RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 FAM208BQ5VWN6 2430 aa1.55□□□□□ -2.16
CCDC88A-206ENST00000430086 MROH1Q8NDA8 1641 aa1.55□□□□□ -2.16
CCDC88A-206ENST00000430086 SPTY2D1-AS1A0A0U1RR47 76 aa1.54□□□□□ -2.16
CCDC88A-206ENST00000430086 IFI6P09912 130 aa1.54□□□□□ -2.16
CCDC88A-206ENST00000430086 MAGI3Q5TCQ9 1506 aa1.54□□□□□ -2.16
CCDC88A-206ENST00000430086 A0A087WWC5 75 aa1.53□□□□□ -2.16
CCDC88A-206ENST00000430086 I3L2K1 104 aa1.53□□□□□ -2.16
CCDC88A-206ENST00000430086 COX8AP10176 69 aa1.53□□□□□ -2.16
CCDC88A-206ENST00000430086 FAM103A1Q9BTL3 118 aaKnown RBP1.53□□□□□ -2.16
CCDC88A-206ENST00000430086 ASH1LQ9NR48 2969 aaKnown RBP1.53□□□□□ -2.16
CCDC88A-206ENST00000430086 CRIPTQ9P021 101 aa1.53□□□□□ -2.16
CCDC88A-206ENST00000430086 GNG13Q9P2W3 67 aa1.53□□□□□ -2.16
CCDC88A-206ENST00000430086 ANKRD17O75179 2603 aaKnown RBP1.53□□□□□ -2.17
CCDC88A-206ENST00000430086 ANKRD50Q9ULJ7 1429 aa1.52□□□□□ -2.17
CCDC88A-206ENST00000430086 NREPQ16612 68 aa1.52□□□□□ -2.17
CCDC88A-206ENST00000430086 Q8IZM0 81 aa1.52□□□□□ -2.17
CCDC88A-206ENST00000430086 LAMC1P11047 1609 aa1.51□□□□□ -2.17
CCDC88A-206ENST00000430086 FXYD6-FXYD2A0A087WZ82 144 aa1.51□□□□□ -2.17
CCDC88A-206ENST00000430086 DEFB123Q8N688 67 aa1.51□□□□□ -2.17
CCDC88A-206ENST00000430086 PAPPAQ13219 1627 aa1.51□□□□□ -2.17
CCDC88A-206ENST00000430086 INO80Q9ULG1 1556 aaPredicted RBP1.51□□□□□ -2.17
CCDC88A-206ENST00000430086 SLIT1O75093 1534 aa1.5□□□□□ -2.17
CCDC88A-206ENST00000430086 ATXN8Q156A1 80 aa1.5□□□□□ -2.17
CCDC88A-206ENST00000430086 CD163L1Q9NR16 1453 aa1.5□□□□□ -2.17
CCDC88A-206ENST00000430086 RGPD1P0DJD0 1748 aa1.49□□□□□ -2.17
CCDC88A-206ENST00000430086 USP32Q8NFA0 1604 aa1.49□□□□□ -2.17
CCDC88A-206ENST00000430086 I3L3M4 83 aa1.49□□□□□ -2.17
CCDC88A-206ENST00000430086 HILPDAQ9Y5L2 63 aa1.49□□□□□ -2.17
CCDC88A-206ENST00000430086 UBR3Q6ZT12 1888 aa1.49□□□□□ -2.17
CCDC88A-206ENST00000430086 ASXL1Q8IXJ9 1541 aa1.49□□□□□ -2.17
CCDC88A-206ENST00000430086 ARFGEF2Q9Y6D5 1785 aa1.47□□□□□ -2.17
CCDC88A-206ENST00000430086 LMTK2Q8IWU2 1503 aa1.47□□□□□ -2.17
CCDC88A-206ENST00000430086 CPSF4LA6NMK7 179 aaKnown RBP1.46□□□□□ -2.18
CCDC88A-206ENST00000430086 K7EQZ3 153 aa1.46□□□□□ -2.18
CCDC88A-206ENST00000430086 MADDQ8WXG6 1647 aa1.45□□□□□ -2.18
CCDC88A-206ENST00000430086 LCE6AA0A183 80 aa1.45□□□□□ -2.18
CCDC88A-206ENST00000430086 COX6B1P14854 86 aa1.45□□□□□ -2.18
CCDC88A-206ENST00000430086 QSER1Q2KHR3 1735 aa1.44□□□□□ -2.18
CCDC88A-206ENST00000430086 CDC42BPGQ6DT37 1551 aa1.44□□□□□ -2.18
CCDC88A-206ENST00000430086 CFAP43Q8NDM7 1665 aa1.44□□□□□ -2.18
CCDC88A-206ENST00000430086 URB1O60287 2271 aaKnown RBP1.43□□□□□ -2.18
CCDC88A-206ENST00000430086 POLR1AO95602 1720 aaPredicted RBP1.43□□□□□ -2.18
CCDC88A-206ENST00000430086 PLCH1Q4KWH8 1693 aa1.42□□□□□ -2.18
CCDC88A-206ENST00000430086 ABCA9Q8IUA7 1624 aa1.42□□□□□ -2.18
CCDC88A-206ENST00000430086 NDUFA4O00483 81 aa1.42□□□□□ -2.18
CCDC88A-206ENST00000430086 CCL22O00626 93 aa1.42□□□□□ -2.18
CCDC88A-206ENST00000430086 SMIM5Q71RC9 77 aa1.42□□□□□ -2.18
CCDC88A-206ENST00000430086 ZNF831Q5JPB2 1677 aa1.42□□□□□ -2.18
CCDC88A-206ENST00000430086 COL14A1Q05707 1796 aaKnown RBP1.42□□□□□ -2.18
CCDC88A-206ENST00000430086 TIAM2Q8IVF5 1701 aa1.4□□□□□ -2.18
CCDC88A-206ENST00000430086 RALGAPBQ86X10 1494 aa1.4□□□□□ -2.19
CCDC88A-206ENST00000430086 C3orf79P0CE67 100 aa1.4□□□□□ -2.19
CCDC88A-206ENST00000430086 ZNF462Q96JM2 2506 aa1.4□□□□□ -2.19
CCDC88A-206ENST00000430086 CICQ96RK0 1608 aaPredicted RBP1.4□□□□□ -2.19
CCDC88A-206ENST00000430086 CCDC180Q9P1Z9 1646 aa1.4□□□□□ -2.19
CCDC88A-206ENST00000430086 EIF2AK4Q9P2K8 1649 aaKnown RBP1.4□□□□□ -2.19
CCDC88A-206ENST00000430086 SFTA3P0C7M3 94 aa1.39□□□□□ -2.19
CCDC88A-206ENST00000430086 Q5VSD8 79 aa1.39□□□□□ -2.19
CCDC88A-206ENST00000430086 MRPL34Q9BQ48 92 aaKnown RBP1.39□□□□□ -2.19
CCDC88A-206ENST00000430086 ITSN1Q15811 1721 aa1.39□□□□□ -2.19
CCDC88A-206ENST00000430086 NHSQ6T4R5 1651 aa1.39□□□□□ -2.19
CCDC88A-206ENST00000430086 BIVM-ERCC5R4GMW8 1640 aa1.38□□□□□ -2.19
CCDC88A-206ENST00000430086 UBL5Q9BZL1 73 aa1.38□□□□□ -2.19
CCDC88A-206ENST00000430086 CACNA1EQ15878 2313 aa1.38□□□□□ -2.19
CCDC88A-206ENST00000430086 DIP2AQ14689 1571 aa1.38□□□□□ -2.19
CCDC88A-206ENST00000430086 BCORQ6W2J9 1755 aa1.37□□□□□ -2.19
CCDC88A-206ENST00000430086 TIAM1Q13009 1591 aa1.37□□□□□ -2.19
CCDC88A-206ENST00000430086 NWD1Q149M9 1564 aa1.37□□□□□ -2.19
CCDC88A-206ENST00000430086 DOT1LQ8TEK3 1739 aa1.37□□□□□ -2.19
CCDC88A-206ENST00000430086 DOPEY2Q9Y3R5 2298 aa1.36□□□□□ -2.19
CCDC88A-206ENST00000430086 PRB3Q04118 309 aaPredicted RBP1.36□□□□□ -2.19
CCDC88A-206ENST00000430086 ENHOQ6UWT2 76 aa1.36□□□□□ -2.19
CCDC88A-206ENST00000430086 COX6B2Q6YFQ2 88 aa1.36□□□□□ -2.19
CCDC88A-206ENST00000430086 CACNA1HO95180 2353 aa1.36□□□□□ -2.19
CCDC88A-206ENST00000430086 WIZO95785 1651 aa1.35□□□□□ -2.19
CCDC88A-206ENST00000430086 PLCE1Q9P212 2302 aa1.35□□□□□ -2.19
CCDC88A-206ENST00000430086 PREX1Q8TCU6 1659 aa1.35□□□□□ -2.19
CCDC88A-206ENST00000430086 MRPL33O75394 65 aaKnown RBP1.34□□□□□ -2.19
CCDC88A-206ENST00000430086 SPTBN2O15020 2390 aa1.33□□□□□ -2.2
CCDC88A-206ENST00000430086 RICTORQ6R327 1708 aa1.33□□□□□ -2.2
CCDC88A-206ENST00000430086 FMN2Q9NZ56 1722 aa1.33□□□□□ -2.2
CCDC88A-206ENST00000430086 PARP4Q9UKK3 1724 aaKnown RBP1.32□□□□□ -2.2
CCDC88A-206ENST00000430086 C2CD3Q4AC94 2353 aa1.32□□□□□ -2.2
CCDC88A-206ENST00000430086 TTC28Q96AY4 2481 aa1.31□□□□□ -2.2
CCDC88A-206ENST00000430086 LINC01549A6NIU2 74 aa1.31□□□□□ -2.2
CCDC88A-206ENST00000430086 SPRR1AP35321 89 aa1.31□□□□□ -2.2
CCDC88A-206ENST00000430086 EEA1Q15075 1411 aa1.31□□□□□ -2.2
CCDC88A-206ENST00000430086 PIEZO2Q9H5I5 2752 aa1.3□□□□□ -2.2
CCDC88A-206ENST00000430086 SPRR1BP22528 89 aa1.3□□□□□ -2.2
CCDC88A-206ENST00000430086 DEFB105AQ8NG35 78 aa1.3□□□□□ -2.2
CCDC88A-206ENST00000430086 FXYD6Q9H0Q3 95 aa1.3□□□□□ -2.2
CCDC88A-206ENST00000430086 CDKN2A-AS1Q9UH64 79 aa1.3□□□□□ -2.2
CCDC88A-206ENST00000430086 TSC2P49815 1807 aa1.3□□□□□ -2.2
CCDC88A-206ENST00000430086 SPINK4O60575 86 aa1.29□□□□□ -2.2
CCDC88A-206ENST00000430086 KCNQ1DNQ9H478 68 aa1.29□□□□□ -2.2
CCDC88A-206ENST00000430086 APLNQ9ULZ1 77 aa1.29□□□□□ -2.2
CCDC88A-206ENST00000430086 NESP48681 1621 aa1.28□□□□□ -2.2
CCDC88A-206ENST00000430086 USF3Q68DE3 2245 aa1.28□□□□□ -2.2
CCDC88A-206ENST00000430086 PTPRZ1P23471 2315 aaPredicted RBP1.28□□□□□ -2.2
CCDC88A-206ENST00000430086 PTPRQQ9UMZ3 2332 aa1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms