RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 TRBV7-6A0A0J9YX20 115 aa5.45□□□□□ -1.54
USP54-210ENST00000466048 C1orf158Q8N1D5 194 aa5.45□□□□□ -1.54
USP54-210ENST00000466048 ATRQ13535 2644 aa5.45□□□□□ -1.54
USP54-210ENST00000466048 M0R2N4 97 aa5.45□□□□□ -1.54
USP54-210ENST00000466048 UTP20O75691 2785 aaKnown RBP5.45□□□□□ -1.54
USP54-210ENST00000466048 TRBV6-8A0A0A6YYG3 113 aa5.44□□□□□ -1.54
USP54-210ENST00000466048 A8MZ25 164 aa5.44□□□□□ -1.54
USP54-210ENST00000466048 SMCPP49901 116 aaPredicted RBP5.44□□□□□ -1.54
USP54-210ENST00000466048 UBE2D4Q9Y2X8 147 aa5.44□□□□□ -1.54
USP54-210ENST00000466048 MGAM2Q2M2H8 2515 aa5.44□□□□□ -1.54
USP54-210ENST00000466048 TEP1Q99973 2627 aaKnown RBP5.44□□□□□ -1.54
USP54-210ENST00000466048 H3BNG1 76 aa5.44□□□□□ -1.54
USP54-210ENST00000466048 SCXQ7RTU7 201 aa5.44□□□□□ -1.54
USP54-210ENST00000466048 TACC2O95359 2948 aa5.44□□□□□ -1.54
USP54-210ENST00000466048 COL12A1Q99715 3063 aa5.44□□□□□ -1.54
USP54-210ENST00000466048 A0A087WVE0 104 aa5.43□□□□□ -1.54
USP54-210ENST00000466048 TMEM254Q8TBM7 123 aa5.43□□□□□ -1.54
USP54-210ENST00000466048 SOSTDC1Q6X4U4 206 aa5.43□□□□□ -1.54
USP54-210ENST00000466048 Q6ZQY7 126 aa5.43□□□□□ -1.54
USP54-210ENST00000466048 MAST4O15021 2626 aa5.43□□□□□ -1.54
USP54-210ENST00000466048 CXCL6P80162 114 aa5.42□□□□□ -1.54
USP54-210ENST00000466048 LIMD2Q9BT23 127 aa5.42□□□□□ -1.54
USP54-210ENST00000466048 REG3AQ06141 175 aa5.42□□□□□ -1.54
USP54-210ENST00000466048 Q8N3U1 123 aa5.42□□□□□ -1.54
USP54-210ENST00000466048 SETXQ7Z333 2677 aaKnown RBP5.42□□□□□ -1.54
USP54-210ENST00000466048 VPREB1P12018 145 aa5.42□□□□□ -1.54
USP54-210ENST00000466048 CASC2Q6XLA1 102 aa5.42□□□□□ -1.54
USP54-210ENST00000466048 C19orf73Q9NVV2 129 aa5.42□□□□□ -1.54
USP54-210ENST00000466048 MUC4Q99102 2169 aa5.41□□□□□ -1.54
USP54-210ENST00000466048 FBN2P35556 2912 aa5.41□□□□□ -1.54
USP54-210ENST00000466048 C3orf84H3BNL1 204 aa5.41□□□□□ -1.54
USP54-210ENST00000466048 Q8N9L7 120 aa5.41□□□□□ -1.54
USP54-210ENST00000466048 DHRS4-AS1Q9P1J3 65 aa5.41□□□□□ -1.54
USP54-210ENST00000466048 APCP25054 2843 aa5.41□□□□□ -1.54
USP54-210ENST00000466048 PLAC8L1A1L4L8 177 aa5.41□□□□□ -1.54
USP54-210ENST00000466048 H0Y9J4 135 aa5.41□□□□□ -1.54
USP54-210ENST00000466048 AMELXQ99217 191 aa5.41□□□□□ -1.54
USP54-210ENST00000466048 UNC79Q9P2D8 2635 aa5.41□□□□□ -1.54
USP54-210ENST00000466048 F8WDY8 70 aa5.41□□□□□ -1.54
USP54-210ENST00000466048 EGFEM1PQ0D2K5 195 aa5.41□□□□□ -1.54
USP54-210ENST00000466048 Q8N814 137 aa5.41□□□□□ -1.54
USP54-210ENST00000466048 IGKV4-1P06312 121 aa5.41□□□□□ -1.54
USP54-210ENST00000466048 TSPEAR-AS2P59090 65 aa5.41□□□□□ -1.54
USP54-210ENST00000466048 KRTAP10-3P60369 221 aa5.4□□□□□ -1.54
USP54-210ENST00000466048 KRTAP21-3Q3LHN1 58 aa5.4□□□□□ -1.54
USP54-210ENST00000466048 Q8IZM0 81 aa5.4□□□□□ -1.54
USP54-210ENST00000466048 LINC00846Q9NV44 126 aa5.4□□□□□ -1.54
USP54-210ENST00000466048 WIPF1O43516 503 aa5.39□□□□□ -1.55
USP54-210ENST00000466048 Q6ZTC4 211 aa5.39□□□□□ -1.55
USP54-210ENST00000466048 C4orf26Q17RF5 130 aa5.39□□□□□ -1.55
USP54-210ENST00000466048 AGRNO00468 2067 aa5.39□□□□□ -1.55
USP54-210ENST00000466048 M0R378 163 aa5.39□□□□□ -1.55
USP54-210ENST00000466048 CSNK1G2-AS1Q8NCQ2 148 aa5.39□□□□□ -1.55
USP54-210ENST00000466048 LINC00474Q9P2X8 69 aa5.39□□□□□ -1.55
USP54-210ENST00000466048 CD164L2Q6UWJ8 174 aa5.39□□□□□ -1.55
USP54-210ENST00000466048 CHCHD10Q8WYQ3 142 aaPredicted RBP5.39□□□□□ -1.55
USP54-210ENST00000466048 MDFIQ99750 246 aa5.39□□□□□ -1.55
USP54-210ENST00000466048 hDV103S1A0JD37 113 aa5.38□□□□□ -1.55
USP54-210ENST00000466048 SMIM1B2RUZ4 78 aa5.38□□□□□ -1.55
USP54-210ENST00000466048 LINC00242Q5T6M2 205 aa5.38□□□□□ -1.55
USP54-210ENST00000466048 GIG44P09565 113 aaPredicted RBP5.38□□□□□ -1.55
USP54-210ENST00000466048 LINC00269Q8N2A0 174 aa5.38□□□□□ -1.55
USP54-210ENST00000466048 CELA1Q9UNI1 258 aa5.37□□□□□ -1.55
USP54-210ENST00000466048 C1orf134Q5TEV5 83 aa5.37□□□□□ -1.55
USP54-210ENST00000466048 Q6ZSN1 163 aa5.37□□□□□ -1.55
USP54-210ENST00000466048 C7orf33Q8WU49 177 aa5.37□□□□□ -1.55
USP54-210ENST00000466048 CDC42SE2Q9NRR3 84 aa5.37□□□□□ -1.55
USP54-210ENST00000466048 TEX15Q9BXT5 2789 aa5.37□□□□□ -1.55
USP54-210ENST00000466048 FHL2Q14192 279 aa5.37□□□□□ -1.55
USP54-210ENST00000466048 PRM2P04554 102 aa5.36□□□□□ -1.55
USP54-210ENST00000466048 Q6ZVQ6 151 aa5.36□□□□□ -1.55
USP54-210ENST00000466048 ADAMTSL4-AS1Q5T5F5 129 aa5.36□□□□□ -1.55
USP54-210ENST00000466048 FAM19A1Q7Z5A9 133 aa5.36□□□□□ -1.55
USP54-210ENST00000466048 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.36□□□□□ -1.55
USP54-210ENST00000466048 A0A1B0GW54 56 aa5.36□□□□□ -1.55
USP54-210ENST00000466048 ZNF73O43830 326 aaPredicted RBP5.36□□□□□ -1.55
USP54-210ENST00000466048 GCN1Q92616 2671 aaKnown RBP5.36□□□□□ -1.55
USP54-210ENST00000466048 LINC01547P58512 204 aaPredicted RBP5.36□□□□□ -1.55
USP54-210ENST00000466048 IGKV2-24A0A0C4DH68 120 aa5.35□□□□□ -1.55
USP54-210ENST00000466048 LINC01561Q8N1V8 128 aa5.35□□□□□ -1.55
USP54-210ENST00000466048 LINC00612Q8N6U2 182 aa5.35□□□□□ -1.55
USP54-210ENST00000466048 K7EIL1 84 aa5.35□□□□□ -1.55
USP54-210ENST00000466048 WFDC10BQ8IUB3 73 aa5.35□□□□□ -1.55
USP54-210ENST00000466048 A0A087WYN8 130 aa5.35□□□□□ -1.55
USP54-210ENST00000466048 LINC00959A0A1B0GUT2 108 aa5.35□□□□□ -1.55
USP54-210ENST00000466048 PSPHP1O15172 72 aa5.35□□□□□ -1.55
USP54-210ENST00000466048 SYCNQ0VAF6 134 aa5.35□□□□□ -1.55
USP54-210ENST00000466048 FAM30AQ9NZY2 134 aa5.35□□□□□ -1.55
USP54-210ENST00000466048 PDZD2O15018 2839 aa5.34□□□□□ -1.55
USP54-210ENST00000466048 A0A087WZ39 114 aa5.34□□□□□ -1.55
USP54-210ENST00000466048 PRR4Q16378 134 aa5.34□□□□□ -1.55
USP54-210ENST00000466048 X6R8D5 127 aa5.34□□□□□ -1.56
USP54-210ENST00000466048 A0A1B0GUV1 79 aa5.33□□□□□ -1.56
USP54-210ENST00000466048 ERC2-IT1O76042 136 aa5.33□□□□□ -1.56
USP54-210ENST00000466048 CD164Q04900 197 aa5.33□□□□□ -1.56
USP54-210ENST00000466048 LINC00208Q96KT6 92 aa5.33□□□□□ -1.56
USP54-210ENST00000466048 CELSR2Q9HCU4 2923 aa5.33□□□□□ -1.56
USP54-210ENST00000466048 WFDC13Q8IUB5 93 aa5.33□□□□□ -1.56
USP54-210ENST00000466048 TENM4Q6N022 2769 aa5.33□□□□□ -1.56
USP54-210ENST00000466048 CRYBG3Q68DQ2 2970 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 110.1 ms