RNA–Protein interactions for RNA: ENST00000466732.2

VPS13D-203, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 377 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-203ENST00000466732 IGHV7-4-1A0A0J9YVY3 117 aa1.91□□□□□ -2.1
VPS13D-203ENST00000466732 ETDCA0A1B0GVM5 59 aa1.91□□□□□ -2.1
VPS13D-203ENST00000466732 H0Y9P7 68 aa1.91□□□□□ -2.1
VPS13D-203ENST00000466732 H3BPC8 53 aa1.91□□□□□ -2.1
VPS13D-203ENST00000466732 P0C880 135 aa1.91□□□□□ -2.1
VPS13D-203ENST00000466732 CD52P31358 61 aa1.91□□□□□ -2.1
VPS13D-203ENST00000466732 POLR2KP53803 58 aaKnown RBP1.91□□□□□ -2.1
VPS13D-203ENST00000466732 SPINK7P58062 85 aa1.91□□□□□ -2.1
VPS13D-203ENST00000466732 PRR9Q5T870 116 aa1.91□□□□□ -2.1
VPS13D-203ENST00000466732 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.91□□□□□ -2.1
VPS13D-203ENST00000466732 Q6ZTI0 123 aa1.91□□□□□ -2.1
VPS13D-203ENST00000466732 Q8TAT8 98 aa1.91□□□□□ -2.1
VPS13D-203ENST00000466732 SMIM11BQ8TCY0 68 aa1.91□□□□□ -2.1
VPS13D-203ENST00000466732 GAFA1Q96PS6 74 aa1.91□□□□□ -2.1
VPS13D-203ENST00000466732 SDK1Q7Z5N4 2213 aa1.9□□□□□ -2.1
VPS13D-203ENST00000466732 SORL1Q92673 2214 aa1.9□□□□□ -2.1
VPS13D-203ENST00000466732 TRGV2A0A075B6R0 118 aa1.9□□□□□ -2.11
VPS13D-203ENST00000466732 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.9□□□□□ -2.11
VPS13D-203ENST00000466732 NTM-AS1Q6ZSK4 140 aa1.9□□□□□ -2.11
VPS13D-203ENST00000466732 RPL39LQ96EH5 51 aaKnown RBP1.9□□□□□ -2.11
VPS13D-203ENST00000466732 C20orf166-AS1Q96NR2 134 aa1.9□□□□□ -2.11
VPS13D-203ENST00000466732 FAM215AQ9Y5M1 114 aa1.9□□□□□ -2.11
VPS13D-203ENST00000466732 PTPRQQ9UMZ3 2332 aa1.9□□□□□ -2.11
VPS13D-203ENST00000466732 IGLV10-54A0A075B6I4 117 aa1.89□□□□□ -2.11
VPS13D-203ENST00000466732 IGLV1-50A0A075B6I6 118 aa1.89□□□□□ -2.11
VPS13D-203ENST00000466732 H3BRN7 92 aa1.89□□□□□ -2.11
VPS13D-203ENST00000466732 IGHV1-46P01743 117 aa1.89□□□□□ -2.11
VPS13D-203ENST00000466732 MGPP08493 103 aa1.89□□□□□ -2.11
VPS13D-203ENST00000466732 RPL39P62891 51 aaKnown RBP1.89□□□□□ -2.11
VPS13D-203ENST00000466732 KRTAP25-1Q3LHN0 102 aa1.89□□□□□ -2.11
VPS13D-203ENST00000466732 C1orf137Q5JT78 98 aa1.89□□□□□ -2.11
VPS13D-203ENST00000466732 SPATA8Q6RVD6 105 aa1.89□□□□□ -2.11
VPS13D-203ENST00000466732 COA5Q86WW8 74 aa1.89□□□□□ -2.11
VPS13D-203ENST00000466732 TMEM167AQ8TBQ9 72 aa1.89□□□□□ -2.11
VPS13D-203ENST00000466732 CHCHD7Q9BUK0 85 aa1.89□□□□□ -2.11
VPS13D-203ENST00000466732 KCNQ1DNQ9H478 68 aa1.89□□□□□ -2.11
VPS13D-203ENST00000466732 EP400Q96L91 3159 aa1.89□□□□□ -2.11
VPS13D-203ENST00000466732 URB1O60287 2271 aaKnown RBP1.88□□□□□ -2.11
VPS13D-203ENST00000466732 TRGV4A0A0C4DH28 118 aa1.88□□□□□ -2.11
VPS13D-203ENST00000466732 DEFB113Q30KQ7 82 aa1.88□□□□□ -2.11
VPS13D-203ENST00000466732 DEFB112Q30KQ8 113 aa1.88□□□□□ -2.11
VPS13D-203ENST00000466732 ZNRD1Q9P1U0 126 aa1.88□□□□□ -2.11
VPS13D-203ENST00000466732 MED13LQ71F56 2210 aa1.88□□□□□ -2.11
VPS13D-203ENST00000466732 ABCA4P78363 2273 aa1.88□□□□□ -2.11
VPS13D-203ENST00000466732 HIVEP2P31629 2446 aa1.88□□□□□ -2.11
VPS13D-203ENST00000466732 RTTNQ86VV8 2226 aa1.87□□□□□ -2.11
VPS13D-203ENST00000466732 IGKV2-40A0A087WW87 121 aaPredicted RBP1.87□□□□□ -2.11
VPS13D-203ENST00000466732 LINC00959A0A1B0GUT2 108 aa1.87□□□□□ -2.11
VPS13D-203ENST00000466732 IGKV2D-40P01614 121 aaPredicted RBP1.87□□□□□ -2.11
VPS13D-203ENST00000466732 CCL18P55774 89 aa1.87□□□□□ -2.11
VPS13D-203ENST00000466732 KRTAP13-1Q8IUC0 172 aa1.87□□□□□ -2.11
VPS13D-203ENST00000466732 DMAC1Q96GE9 116 aa1.87□□□□□ -2.11
VPS13D-203ENST00000466732 NAV3Q8IVL0 2385 aa1.87□□□□□ -2.11
VPS13D-203ENST00000466732 ZFHX3Q15911 3703 aa1.87□□□□□ -2.11
VPS13D-203ENST00000466732 NUPR2A6NF83 97 aa1.86□□□□□ -2.11
VPS13D-203ENST00000466732 ODF3BA8MYP8 253 aa1.86□□□□□ -2.11
VPS13D-203ENST00000466732 M0R2N4 97 aa1.86□□□□□ -2.11
VPS13D-203ENST00000466732 UQCR11O14957 56 aa1.86□□□□□ -2.11
VPS13D-203ENST00000466732 PRB1P04280 392 aa1.86□□□□□ -2.11
VPS13D-203ENST00000466732 RNASE3P12724 160 aaKnown RBP1.86□□□□□ -2.11
VPS13D-203ENST00000466732 COX7BP24311 80 aa1.86□□□□□ -2.11
VPS13D-203ENST00000466732 WT1-ASQ06250 92 aa1.86□□□□□ -2.11
VPS13D-203ENST00000466732 RPL39P5Q59GN2 51 aa1.86□□□□□ -2.11
VPS13D-203ENST00000466732 CIRBP-AS1Q8TBR5 109 aa1.86□□□□□ -2.11
VPS13D-203ENST00000466732 LEAP2Q969E1 77 aa1.86□□□□□ -2.11
VPS13D-203ENST00000466732 SPRR4Q96PI1 79 aa1.86□□□□□ -2.11
VPS13D-203ENST00000466732 CNTRLQ7Z7A1 2325 aa1.86□□□□□ -2.11
VPS13D-203ENST00000466732 ASCC3Q8N3C0 2202 aaKnown RBP1.85□□□□□ -2.11
VPS13D-203ENST00000466732 TRBV6-4A0A1B0GX49 114 aa1.85□□□□□ -2.11
VPS13D-203ENST00000466732 LINC00158P58513 81 aa1.85□□□□□ -2.11
VPS13D-203ENST00000466732 DEFB110Q30KQ9 67 aa1.85□□□□□ -2.11
VPS13D-203ENST00000466732 KRTAP26-1Q6PEX3 210 aa1.85□□□□□ -2.11
VPS13D-203ENST00000466732 C9orf163Q8N9P6 203 aa1.85□□□□□ -2.11
VPS13D-203ENST00000466732 ST20-AS1Q8NBB2 130 aa1.85□□□□□ -2.11
VPS13D-203ENST00000466732 CCL26Q9Y258 94 aa1.85□□□□□ -2.11
VPS13D-203ENST00000466732 IGKV3-7A0A075B6H7 116 aa1.84□□□□□ -2.11
VPS13D-203ENST00000466732 A8MUU9 505 aa1.84□□□□□ -2.11
VPS13D-203ENST00000466732 DEFB108AA8MXU0 73 aa1.84□□□□□ -2.11
VPS13D-203ENST00000466732 MRPL33O75394 65 aaKnown RBP1.84□□□□□ -2.11
VPS13D-203ENST00000466732 CCL3L1P16619 93 aa1.84□□□□□ -2.11
VPS13D-203ENST00000466732 PRB3Q04118 309 aaPredicted RBP1.84□□□□□ -2.11
VPS13D-203ENST00000466732 LINC00575Q6W349 94 aa1.84□□□□□ -2.11
VPS13D-203ENST00000466732 TMEM105Q8N8V8 129 aa1.84□□□□□ -2.11
VPS13D-203ENST00000466732 RNF5Q99942 180 aa1.84□□□□□ -2.11
VPS13D-203ENST00000466732 DOPEY2Q9Y3R5 2298 aa1.84□□□□□ -2.12
VPS13D-203ENST00000466732 I3L2K1 104 aa1.83□□□□□ -2.12
VPS13D-203ENST00000466732 DEFB132Q7Z7B7 95 aa1.83□□□□□ -2.12
VPS13D-203ENST00000466732 CDKN2A-AS1Q9UH64 79 aa1.83□□□□□ -2.12
VPS13D-203ENST00000466732 BRWD1Q9NSI6 2320 aa1.83□□□□□ -2.12
VPS13D-203ENST00000466732 GPR179Q6PRD1 2367 aa1.83□□□□□ -2.12
VPS13D-203ENST00000466732 A0A096LNT2 108 aa1.82□□□□□ -2.12
VPS13D-203ENST00000466732 IGKV3OR2-268A0A0C4DH90 116 aa1.82□□□□□ -2.12
VPS13D-203ENST00000466732 M0QY20 66 aa1.82□□□□□ -2.12
VPS13D-203ENST00000466732 Q6ZQY7 126 aa1.82□□□□□ -2.12
VPS13D-203ENST00000466732 LINC00304Q8N9R0 145 aa1.82□□□□□ -2.12
VPS13D-203ENST00000466732 MINOS1-NBL1R4GNA1 71 aa1.82□□□□□ -2.12
VPS13D-203ENST00000466732 TRIOBPQ9H2D6 2365 aa1.82□□□□□ -2.12
VPS13D-203ENST00000466732 GOLGB1Q14789 3259 aaKnown RBP1.82□□□□□ -2.12
VPS13D-203ENST00000466732 KNL1Q8NG31 2342 aa1.82□□□□□ -2.12
VPS13D-203ENST00000466732 PCNTO95613 3336 aa1.81□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms