RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 LINC00308Q8TCZ7 52 aa7.36□□□□□ -1.23
LINC00539-201ENST00000411525 PPDPFQ9H3Y8 114 aa7.36□□□□□ -1.23
LINC00539-201ENST00000411525 SOSTDC1Q6X4U4 206 aa7.35□□□□□ -1.23
LINC00539-201ENST00000411525 NHP2Q9NX24 153 aaKnown RBP7.35□□□□□ -1.23
LINC00539-201ENST00000411525 DYNC1H1Q14204 4646 aaKnown RBP7.35□□□□□ -1.23
LINC00539-201ENST00000411525 A4D1N5 150 aa7.34□□□□□ -1.23
LINC00539-201ENST00000411525 LRCOL1A6NCL2 159 aa7.34□□□□□ -1.23
LINC00539-201ENST00000411525 SLPIP03973 132 aa7.34□□□□□ -1.23
LINC00539-201ENST00000411525 RNF151Q2KHN1 245 aa7.34□□□□□ -1.23
LINC00539-201ENST00000411525 LBHQ53QV2 105 aaPredicted RBP7.34□□□□□ -1.23
LINC00539-201ENST00000411525 COL5A1-AS1Q5SY13 56 aa7.34□□□□□ -1.23
LINC00539-201ENST00000411525 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.33□□□□□ -1.24
LINC00539-201ENST00000411525 A0A1B0GWB2 263 aa7.33□□□□□ -1.24
LINC00539-201ENST00000411525 EIF4EBP3O60516 100 aaPredicted RBP7.33□□□□□ -1.24
LINC00539-201ENST00000411525 Q8N1X5 172 aa7.33□□□□□ -1.24
LINC00539-201ENST00000411525 NDUFC2-KCTD14E9PQ53 114 aa7.32□□□□□ -1.24
LINC00539-201ENST00000411525 K7ERJ3 54 aa7.32□□□□□ -1.24
LINC00539-201ENST00000411525 CNBPP62633 177 aaKnown RBP7.32□□□□□ -1.24
LINC00539-201ENST00000411525 SND1-IT1Q9HBX3 110 aa7.32□□□□□ -1.24
LINC00539-201ENST00000411525 HSPG2P98160 4391 aa7.31□□□□□ -1.24
LINC00539-201ENST00000411525 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.31□□□□□ -1.24
LINC00539-201ENST00000411525 A0A087WTM6 91 aa7.31□□□□□ -1.24
LINC00539-201ENST00000411525 A0A0B4J2C4 111 aa7.31□□□□□ -1.24
LINC00539-201ENST00000411525 LOC107984156A0A0G2JMH3 177 aa7.31□□□□□ -1.24
LINC00539-201ENST00000411525 TLX1NBP0CAT3 122 aa7.31□□□□□ -1.24
LINC00539-201ENST00000411525 ARL17AQ8IVW1 177 aa7.31□□□□□ -1.24
LINC00539-201ENST00000411525 CFC1BP0CG36 223 aa7.3□□□□□ -1.24
LINC00539-201ENST00000411525 CFC1P0CG37 223 aa7.3□□□□□ -1.24
LINC00539-201ENST00000411525 Q8N814 137 aa7.3□□□□□ -1.24
LINC00539-201ENST00000411525 TAX1BP3O14907 124 aa7.29□□□□□ -1.24
LINC00539-201ENST00000411525 RPL18AQ02543 176 aaKnown RBP7.29□□□□□ -1.24
LINC00539-201ENST00000411525 RAB37Q96AX2 223 aa7.29□□□□□ -1.24
LINC00539-201ENST00000411525 LOC107984640A0A0U1RRK4 108 aa7.28□□□□□ -1.24
LINC00539-201ENST00000411525 Q6ZRP5 223 aa7.28□□□□□ -1.24
LINC00539-201ENST00000411525 XAGE1AQ9HD64 81 aa7.28□□□□□ -1.24
LINC00539-201ENST00000411525 NDUFC2O95298 119 aa7.27□□□□□ -1.25
LINC00539-201ENST00000411525 GAGE2EQ4V326 116 aa7.27□□□□□ -1.25
LINC00539-201ENST00000411525 GAGE2DQ9UEU5 116 aa7.27□□□□□ -1.25
LINC00539-201ENST00000411525 PRO1854Q9UHT4 67 aa7.27□□□□□ -1.25
LINC00539-201ENST00000411525 IGKV2-28A0A075B6P5 120 aa7.26□□□□□ -1.25
LINC00539-201ENST00000411525 IGKV2D-28P01615 120 aa7.26□□□□□ -1.25
LINC00539-201ENST00000411525 PGPEP1Q9NXJ5 209 aa7.26□□□□□ -1.25
LINC00539-201ENST00000411525 PKIGQ9Y2B9 76 aa7.26□□□□□ -1.25
LINC00539-201ENST00000411525 RPL13AP40429 203 aaKnown RBP7.25□□□□□ -1.25
LINC00539-201ENST00000411525 KRTAP10-2P60368 255 aa7.25□□□□□ -1.25
LINC00539-201ENST00000411525 Q8NDZ9 215 aa7.25□□□□□ -1.25
LINC00539-201ENST00000411525 LRP1BQ9NZR2 4599 aa7.24□□□□□ -1.25
LINC00539-201ENST00000411525 TRAV13-2A0A0B4J235 113 aa7.24□□□□□ -1.25
LINC00539-201ENST00000411525 C9orf118A6NHY6 69 aa7.24□□□□□ -1.25
LINC00539-201ENST00000411525 EPM2AB3EWF7 344 aa7.24□□□□□ -1.25
LINC00539-201ENST00000411525 TSPAN13O95857 204 aa7.24□□□□□ -1.25
LINC00539-201ENST00000411525 GAGE2BQ13066 116 aa7.24□□□□□ -1.25
LINC00539-201ENST00000411525 C9orf129Q5T035 196 aaKnown RBP7.24□□□□□ -1.25
LINC00539-201ENST00000411525 LINC00337Q8N6G1 96 aa7.24□□□□□ -1.25
LINC00539-201ENST00000411525 C9orf163Q8N9P6 203 aa7.24□□□□□ -1.25
LINC00539-201ENST00000411525 DMBT1Q9UGM3 2413 aaPredicted RBP7.23□□□□□ -1.25
LINC00539-201ENST00000411525 NCR3O14931 201 aa7.23□□□□□ -1.25
LINC00539-201ENST00000411525 VPREB1P12018 145 aa7.23□□□□□ -1.25
LINC00539-201ENST00000411525 Q1RN00 199 aa7.23□□□□□ -1.25
LINC00539-201ENST00000411525 A0A096LNI7 61 aa7.22□□□□□ -1.25
LINC00539-201ENST00000411525 TRBV10-2A0A0K0K1G8 114 aa7.22□□□□□ -1.25
LINC00539-201ENST00000411525 H3BUT2 72 aa7.22□□□□□ -1.25
LINC00539-201ENST00000411525 H7C2G1 150 aa7.22□□□□□ -1.25
LINC00539-201ENST00000411525 NAA38Q9BRA0 125 aaKnown RBP7.22□□□□□ -1.25
LINC00539-201ENST00000411525 PLA2G2DQ9UNK4 145 aa7.22□□□□□ -1.25
LINC00539-201ENST00000411525 PRR3P79522 188 aaKnown RBP7.21□□□□□ -1.26
LINC00539-201ENST00000411525 CBY1Q9Y3M2 126 aa7.21□□□□□ -1.26
LINC00539-201ENST00000411525 APOBP04114 4563 aaKnown RBP7.2□□□□□ -1.26
LINC00539-201ENST00000411525 IGLV5-52A0A0A0MRZ9 124 aa7.2□□□□□ -1.26
LINC00539-201ENST00000411525 IGKV2-24A0A0C4DH68 120 aa7.2□□□□□ -1.26
LINC00539-201ENST00000411525 A0A1B0GV90 55 aa7.2□□□□□ -1.26
LINC00539-201ENST00000411525 OR13C6PQ8NH95 151 aa7.2□□□□□ -1.26
LINC00539-201ENST00000411525 IGLV5-37A0A075B6J1 123 aa7.19□□□□□ -1.26
LINC00539-201ENST00000411525 A0A1W2PPM0 123 aa7.19□□□□□ -1.26
LINC00539-201ENST00000411525 LINC01620Q4KN68 170 aa7.19□□□□□ -1.26
LINC00539-201ENST00000411525 SERTAD4-AS1Q5TG53 156 aa7.19□□□□□ -1.26
LINC00539-201ENST00000411525 DNAH5Q8TE73 4624 aa7.19□□□□□ -1.26
LINC00539-201ENST00000411525 FAM168BA1KXE4 195 aa7.18□□□□□ -1.26
LINC00539-201ENST00000411525 M0R378 163 aa7.18□□□□□ -1.26
LINC00539-201ENST00000411525 INAFM2P0DMQ5 153 aa7.18□□□□□ -1.26
LINC00539-201ENST00000411525 FUSP35637 526 aaKnown RBP eCLIP7.18□□□□□ -1.26
LINC00539-201ENST00000411525 PSMB2P49721 201 aa7.18□□□□□ -1.26
LINC00539-201ENST00000411525 S100A7L2Q5SY68 101 aa7.18□□□□□ -1.26
LINC00539-201ENST00000411525 LYRM7Q5U5X0 104 aa7.18□□□□□ -1.26
LINC00539-201ENST00000411525 SDIM1Q6ZPB5 146 aa7.18□□□□□ -1.26
LINC00539-201ENST00000411525 NKAPP1Q8N9T2 125 aa7.18□□□□□ -1.26
LINC00539-201ENST00000411525 TMEM126AQ9H061 195 aa7.18□□□□□ -1.26
LINC00539-201ENST00000411525 SRRM2Q9UQ35 2752 aaKnown RBP7.17□□□□□ -1.26
LINC00539-201ENST00000411525 TRIAP1O43715 76 aa7.17□□□□□ -1.26
LINC00539-201ENST00000411525 IGLV6-57P01721 117 aa7.17□□□□□ -1.26
LINC00539-201ENST00000411525 CHTF8P0CG12 524 aa7.17□□□□□ -1.26
LINC00539-201ENST00000411525 FABP2P12104 132 aa7.17□□□□□ -1.26
LINC00539-201ENST00000411525 FAM19A5Q7Z5A7 132 aaPredicted RBP7.17□□□□□ -1.26
LINC00539-201ENST00000411525 LINC00474Q9P2X8 69 aa7.17□□□□□ -1.26
LINC00539-201ENST00000411525 TRBV10-3A0A0K0K1G6 114 aa7.16□□□□□ -1.26
LINC00539-201ENST00000411525 SMIM11BQ8TCY0 68 aa7.16□□□□□ -1.26
LINC00539-201ENST00000411525 RPL28P46779 137 aaKnown RBP7.15□□□□□ -1.26
LINC00539-201ENST00000411525 XGP55808 180 aa7.15□□□□□ -1.26
LINC00539-201ENST00000411525 VAMP3Q15836 100 aa7.15□□□□□ -1.26
LINC00539-201ENST00000411525 Q5VSD8 79 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms