RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 IGLV9-49A0A0B4J1Y8 123 aa9.27□□□□□ -0.92
USP40-208ENST00000450966 IGLV4-60A0A075B6I1 120 aa9.27□□□□□ -0.93
USP40-208ENST00000450966 A8MTW9 85 aa9.27□□□□□ -0.93
USP40-208ENST00000450966 CCDC168Q8NDH2 2452 aa9.26□□□□□ -0.93
USP40-208ENST00000450966 NCOR2Q9Y618 2525 aa9.25□□□□□ -0.93
USP40-208ENST00000450966 LINC00315P59091 139 aa9.25□□□□□ -0.93
USP40-208ENST00000450966 A0A1W2PPR1 153 aa9.25□□□□□ -0.93
USP40-208ENST00000450966 ODF3L2Q3SX64 289 aa9.25□□□□□ -0.93
USP40-208ENST00000450966 REG3GQ6UW15 175 aa9.24□□□□□ -0.93
USP40-208ENST00000450966 A0A1B0GUV1 79 aa9.24□□□□□ -0.93
USP40-208ENST00000450966 LINC01554Q52M75 96 aa9.24□□□□□ -0.93
USP40-208ENST00000450966 Q9BRP9 147 aa9.23□□□□□ -0.93
USP40-208ENST00000450966 KIAA0087Q14695 138 aa9.22□□□□□ -0.93
USP40-208ENST00000450966 Q6ZRU5 148 aa9.22□□□□□ -0.93
USP40-208ENST00000450966 C1orf134Q5TEV5 83 aa9.22□□□□□ -0.93
USP40-208ENST00000450966 Q8NBF4 154 aa9.22□□□□□ -0.93
USP40-208ENST00000450966 SPINK1P00995 79 aa9.21□□□□□ -0.93
USP40-208ENST00000450966 IGLV5-52A0A0A0MRZ9 124 aa9.2□□□□□ -0.94
USP40-208ENST00000450966 DOPEY1Q5JWR5 2465 aa9.2□□□□□ -0.94
USP40-208ENST00000450966 MIR22HGQ0VDD5 57 aa9.2□□□□□ -0.94
USP40-208ENST00000450966 ABCA2Q9BZC7 2435 aa9.19□□□□□ -0.94
USP40-208ENST00000450966 IGHV3OR16-9A0A0B4J2B5 98 aa9.19□□□□□ -0.94
USP40-208ENST00000450966 Q6ZSN1 163 aa9.18□□□□□ -0.94
USP40-208ENST00000450966 COL4A2P08572 1712 aa9.18□□□□□ -0.94
USP40-208ENST00000450966 SSBP3-AS1Q7Z2R9 100 aa9.17□□□□□ -0.94
USP40-208ENST00000450966 SPANXA2-OT1Q8N9U9 137 aa9.17□□□□□ -0.94
USP40-208ENST00000450966 FP248Q71RG6 208 aaPredicted RBP9.16□□□□□ -0.94
USP40-208ENST00000450966 TRBV7-4A0A0J9YYF1 115 aa9.15□□□□□ -0.95
USP40-208ENST00000450966 CIRBP-AS1Q8TBR5 109 aa9.15□□□□□ -0.95
USP40-208ENST00000450966 C2CD3Q4AC94 2353 aa9.13□□□□□ -0.95
USP40-208ENST00000450966 PTPRBP23467 1997 aa9.12□□□□□ -0.95
USP40-208ENST00000450966 IGF2RP11717 2491 aa9.12□□□□□ -0.95
USP40-208ENST00000450966 LINC01556Q5JQF7 62 aa9.1□□□□□ -0.95
USP40-208ENST00000450966 LYPD5Q6UWN5 251 aa9.1□□□□□ -0.95
USP40-208ENST00000450966 Q75L30 129 aa9.1□□□□□ -0.95
USP40-208ENST00000450966 H3BNG1 76 aa9.09□□□□□ -0.95
USP40-208ENST00000450966 PRLHP81277 87 aa9.09□□□□□ -0.95
USP40-208ENST00000450966 KRTAP24-1Q3LI83 254 aa9.09□□□□□ -0.95
USP40-208ENST00000450966 EP400Q96L91 3159 aa9.08□□□□□ -0.96
USP40-208ENST00000450966 K7EQZ3 153 aa9.08□□□□□ -0.96
USP40-208ENST00000450966 MOBPQ13875 183 aa9.07□□□□□ -0.96
USP40-208ENST00000450966 OBSCN-AS1Q96MR7 158 aa9.07□□□□□ -0.96
USP40-208ENST00000450966 WWC2-AS2Q96NR7 200 aa9.06□□□□□ -0.96
USP40-208ENST00000450966 A8MWP4 228 aa9.06□□□□□ -0.96
USP40-208ENST00000450966 MYO9AB2RTY4 2548 aa9.05□□□□□ -0.96
USP40-208ENST00000450966 LINC00588Q9Y4M8 146 aa9.04□□□□□ -0.96
USP40-208ENST00000450966 X6R8D5 127 aa9.04□□□□□ -0.96
USP40-208ENST00000450966 RAI1Q7Z5J4 1906 aaPredicted RBP9.04□□□□□ -0.96
USP40-208ENST00000450966 IGLV8-61A0A075B6I0 122 aa9.03□□□□□ -0.96
USP40-208ENST00000450966 LINC00476Q8WZB0 136 aa9.03□□□□□ -0.96
USP40-208ENST00000450966 LINC00167Q96N53 147 aa9.03□□□□□ -0.96
USP40-208ENST00000450966 CPAMD8Q8IZJ3 1885 aa9.03□□□□□ -0.96
USP40-208ENST00000450966 EIF4EBP3O60516 100 aaPredicted RBP9.02□□□□□ -0.97
USP40-208ENST00000450966 IGLV6-57P01721 117 aa9.02□□□□□ -0.97
USP40-208ENST00000450966 OXTP01178 125 aa9.01□□□□□ -0.97
USP40-208ENST00000450966 CYSTM1Q9H1C7 97 aa9.01□□□□□ -0.97
USP40-208ENST00000450966 CRIPTQ9P021 101 aa9.01□□□□□ -0.97
USP40-208ENST00000450966 PIEZO2Q9H5I5 2752 aa9.01□□□□□ -0.97
USP40-208ENST00000450966 IGKV2D-30A0A075B6S6 120 aa9.01□□□□□ -0.97
USP40-208ENST00000450966 IGKV2-30P06310 120 aa9.01□□□□□ -0.97
USP40-208ENST00000450966 OCR1Q9BZK8 76 aa9□□□□□ -0.97
USP40-208ENST00000450966 Q6ZRX8 168 aa9□□□□□ -0.97
USP40-208ENST00000450966 FAM229BQ4G0N7 80 aa8.99□□□□□ -0.97
USP40-208ENST00000450966 Q6ZRP5 223 aa8.99□□□□□ -0.97
USP40-208ENST00000450966 TET2Q6N021 2002 aaPredicted RBP8.99□□□□□ -0.97
USP40-208ENST00000450966 C22orf24Q9Y442 160 aa8.97□□□□□ -0.97
USP40-208ENST00000450966 JMJD1CQ15652 2540 aa8.97□□□□□ -0.97
USP40-208ENST00000450966 C9orf129Q5T035 196 aaKnown RBP8.97□□□□□ -0.97
USP40-208ENST00000450966 EPM2AB3EWF7 344 aa8.96□□□□□ -0.97
USP40-208ENST00000450966 RPL37AP61513 92 aaKnown RBP8.96□□□□□ -0.97
USP40-208ENST00000450966 CHD8Q9HCK8 2581 aa8.96□□□□□ -0.97
USP40-208ENST00000450966 LINC00313P59037 77 aa8.96□□□□□ -0.98
USP40-208ENST00000450966 FAM229AH3BQW9 127 aa8.95□□□□□ -0.98
USP40-208ENST00000450966 C16orf90A8MZG2 172 aa8.95□□□□□ -0.98
USP40-208ENST00000450966 GVQW2A0A096LPI5 108 aaPredicted RBP8.93□□□□□ -0.98
USP40-208ENST00000450966 Q8N9P0 234 aaPredicted RBP8.93□□□□□ -0.98
USP40-208ENST00000450966 Q5VV11 94 aa8.92□□□□□ -0.98
USP40-208ENST00000450966 PHF5AQ7RTV0 110 aaKnown RBP8.92□□□□□ -0.98
USP40-208ENST00000450966 TLN1Q9Y490 2541 aaKnown RBP8.92□□□□□ -0.98
USP40-208ENST00000450966 MRPL34Q9BQ48 92 aaKnown RBP8.92□□□□□ -0.98
USP40-208ENST00000450966 KLK9Q2XQG4 91 aa8.91□□□□□ -0.98
USP40-208ENST00000450966 ST20-AS1Q8NBB2 130 aa8.91□□□□□ -0.98
USP40-208ENST00000450966 PRAC1Q96KF2 57 aa8.91□□□□□ -0.98
USP40-208ENST00000450966 LINC01558Q9Y6Z2 57 aa8.91□□□□□ -0.98
USP40-208ENST00000450966 ZFYVE26Q68DK2 2539 aa8.9□□□□□ -0.98
USP40-208ENST00000450966 LINC00528Q8N1L1 170 aa8.89□□□□□ -0.99
USP40-208ENST00000450966 ABCA12Q86UK0 2595 aa8.88□□□□□ -0.99
USP40-208ENST00000450966 KCNQ1DNQ9H478 68 aa8.87□□□□□ -0.99
USP40-208ENST00000450966 NBDYA0A0U1RRE5 68 aa8.86□□□□□ -0.99
USP40-208ENST00000450966 ASB16-AS1Q495Z4 193 aa8.85□□□□□ -0.99
USP40-208ENST00000450966 LRRK2Q5S007 2527 aa8.85□□□□□ -0.99
USP40-208ENST00000450966 PLA2G1BP04054 148 aaKnown RBP8.85□□□□□ -0.99
USP40-208ENST00000450966 IGLV7-46A0A075B6I9 117 aa8.82□□□□□ -1
USP40-208ENST00000450966 SPACA4Q8TDM5 124 aa8.82□□□□□ -1
USP40-208ENST00000450966 FN1P02751 2386 aaKnown RBP8.82□□□□□ -1
USP40-208ENST00000450966 C8orf17Q9NRJ1 99 aa8.81□□□□□ -1
USP40-208ENST00000450966 DMAC1Q96GE9 116 aa8.8□□□□□ -1
USP40-208ENST00000450966 LUZP6Q538Z0 58 aa8.8□□□□□ -1
USP40-208ENST00000450966 CSAG1Q6PB30 78 aa8.79□□□□□ -1
USP40-208ENST00000450966 Q8NAQ8 132 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms