RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 WFDC11Q8NEX6 87 aa7.25□□□□□ -1.25
USP54-204ENST00000422491 FLNCQ14315 2725 aa7.24□□□□□ -1.25
USP54-204ENST00000422491 C10orf25Q5T742 122 aa7.24□□□□□ -1.25
USP54-204ENST00000422491 LINC01006Q8NI28 216 aa7.24□□□□□ -1.25
USP54-204ENST00000422491 C1orf43Q9BWL3 253 aa7.24□□□□□ -1.25
USP54-204ENST00000422491 UTP20O75691 2785 aaKnown RBP7.24□□□□□ -1.25
USP54-204ENST00000422491 A0A096LPF7 62 aa7.24□□□□□ -1.25
USP54-204ENST00000422491 NREPQ16612 68 aa7.24□□□□□ -1.25
USP54-204ENST00000422491 POLQO75417 2590 aa7.23□□□□□ -1.25
USP54-204ENST00000422491 UNQ6190/PRO20217Q6UXQ8 127 aa7.23□□□□□ -1.25
USP54-204ENST00000422491 TMEM254Q8TBM7 123 aa7.23□□□□□ -1.25
USP54-204ENST00000422491 TEX15Q9BXT5 2789 aa7.23□□□□□ -1.25
USP54-204ENST00000422491 ERC2-IT1O76042 136 aa7.22□□□□□ -1.25
USP54-204ENST00000422491 REG3AQ06141 175 aa7.22□□□□□ -1.25
USP54-204ENST00000422491 BBC3Q96PG8 261 aaPredicted RBP7.22□□□□□ -1.25
USP54-204ENST00000422491 BPY2O14599 106 aa7.21□□□□□ -1.25
USP54-204ENST00000422491 IGLV1-51P01701 117 aa7.21□□□□□ -1.25
USP54-204ENST00000422491 A0A0J9YWU9 116 aa7.21□□□□□ -1.26
USP54-204ENST00000422491 IGHV4-30-4P0DP06 118 aa7.21□□□□□ -1.26
USP54-204ENST00000422491 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.21□□□□□ -1.26
USP54-204ENST00000422491 PRO0255Q9UI72 69 aa7.21□□□□□ -1.26
USP54-204ENST00000422491 ANGP03950 147 aaKnown RBP7.2□□□□□ -1.26
USP54-204ENST00000422491 SPAG11BQ08648 103 aa7.2□□□□□ -1.26
USP54-204ENST00000422491 FAM229BQ4G0N7 80 aa7.2□□□□□ -1.26
USP54-204ENST00000422491 DIRC1Q969H9 104 aa7.2□□□□□ -1.26
USP54-204ENST00000422491 PKIGQ9Y2B9 76 aa7.2□□□□□ -1.26
USP54-204ENST00000422491 CYSRT1A8MQ03 144 aa7.19□□□□□ -1.26
USP54-204ENST00000422491 ZNF469Q96JG9 3925 aaPredicted RBP7.18□□□□□ -1.26
USP54-204ENST00000422491 A0A0U1RQV1 116 aa7.18□□□□□ -1.26
USP54-204ENST00000422491 COX7BP24311 80 aa7.18□□□□□ -1.26
USP54-204ENST00000422491 ELOF1P60002 83 aaKnown RBP7.18□□□□□ -1.26
USP54-204ENST00000422491 OCR1Q9BZK8 76 aa7.18□□□□□ -1.26
USP54-204ENST00000422491 FN1P02751 2386 aaKnown RBP7.18□□□□□ -1.26
USP54-204ENST00000422491 NF1P21359 2839 aa7.17□□□□□ -1.26
USP54-204ENST00000422491 ZNF73O43830 326 aaPredicted RBP7.17□□□□□ -1.26
USP54-204ENST00000422491 IGKV4-1P06312 121 aa7.17□□□□□ -1.26
USP54-204ENST00000422491 Q8N9L7 120 aa7.17□□□□□ -1.26
USP54-204ENST00000422491 BRK1Q8WUW1 75 aa7.17□□□□□ -1.26
USP54-204ENST00000422491 DNAJC9-AS1A6NH13 148 aa7.17□□□□□ -1.26
USP54-204ENST00000422491 LRRK2Q5S007 2527 aa7.17□□□□□ -1.26
USP54-204ENST00000422491 PRYO14603 147 aa7.16□□□□□ -1.26
USP54-204ENST00000422491 PTPN13Q12923 2485 aa7.16□□□□□ -1.26
USP54-204ENST00000422491 GVQW2A0A096LPI5 108 aaPredicted RBP7.16□□□□□ -1.26
USP54-204ENST00000422491 X6R8D5 127 aa7.16□□□□□ -1.26
USP54-204ENST00000422491 Q6ZTC4 211 aa7.14□□□□□ -1.27
USP54-204ENST00000422491 XAGE1AQ9HD64 81 aa7.14□□□□□ -1.27
USP54-204ENST00000422491 APCP25054 2843 aa7.14□□□□□ -1.27
USP54-204ENST00000422491 NAV2Q8IVL1 2488 aa7.14□□□□□ -1.27
USP54-204ENST00000422491 PRB1P04280 392 aa7.14□□□□□ -1.27
USP54-204ENST00000422491 MPLKIPQ8TAP9 179 aa7.14□□□□□ -1.27
USP54-204ENST00000422491 ESM1Q9NQ30 184 aa7.14□□□□□ -1.27
USP54-204ENST00000422491 C6orf48Q9UBA6 75 aa7.14□□□□□ -1.27
USP54-204ENST00000422491 CELA1Q9UNI1 258 aa7.14□□□□□ -1.27
USP54-204ENST00000422491 ZNF462Q96JM2 2506 aa7.14□□□□□ -1.27
USP54-204ENST00000422491 MYO18BQ8IUG5 2567 aa7.13□□□□□ -1.27
USP54-204ENST00000422491 F8WDY8 70 aa7.13□□□□□ -1.27
USP54-204ENST00000422491 ESRGQ1W209 222 aa7.13□□□□□ -1.27
USP54-204ENST00000422491 CENPEQ02224 2701 aa7.13□□□□□ -1.27
USP54-204ENST00000422491 FUSP35637 526 aaKnown RBP eCLIP7.13□□□□□ -1.27
USP54-204ENST00000422491 SONP18583 2426 aaKnown RBP7.12□□□□□ -1.27
USP54-204ENST00000422491 SETD2Q9BYW2 2564 aaPredicted RBP7.12□□□□□ -1.27
USP54-204ENST00000422491 NBEAL2Q6ZNJ1 2754 aa7.12□□□□□ -1.27
USP54-204ENST00000422491 VPREB1P12018 145 aa7.11□□□□□ -1.27
USP54-204ENST00000422491 KRTAP10-9P60411 292 aa7.11□□□□□ -1.27
USP54-204ENST00000422491 LINC00528Q8N1L1 170 aa7.11□□□□□ -1.27
USP54-204ENST00000422491 PRR34Q9NV39 138 aa7.11□□□□□ -1.27
USP54-204ENST00000422491 HIGD2AQ9BW72 106 aa7.11□□□□□ -1.27
USP54-204ENST00000422491 GCN1Q92616 2671 aaKnown RBP7.1□□□□□ -1.27
USP54-204ENST00000422491 LYRM9A8MSI8 78 aa7.1□□□□□ -1.27
USP54-204ENST00000422491 C1orf195Q5TG92 126 aa7.1□□□□□ -1.27
USP54-204ENST00000422491 DEFB113Q30KQ7 82 aa7.09□□□□□ -1.27
USP54-204ENST00000422491 KLK12Q9UKR0 248 aa7.08□□□□□ -1.28
USP54-204ENST00000422491 KRTAP1-3Q8IUG1 177 aa7.08□□□□□ -1.28
USP54-204ENST00000422491 ABCA12Q86UK0 2595 aa7.08□□□□□ -1.28
USP54-204ENST00000422491 C3orf84H3BNL1 204 aa7.08□□□□□ -1.28
USP54-204ENST00000422491 M0R378 163 aa7.07□□□□□ -1.28
USP54-204ENST00000422491 DEFB4AO15263 64 aa7.07□□□□□ -1.28
USP54-204ENST00000422491 HIGD2BQ4VC39 106 aa7.07□□□□□ -1.28
USP54-204ENST00000422491 LELP1Q5T871 98 aa7.07□□□□□ -1.28
USP54-204ENST00000422491 FAM208BQ5VWN6 2430 aa7.07□□□□□ -1.28
USP54-204ENST00000422491 LCE6AA0A183 80 aa7.07□□□□□ -1.28
USP54-204ENST00000422491 DAD1P61803 113 aa7.07□□□□□ -1.28
USP54-204ENST00000422491 hDV103S1A0JD37 113 aa7.06□□□□□ -1.28
USP54-204ENST00000422491 SMIM29Q86T20 159 aa7.05□□□□□ -1.28
USP54-204ENST00000422491 V9GYY9 64 aa7.05□□□□□ -1.28
USP54-204ENST00000422491 ANK3Q12955 4377 aaKnown RBP7.05□□□□□ -1.28
USP54-204ENST00000422491 FAM30AQ9NZY2 134 aa7.04□□□□□ -1.28
USP54-204ENST00000422491 IGLV5-48A0A075B6I7 105 aa7.03□□□□□ -1.28
USP54-204ENST00000422491 ITPR3Q14573 2671 aa7.03□□□□□ -1.28
USP54-204ENST00000422491 EGFEM1PQ0D2K5 195 aa7.03□□□□□ -1.28
USP54-204ENST00000422491 CAMK2N2Q96S95 79 aa7.03□□□□□ -1.28
USP54-204ENST00000422491 KMT2BQ9UMN6 2715 aaPredicted RBP7.03□□□□□ -1.28
USP54-204ENST00000422491 DEFB135Q30KP9 77 aa7.03□□□□□ -1.28
USP54-204ENST00000422491 Q8N377 158 aa7.03□□□□□ -1.28
USP54-204ENST00000422491 KPRPQ5T749 579 aaPredicted RBP7.02□□□□□ -1.29
USP54-204ENST00000422491 Q6ZRP5 223 aa7.02□□□□□ -1.29
USP54-204ENST00000422491 Q6ZRU5 148 aa7.02□□□□□ -1.29
USP54-204ENST00000422491 ZCCHC13Q8WW36 166 aaKnown RBP7.02□□□□□ -1.29
USP54-204ENST00000422491 UBR5O95071 2799 aaPredicted RBP7.01□□□□□ -1.29
USP54-204ENST00000422491 Q1T7F1 81 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms