RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 LINC00158P58513 81 aa8.44□□□□□ -1.06
CIITA-202ENST00000381835 FAM19A5Q7Z5A7 132 aaPredicted RBP8.44□□□□□ -1.06
CIITA-202ENST00000381835 LINC00337Q8N6G1 96 aa8.44□□□□□ -1.06
CIITA-202ENST00000381835 TENM2Q9NT68 2774 aa8.43□□□□□ -1.06
CIITA-202ENST00000381835 IGKV2-28A0A075B6P5 120 aa8.43□□□□□ -1.06
CIITA-202ENST00000381835 DNAL4O96015 105 aa8.43□□□□□ -1.06
CIITA-202ENST00000381835 IGKV2D-28P01615 120 aa8.43□□□□□ -1.06
CIITA-202ENST00000381835 CCL18P55774 89 aa8.42□□□□□ -1.06
CIITA-202ENST00000381835 SDIM1Q6ZPB5 146 aa8.42□□□□□ -1.06
CIITA-202ENST00000381835 LINC00269Q8N2A0 174 aa8.42□□□□□ -1.06
CIITA-202ENST00000381835 SMIM11BQ8TCY0 68 aa8.42□□□□□ -1.06
CIITA-202ENST00000381835 LINC00588Q9Y4M8 146 aa8.42□□□□□ -1.06
CIITA-202ENST00000381835 DYNC2H1Q8NCM8 4307 aaKnown RBP8.41□□□□□ -1.06
CIITA-202ENST00000381835 NUPR2A6NF83 97 aa8.41□□□□□ -1.06
CIITA-202ENST00000381835 KLK12Q9UKR0 248 aa8.41□□□□□ -1.06
CIITA-202ENST00000381835 STARD9Q9P2P6 4700 aa8.41□□□□□ -1.06
CIITA-202ENST00000381835 A0A087WYN8 130 aa8.41□□□□□ -1.06
CIITA-202ENST00000381835 LINC00959A0A1B0GUT2 108 aa8.4□□□□□ -1.06
CIITA-202ENST00000381835 CXCL5P42830 114 aa8.4□□□□□ -1.06
CIITA-202ENST00000381835 REG3AQ06141 175 aa8.4□□□□□ -1.06
CIITA-202ENST00000381835 APLNQ9ULZ1 77 aa8.4□□□□□ -1.06
CIITA-202ENST00000381835 KLK5Q9Y337 293 aaPredicted RBP8.4□□□□□ -1.06
CIITA-202ENST00000381835 H0YGX0 51 aa8.39□□□□□ -1.07
CIITA-202ENST00000381835 PFN2P35080 140 aa8.39□□□□□ -1.07
CIITA-202ENST00000381835 PLECQ15149 4684 aaKnown RBP8.39□□□□□ -1.07
CIITA-202ENST00000381835 C5orf38Q86SI9 138 aa8.38□□□□□ -1.07
CIITA-202ENST00000381835 IGLV10-54A0A075B6I4 117 aa8.38□□□□□ -1.07
CIITA-202ENST00000381835 IGHV3OR16-9A0A0B4J2B5 98 aa8.38□□□□□ -1.07
CIITA-202ENST00000381835 IBA57-AS1B1ANH7 110 aa8.38□□□□□ -1.07
CIITA-202ENST00000381835 SS18Q15532 418 aa8.38□□□□□ -1.07
CIITA-202ENST00000381835 C9orf153Q5TBE3 101 aa8.38□□□□□ -1.07
CIITA-202ENST00000381835 C3orf22Q8N5N4 141 aa8.38□□□□□ -1.07
CIITA-202ENST00000381835 LOC107984640A0A0U1RRK4 108 aa8.37□□□□□ -1.07
CIITA-202ENST00000381835 XCL1P47992 114 aa8.37□□□□□ -1.07
CIITA-202ENST00000381835 A0A087WZ39 114 aa8.37□□□□□ -1.07
CIITA-202ENST00000381835 LINC01556Q5JQF7 62 aa8.37□□□□□ -1.07
CIITA-202ENST00000381835 C14orf132Q9NPU4 83 aa8.37□□□□□ -1.07
CIITA-202ENST00000381835 UQCRQO14949 82 aa8.36□□□□□ -1.07
CIITA-202ENST00000381835 LECT2O14960 151 aa8.36□□□□□ -1.07
CIITA-202ENST00000381835 C9orf129Q5T035 196 aaKnown RBP8.36□□□□□ -1.07
CIITA-202ENST00000381835 UBE2DNLQ8IWF7 75 aa8.36□□□□□ -1.07
CIITA-202ENST00000381835 ENHOQ6UWT2 76 aa8.36□□□□□ -1.07
CIITA-202ENST00000381835 PRR34Q9NV39 138 aa8.36□□□□□ -1.07
CIITA-202ENST00000381835 DNAH10OSP0CZ25 163 aa8.35□□□□□ -1.07
CIITA-202ENST00000381835 C6orf226Q5I0X4 101 aa8.35□□□□□ -1.07
CIITA-202ENST00000381835 CHCHD10Q8WYQ3 142 aaPredicted RBP8.35□□□□□ -1.07
CIITA-202ENST00000381835 MUC7Q8TAX7 377 aa8.34□□□□□ -1.07
CIITA-202ENST00000381835 UPK3BQ9BT76 320 aa8.34□□□□□ -1.07
CIITA-202ENST00000381835 LINC00526Q96FQ7 95 aa8.34□□□□□ -1.08
CIITA-202ENST00000381835 OBSCN-AS1Q96MR7 158 aa8.33□□□□□ -1.08
CIITA-202ENST00000381835 NCR3O14931 201 aa8.32□□□□□ -1.08
CIITA-202ENST00000381835 SLPIP03973 132 aa8.32□□□□□ -1.08
CIITA-202ENST00000381835 COX7CP15954 63 aa8.32□□□□□ -1.08
CIITA-202ENST00000381835 CD164L2Q6UWJ8 174 aa8.32□□□□□ -1.08
CIITA-202ENST00000381835 WWC2-AS2Q96NR7 200 aa8.32□□□□□ -1.08
CIITA-202ENST00000381835 LINC00846Q9NV44 126 aa8.32□□□□□ -1.08
CIITA-202ENST00000381835 ATOX1O00244 68 aa8.31□□□□□ -1.08
CIITA-202ENST00000381835 IGKV3D-7A0A0C4DH55 119 aa8.31□□□□□ -1.08
CIITA-202ENST00000381835 ORMDL1Q9P0S3 153 aa8.31□□□□□ -1.08
CIITA-202ENST00000381835 HIST1H4AP62805 103 aaKnown RBP8.3□□□□□ -1.08
CIITA-202ENST00000381835 Q6JHZ5 121 aa8.3□□□□□ -1.08
CIITA-202ENST00000381835 C2orf48Q96LS8 159 aa8.29□□□□□ -1.08
CIITA-202ENST00000381835 IGKV2D-24A0A075B6R9 120 aa8.29□□□□□ -1.08
CIITA-202ENST00000381835 C1orf43Q9BWL3 253 aa8.29□□□□□ -1.08
CIITA-202ENST00000381835 RPL18AQ02543 176 aaKnown RBP8.28□□□□□ -1.08
CIITA-202ENST00000381835 Q8IZM0 81 aa8.28□□□□□ -1.08
CIITA-202ENST00000381835 DNAH1Q9P2D7 4330 aa8.27□□□□□ -1.09
CIITA-202ENST00000381835 CRYGAP11844 174 aa8.26□□□□□ -1.09
CIITA-202ENST00000381835 SEC61GP60059 68 aa8.26□□□□□ -1.09
CIITA-202ENST00000381835 PRO0628Q9UI54 55 aa8.26□□□□□ -1.09
CIITA-202ENST00000381835 A0A087WVE0 104 aa8.26□□□□□ -1.09
CIITA-202ENST00000381835 PRR3P79522 188 aaKnown RBP8.26□□□□□ -1.09
CIITA-202ENST00000381835 KRTAP1-5Q9BYS1 174 aa8.26□□□□□ -1.09
CIITA-202ENST00000381835 CCKP06307 115 aa8.25□□□□□ -1.09
CIITA-202ENST00000381835 KRTAP26-1Q6PEX3 210 aa8.25□□□□□ -1.09
CIITA-202ENST00000381835 CASC10Q5T4H9 136 aa8.25□□□□□ -1.09
CIITA-202ENST00000381835 JMJD7-PLA2G4BH0Y9G9 81 aa8.24□□□□□ -1.09
CIITA-202ENST00000381835 LINC01561Q8N1V8 128 aa8.24□□□□□ -1.09
CIITA-202ENST00000381835 Q8N814 137 aa8.24□□□□□ -1.09
CIITA-202ENST00000381835 hADV29S1A0JD25 119 aa8.24□□□□□ -1.09
CIITA-202ENST00000381835 TMEM258P61165 79 aa8.24□□□□□ -1.09
CIITA-202ENST00000381835 LINC00167Q96N53 147 aa8.24□□□□□ -1.09
CIITA-202ENST00000381835 TMEM256-PLSCR3K7ERE1 68 aa8.23□□□□□ -1.09
CIITA-202ENST00000381835 VPS13DQ5THJ4 4388 aa8.23□□□□□ -1.09
CIITA-202ENST00000381835 KMT2AQ03164 3969 aa8.22□□□□□ -1.09
CIITA-202ENST00000381835 NDUFC2O95298 119 aa8.22□□□□□ -1.09
CIITA-202ENST00000381835 SERP2Q8N6R1 65 aa8.22□□□□□ -1.09
CIITA-202ENST00000381835 USP17L23D6RBM5 183 aa8.21□□□□□ -1.09
CIITA-202ENST00000381835 COX17Q14061 63 aa8.21□□□□□ -1.09
CIITA-202ENST00000381835 S100A7L2Q5SY68 101 aa8.21□□□□□ -1.09
CIITA-202ENST00000381835 HRCT1Q6UXD1 115 aa8.21□□□□□ -1.09
CIITA-202ENST00000381835 RMI2Q96E14 147 aa8.21□□□□□ -1.09
CIITA-202ENST00000381835 NBDYA0A0U1RRE5 68 aa8.21□□□□□ -1.1
CIITA-202ENST00000381835 C3orf84H3BNL1 204 aa8.2□□□□□ -1.1
CIITA-202ENST00000381835 M0R2N4 97 aa8.2□□□□□ -1.1
CIITA-202ENST00000381835 SPAG11BQ08648 103 aa8.2□□□□□ -1.1
CIITA-202ENST00000381835 KIAA0087Q14695 138 aa8.2□□□□□ -1.1
CIITA-202ENST00000381835 DPH3Q96FX2 82 aa8.2□□□□□ -1.1
CIITA-202ENST00000381835 DNAH10Q8IVF4 4471 aa8.2□□□□□ -1.1
CIITA-202ENST00000381835 LY6G6CO95867 125 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms