HPS4-209ENST00000466781 Q6ZQT0 140 aa5.9□□□□□ -1.46
HPS4-209ENST00000466781 CACNA1AO00555 2505 aa5.9□□□□□ -1.46
HPS4-209ENST00000466781 SPG11Q96JI7 2443 aa5.9□□□□□ -1.47
HPS4-209ENST00000466781 LOC101927531A0A1B0GV80 90 aa5.9□□□□□ -1.47
HPS4-209ENST00000466781 A0A096LNT2 108 aa5.9□□□□□ -1.47
HPS4-209ENST00000466781 LOC110117498A0A087WWA1 95 aa5.89□□□□□ -1.47
HPS4-209ENST00000466781 KRTAP10-11P60412 298 aa5.89□□□□□ -1.47
HPS4-209ENST00000466781 IGLV5-45A0A087WSX0 123 aa5.88□□□□□ -1.47
HPS4-209ENST00000466781 LAMA5O15230 3695 aa5.88□□□□□ -1.47
HPS4-209ENST00000466781 A0A0C4DFX4 3053 aa5.88□□□□□ -1.47
HPS4-209ENST00000466781 PIEZO2Q9H5I5 2752 aa5.88□□□□□ -1.47
HPS4-209ENST00000466781 LINC00304Q8N9R0 145 aa5.88□□□□□ -1.47
HPS4-209ENST00000466781 DNAH10OSP0CZ25 163 aa5.87□□□□□ -1.47
HPS4-209ENST00000466781 FAM218AQ96MZ4 157 aa5.87□□□□□ -1.47
HPS4-209ENST00000466781 MRPL34Q9BQ48 92 aaKnown RBP5.87□□□□□ -1.47
HPS4-209ENST00000466781 CDIP1Q9H305 208 aa5.87□□□□□ -1.47
HPS4-209ENST00000466781 PTPN13Q12923 2485 aa5.87□□□□□ -1.47
HPS4-209ENST00000466781 A8MWP4 228 aa5.87□□□□□ -1.47
HPS4-209ENST00000466781 APLNQ9ULZ1 77 aa5.87□□□□□ -1.47
HPS4-209ENST00000466781 K7EIL1 84 aa5.87□□□□□ -1.47
HPS4-209ENST00000466781 KRTAP10-3P60369 221 aa5.87□□□□□ -1.47
HPS4-209ENST00000466781 KRTAP1-3Q8IUG1 177 aa5.86□□□□□ -1.47
HPS4-209ENST00000466781 FAM168BA1KXE4 195 aa5.86□□□□□ -1.47
HPS4-209ENST00000466781 TRBV7-4A0A0J9YYF1 115 aa5.86□□□□□ -1.47
HPS4-209ENST00000466781 C9orf92A6NGG3 77 aa5.85□□□□□ -1.47
HPS4-209ENST00000466781 CFAP47Q6ZTR5 3102 aa5.85□□□□□ -1.47
HPS4-209ENST00000466781 IGF2RP11717 2491 aa5.85□□□□□ -1.47
HPS4-209ENST00000466781 SSBP3-AS1Q7Z2R9 100 aa5.85□□□□□ -1.47
HPS4-209ENST00000466781 DSCR10P59022 87 aa5.85□□□□□ -1.47
HPS4-209ENST00000466781 ACACBO00763 2458 aa5.84□□□□□ -1.47
HPS4-209ENST00000466781 BSNQ9UPA5 3926 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms