RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 C15orf56Q8N910 161 aa7.75□□□□□ -1.17
USP54-209ENST00000464635 RAB37Q96AX2 223 aa7.75□□□□□ -1.17
USP54-209ENST00000464635 TRAV13-2A0A0B4J235 113 aa7.74□□□□□ -1.17
USP54-209ENST00000464635 A0A1W2PPM0 123 aa7.74□□□□□ -1.17
USP54-209ENST00000464635 FABP2P12104 132 aa7.74□□□□□ -1.17
USP54-209ENST00000464635 C2orf82Q6UX34 121 aa7.74□□□□□ -1.17
USP54-209ENST00000464635 H3BUT2 72 aa7.73□□□□□ -1.17
USP54-209ENST00000464635 TLX1NBP0CAT3 122 aa7.73□□□□□ -1.17
USP54-209ENST00000464635 UBE2V1Q13404 147 aa7.73□□□□□ -1.17
USP54-209ENST00000464635 SOSTDC1Q6X4U4 206 aa7.73□□□□□ -1.17
USP54-209ENST00000464635 GTF2H5Q6ZYL4 71 aa7.73□□□□□ -1.17
USP54-209ENST00000464635 TRBV20-1A0A075B6N2 111 aa7.72□□□□□ -1.17
USP54-209ENST00000464635 C14orf177Q52M58 125 aa7.72□□□□□ -1.17
USP54-209ENST00000464635 UNQ6190/PRO20217Q6UXQ8 127 aa7.72□□□□□ -1.17
USP54-209ENST00000464635 CAMK2N2Q96S95 79 aa7.72□□□□□ -1.17
USP54-209ENST00000464635 PGPEP1Q9NXJ5 209 aa7.72□□□□□ -1.17
USP54-209ENST00000464635 K7ERJ3 54 aa7.71□□□□□ -1.18
USP54-209ENST00000464635 EIF4EBP3O60516 100 aaPredicted RBP7.71□□□□□ -1.18
USP54-209ENST00000464635 TSPAN13O95857 204 aa7.71□□□□□ -1.18
USP54-209ENST00000464635 PFN2P35080 140 aa7.71□□□□□ -1.18
USP54-209ENST00000464635 VAMP3Q15836 100 aa7.71□□□□□ -1.18
USP54-209ENST00000464635 DAND5Q8N907 189 aa7.71□□□□□ -1.18
USP54-209ENST00000464635 SND1-IT1Q9HBX3 110 aa7.71□□□□□ -1.18
USP54-209ENST00000464635 GAGE10A6NGK3 116 aa7.7□□□□□ -1.18
USP54-209ENST00000464635 SYCNQ0VAF6 134 aa7.7□□□□□ -1.18
USP54-209ENST00000464635 Q9HAA7 133 aa7.7□□□□□ -1.18
USP54-209ENST00000464635 C6orf48Q9UBA6 75 aa7.7□□□□□ -1.18
USP54-209ENST00000464635 TRBV10-2A0A0K0K1G8 114 aa7.69□□□□□ -1.18
USP54-209ENST00000464635 NDUFC2-KCTD14E9PQ53 114 aa7.69□□□□□ -1.18
USP54-209ENST00000464635 K7EP34 96 aa7.69□□□□□ -1.18
USP54-209ENST00000464635 COX6CP09669 75 aa7.69□□□□□ -1.18
USP54-209ENST00000464635 C10orf25Q5T742 122 aa7.69□□□□□ -1.18
USP54-209ENST00000464635 A0A0U1RRA0 63 aa7.68□□□□□ -1.18
USP54-209ENST00000464635 USP17L23D6RBM5 183 aa7.68□□□□□ -1.18
USP54-209ENST00000464635 Q8N1X5 172 aa7.68□□□□□ -1.18
USP54-209ENST00000464635 A0A087WTM6 91 aa7.67□□□□□ -1.18
USP54-209ENST00000464635 CNBPP62633 177 aaKnown RBP7.67□□□□□ -1.18
USP54-209ENST00000464635 Q6ZRU5 148 aa7.67□□□□□ -1.18
USP54-209ENST00000464635 PKIGQ9Y2B9 76 aa7.67□□□□□ -1.18
USP54-209ENST00000464635 SPCS1Q9Y6A9 102 aa7.67□□□□□ -1.18
USP54-209ENST00000464635 IGKV2-28A0A075B6P5 120 aa7.66□□□□□ -1.18
USP54-209ENST00000464635 IGKV2D-28P01615 120 aa7.66□□□□□ -1.18
USP54-209ENST00000464635 RPL28P46779 137 aaKnown RBP7.66□□□□□ -1.18
USP54-209ENST00000464635 NPC2P61916 151 aa7.66□□□□□ -1.18
USP54-209ENST00000464635 HIGD2BQ4VC39 106 aa7.66□□□□□ -1.18
USP54-209ENST00000464635 PLA2G2DQ9UNK4 145 aa7.66□□□□□ -1.18
USP54-209ENST00000464635 CBY1Q9Y3M2 126 aa7.66□□□□□ -1.18
USP54-209ENST00000464635 KRTAP10-1P60331 282 aa7.65□□□□□ -1.18
USP54-209ENST00000464635 C9orf116Q5BN46 136 aaPredicted RBP7.65□□□□□ -1.18
USP54-209ENST00000464635 CARD19Q96LW7 228 aa7.65□□□□□ -1.18
USP54-209ENST00000464635 TMEM126AQ9H061 195 aa7.65□□□□□ -1.18
USP54-209ENST00000464635 RPL13AP40429 203 aaKnown RBP7.64□□□□□ -1.19
USP54-209ENST00000464635 LINC00337Q8N6G1 96 aa7.64□□□□□ -1.19
USP54-209ENST00000464635 FAT1Q14517 4588 aa7.63□□□□□ -1.19
USP54-209ENST00000464635 F8W1H4 67 aa7.63□□□□□ -1.19
USP54-209ENST00000464635 PSCAO43653 123 aa7.63□□□□□ -1.19
USP54-209ENST00000464635 SCGB1C2P0DMR2 95 aa7.63□□□□□ -1.19
USP54-209ENST00000464635 PSMB2P49721 201 aa7.63□□□□□ -1.19
USP54-209ENST00000464635 XGP55808 180 aa7.63□□□□□ -1.19
USP54-209ENST00000464635 Q1RN00 199 aa7.63□□□□□ -1.19
USP54-209ENST00000464635 LINC00526Q96FQ7 95 aa7.63□□□□□ -1.19
USP54-209ENST00000464635 LINC01600Q96MT4 127 aa7.63□□□□□ -1.19
USP54-209ENST00000464635 H0YGX0 51 aa7.62□□□□□ -1.19
USP54-209ENST00000464635 M0QXV9 152 aa7.62□□□□□ -1.19
USP54-209ENST00000464635 SLPIP03973 132 aa7.62□□□□□ -1.19
USP54-209ENST00000464635 LRCOL1A6NCL2 159 aa7.61□□□□□ -1.19
USP54-209ENST00000464635 TRIAP1O43715 76 aa7.61□□□□□ -1.19
USP54-209ENST00000464635 IGLV5-37A0A075B6J1 123 aa7.6□□□□□ -1.19
USP54-209ENST00000464635 LOC107984640A0A0U1RRK4 108 aa7.6□□□□□ -1.19
USP54-209ENST00000464635 A0A1B0GX51 115 aa7.6□□□□□ -1.19
USP54-209ENST00000464635 HAMPP81172 84 aa7.6□□□□□ -1.19
USP54-209ENST00000464635 ATXN8Q156A1 80 aa7.6□□□□□ -1.19
USP54-209ENST00000464635 Q6ZRP5 223 aa7.6□□□□□ -1.19
USP54-209ENST00000464635 NAA38Q9BRA0 125 aaKnown RBP7.6□□□□□ -1.19
USP54-209ENST00000464635 EPM2AB3EWF7 344 aa7.59□□□□□ -1.19
USP54-209ENST00000464635 IGLV6-57P01721 117 aa7.59□□□□□ -1.19
USP54-209ENST00000464635 M0R378 163 aa7.58□□□□□ -1.2
USP54-209ENST00000464635 LST1O00453 97 aa7.58□□□□□ -1.2
USP54-209ENST00000464635 TCL1BO95988 128 aa7.58□□□□□ -1.2
USP54-209ENST00000464635 VPREB1P12018 145 aa7.58□□□□□ -1.2
USP54-209ENST00000464635 WFDC2Q14508 124 aa7.58□□□□□ -1.2
USP54-209ENST00000464635 IGLV5-52A0A0A0MRZ9 124 aa7.57□□□□□ -1.2
USP54-209ENST00000464635 TRBV7-6A0A0J9YX20 115 aa7.57□□□□□ -1.2
USP54-209ENST00000464635 H3BMG7 143 aa7.57□□□□□ -1.2
USP54-209ENST00000464635 H7C2G1 150 aa7.57□□□□□ -1.2
USP54-209ENST00000464635 TRACP01848 142 aa7.57□□□□□ -1.2
USP54-209ENST00000464635 Q5VSD8 79 aa7.57□□□□□ -1.2
USP54-209ENST00000464635 C9orf163Q8N9P6 203 aa7.57□□□□□ -1.2
USP54-209ENST00000464635 SMIM11BQ8TCY0 68 aa7.57□□□□□ -1.2
USP54-209ENST00000464635 SMR3BP02814 79 aaPredicted RBP7.56□□□□□ -1.2
USP54-209ENST00000464635 S100A7L2Q5SY68 101 aa7.56□□□□□ -1.2
USP54-209ENST00000464635 Q8N814 137 aa7.56□□□□□ -1.2
USP54-209ENST00000464635 OR13C6PQ8NH95 151 aa7.56□□□□□ -1.2
USP54-209ENST00000464635 C9orf129Q5T035 196 aaKnown RBP7.55□□□□□ -1.2
USP54-209ENST00000464635 LINC00474Q9P2X8 69 aa7.55□□□□□ -1.2
USP54-209ENST00000464635 PRO0461Q9UI25 63 aa7.55□□□□□ -1.2
USP54-209ENST00000464635 DNAH8Q96JB1 4490 aa7.54□□□□□ -1.2
USP54-209ENST00000464635 LECT2O14960 151 aa7.54□□□□□ -1.2
USP54-209ENST00000464635 SNCGO76070 127 aa7.54□□□□□ -1.2
USP54-209ENST00000464635 Q8NDZ9 215 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms