RNA–Protein interactions for RNA: ENST00000416538.5

UBXN4-203, Transcript of UBX domain protein 4, humanhuman

TSL 5

Gene UBXN4, Length 1,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-203ENST00000416538 PFN2P35080 140 aa8.92□□□□□ -0.98
UBXN4-203ENST00000416538 RPL13AP40429 203 aaKnown RBP8.92□□□□□ -0.98
UBXN4-203ENST00000416538 VPREB1P12018 145 aa8.91□□□□□ -0.98
UBXN4-203ENST00000416538 RPL28P46779 137 aaKnown RBP8.91□□□□□ -0.98
UBXN4-203ENST00000416538 ZNF625Q96I27 306 aaPredicted RBP8.91□□□□□ -0.98
UBXN4-203ENST00000416538 SND1-IT1Q9HBX3 110 aa8.91□□□□□ -0.98
UBXN4-203ENST00000416538 ERG28Q9UKR5 140 aa8.91□□□□□ -0.98
UBXN4-203ENST00000416538 IGKV2-28A0A075B6P5 120 aa8.9□□□□□ -0.98
UBXN4-203ENST00000416538 IGKV2D-28P01615 120 aa8.9□□□□□ -0.98
UBXN4-203ENST00000416538 BAGE3Q86Y29 109 aa8.9□□□□□ -0.98
UBXN4-203ENST00000416538 NKAPP1Q8N9T2 125 aa8.9□□□□□ -0.98
UBXN4-203ENST00000416538 ANAPC11Q9NYG5 84 aa8.9□□□□□ -0.98
UBXN4-203ENST00000416538 KRTAP13-2Q52LG2 175 aa8.88□□□□□ -0.99
UBXN4-203ENST00000416538 CHCHD1Q96BP2 118 aaKnown RBP8.88□□□□□ -0.99
UBXN4-203ENST00000416538 TMEM238C9JI98 176 aa8.87□□□□□ -0.99
UBXN4-203ENST00000416538 PRLHP81277 87 aa8.87□□□□□ -0.99
UBXN4-203ENST00000416538 TMEM170BQ5T4T1 132 aa8.87□□□□□ -0.99
UBXN4-203ENST00000416538 CBLN2Q8IUK8 224 aa8.86□□□□□ -0.99
UBXN4-203ENST00000416538 TSPAN13O95857 204 aa8.85□□□□□ -0.99
UBXN4-203ENST00000416538 UBE2AP49459 152 aa8.85□□□□□ -0.99
UBXN4-203ENST00000416538 PRR4Q16378 134 aa8.85□□□□□ -0.99
UBXN4-203ENST00000416538 TMEM126AQ9H061 195 aa8.85□□□□□ -0.99
UBXN4-203ENST00000416538 CHTOPQ9Y3Y2 248 aaKnown RBP8.85□□□□□ -0.99
UBXN4-203ENST00000416538 KRTAP4-8A0A0G2JLE6 195 aa8.84□□□□□ -0.99
UBXN4-203ENST00000416538 TMEM223A0PJW6 202 aa8.84□□□□□ -0.99
UBXN4-203ENST00000416538 M0R378 163 aa8.84□□□□□ -0.99
UBXN4-203ENST00000416538 CRYGAP11844 174 aa8.83□□□□□ -1
UBXN4-203ENST00000416538 COX17Q14061 63 aa8.83□□□□□ -1
UBXN4-203ENST00000416538 TYMSOSQ8TAI1 123 aa8.83□□□□□ -1
UBXN4-203ENST00000416538 IFI27L1Q96BM0 104 aa8.83□□□□□ -1
UBXN4-203ENST00000416538 TRAV12-1A0A0B4J245 112 aa8.82□□□□□ -1
UBXN4-203ENST00000416538 LINC00310P59036 64 aa8.82□□□□□ -1
UBXN4-203ENST00000416538 SFTA2Q6UW10 78 aa8.82□□□□□ -1
UBXN4-203ENST00000416538 A0A0U1RRA0 63 aa8.81□□□□□ -1
UBXN4-203ENST00000416538 HSBP1O75506 76 aa8.81□□□□□ -1
UBXN4-203ENST00000416538 FAM19A1Q7Z5A9 133 aa8.81□□□□□ -1
UBXN4-203ENST00000416538 SLC7A5P1Q8MH63 180 aa8.81□□□□□ -1
UBXN4-203ENST00000416538 FAM19A2Q8N3H0 131 aa8.81□□□□□ -1
UBXN4-203ENST00000416538 TRGC2P03986 189 aa8.8□□□□□ -1
UBXN4-203ENST00000416538 RPL24P83731 157 aaKnown RBP8.79□□□□□ -1
UBXN4-203ENST00000416538 FAM229BQ4G0N7 80 aa8.79□□□□□ -1
UBXN4-203ENST00000416538 SMIM13P0DJ93 91 aa8.78□□□□□ -1
UBXN4-203ENST00000416538 LINC00158P58513 81 aa8.78□□□□□ -1
UBXN4-203ENST00000416538 TSPEAR-AS2P59090 65 aa8.78□□□□□ -1
UBXN4-203ENST00000416538 RETNLBQ9BQ08 111 aa8.77□□□□□ -1.01
UBXN4-203ENST00000416538 C3orf22Q8N5N4 141 aa8.76□□□□□ -1.01
UBXN4-203ENST00000416538 PLEKHB2Q96CS7 222 aa8.76□□□□□ -1.01
UBXN4-203ENST00000416538 LEPROTL1O95214 131 aa8.75□□□□□ -1.01
UBXN4-203ENST00000416538 MIR7-3HGQ8N6C7 128 aa8.75□□□□□ -1.01
UBXN4-203ENST00000416538 LINC00304Q8N9R0 145 aa8.75□□□□□ -1.01
UBXN4-203ENST00000416538 H0Y8G0 127 aa8.74□□□□□ -1.01
UBXN4-203ENST00000416538 H3BS24 57 aa8.74□□□□□ -1.01
UBXN4-203ENST00000416538 NCR3O14931 201 aa8.74□□□□□ -1.01
UBXN4-203ENST00000416538 SERF1AO75920 110 aa8.74□□□□□ -1.01
UBXN4-203ENST00000416538 HIGD2AQ9BW72 106 aa8.74□□□□□ -1.01
UBXN4-203ENST00000416538 COLCA2A8K830 154 aa8.73□□□□□ -1.01
UBXN4-203ENST00000416538 BOD1L2Q8IYS8 172 aa8.73□□□□□ -1.01
UBXN4-203ENST00000416538 NDUFA12Q9UI09 145 aa8.73□□□□□ -1.01
UBXN4-203ENST00000416538 ATP6V1G1O75348 118 aa8.72□□□□□ -1.01
UBXN4-203ENST00000416538 MEIG1Q5JSS6 88 aa8.72□□□□□ -1.01
UBXN4-203ENST00000416538 HSPB8Q9UJY1 196 aa8.72□□□□□ -1.01
UBXN4-203ENST00000416538 MUC2Q02817 5179 aa8.71□□□□□ -1.01
UBXN4-203ENST00000416538 KRTAP4-16G5E9R7 235 aaPredicted RBP8.71□□□□□ -1.02
UBXN4-203ENST00000416538 SPRR1AP35321 89 aa8.71□□□□□ -1.02
UBXN4-203ENST00000416538 SPRR4Q96PI1 79 aa8.71□□□□□ -1.02
UBXN4-203ENST00000416538 IGKV2D-26A0A0A0MRZ7 120 aa8.7□□□□□ -1.02
UBXN4-203ENST00000416538 PRYO14603 147 aa8.7□□□□□ -1.02
UBXN4-203ENST00000416538 FABP4P15090 132 aa8.7□□□□□ -1.02
UBXN4-203ENST00000416538 HERV-K104P63124 156 aa8.7□□□□□ -1.02
UBXN4-203ENST00000416538 DAND5Q8N907 189 aa8.7□□□□□ -1.02
UBXN4-203ENST00000416538 PMCHL2Q9BQD1 86 aa8.7□□□□□ -1.02
UBXN4-203ENST00000416538 TRBV10-3A0A0K0K1G6 114 aa8.69□□□□□ -1.02
UBXN4-203ENST00000416538 LINC00587B1AMM8 73 aa8.69□□□□□ -1.02
UBXN4-203ENST00000416538 PLNP26678 52 aa8.69□□□□□ -1.02
UBXN4-203ENST00000416538 MYMXA0A1B0GTQ4 84 aa8.68□□□□□ -1.02
UBXN4-203ENST00000416538 ANKRD39Q53RE8 183 aa8.68□□□□□ -1.02
UBXN4-203ENST00000416538 KCNQ1DNQ9H478 68 aa8.68□□□□□ -1.02
UBXN4-203ENST00000416538 LEPROTO15243 131 aa8.67□□□□□ -1.02
UBXN4-203ENST00000416538 LINC00337Q8N6G1 96 aa8.67□□□□□ -1.02
UBXN4-203ENST00000416538 DPM2O94777 84 aa8.66□□□□□ -1.02
UBXN4-203ENST00000416538 SMCR5Q8TEV8 140 aa8.66□□□□□ -1.02
UBXN4-203ENST00000416538 MAP1LC3CQ9BXW4 147 aa8.66□□□□□ -1.02
UBXN4-203ENST00000416538 HERVK_113P61574 105 aa8.65□□□□□ -1.02
UBXN4-203ENST00000416538 MUC17Q685J3 4493 aa8.65□□□□□ -1.03
UBXN4-203ENST00000416538 LOC107984156A0A0G2JMH3 177 aa8.64□□□□□ -1.03
UBXN4-203ENST00000416538 J3QQQ9 107 aa8.64□□□□□ -1.03
UBXN4-203ENST00000416538 IGKCP01834 107 aa8.64□□□□□ -1.03
UBXN4-203ENST00000416538 ARL17AQ8IVW1 177 aa8.64□□□□□ -1.03
UBXN4-203ENST00000416538 ERC2-IT1O76042 136 aa8.63□□□□□ -1.03
UBXN4-203ENST00000416538 SOSTDC1Q6X4U4 206 aa8.63□□□□□ -1.03
UBXN4-203ENST00000416538 PPDPFQ9H3Y8 114 aa8.63□□□□□ -1.03
UBXN4-203ENST00000416538 TPRXLQ17RH7 258 aa8.62□□□□□ -1.03
UBXN4-203ENST00000416538 IGLV7-46A0A075B6I9 117 aa8.61□□□□□ -1.03
UBXN4-203ENST00000416538 ETDCA0A1B0GVM5 59 aa8.61□□□□□ -1.03
UBXN4-203ENST00000416538 B5MCH6 92 aa8.61□□□□□ -1.03
UBXN4-203ENST00000416538 LGALS3P17931 250 aaKnown RBP8.61□□□□□ -1.03
UBXN4-203ENST00000416538 NMUP48645 174 aa8.61□□□□□ -1.03
UBXN4-203ENST00000416538 Q9BRP9 147 aa8.61□□□□□ -1.03
UBXN4-203ENST00000416538 HIST1H2BKO60814 126 aa8.6□□□□□ -1.03
UBXN4-203ENST00000416538 HIST1H2BJP06899 126 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms