RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 LINC01006Q8NI28 216 aa10.83□□□□□ -0.68
CKAP4-201ENST00000378026 UNQ6190/PRO20217Q6UXQ8 127 aa10.83□□□□□ -0.68
CKAP4-201ENST00000378026 LINC00474Q9P2X8 69 aa10.82□□□□□ -0.68
CKAP4-201ENST00000378026 ZNF462Q96JM2 2506 aa10.82□□□□□ -0.68
CKAP4-201ENST00000378026 KLKP1Q107X0 134 aa10.81□□□□□ -0.68
CKAP4-201ENST00000378026 CD164L2Q6UWJ8 174 aa10.81□□□□□ -0.68
CKAP4-201ENST00000378026 C1orf43Q9BWL3 253 aa10.81□□□□□ -0.68
CKAP4-201ENST00000378026 A0A1B0GUV1 79 aa10.8□□□□□ -0.68
CKAP4-201ENST00000378026 KRTAP10-9P60411 292 aa10.8□□□□□ -0.68
CKAP4-201ENST00000378026 LOC110117498A0A087WWA1 95 aa10.8□□□□□ -0.68
CKAP4-201ENST00000378026 DEFB4AO15263 64 aa10.8□□□□□ -0.68
CKAP4-201ENST00000378026 COX17Q14061 63 aa10.8□□□□□ -0.68
CKAP4-201ENST00000378026 REG3AQ06141 175 aa10.79□□□□□ -0.68
CKAP4-201ENST00000378026 FP248Q71RG6 208 aaPredicted RBP10.79□□□□□ -0.68
CKAP4-201ENST00000378026 C19orf73Q9NVV2 129 aa10.79□□□□□ -0.68
CKAP4-201ENST00000378026 Q8N9L7 120 aa10.78□□□□□ -0.68
CKAP4-201ENST00000378026 XAGE1AQ9HD64 81 aa10.78□□□□□ -0.68
CKAP4-201ENST00000378026 PKIGQ9Y2B9 76 aa10.78□□□□□ -0.68
CKAP4-201ENST00000378026 MUC7Q8TAX7 377 aa10.78□□□□□ -0.68
CKAP4-201ENST00000378026 MRAPQ8TCY5 172 aa10.78□□□□□ -0.68
CKAP4-201ENST00000378026 DNAJC9-AS1A6NH13 148 aa10.76□□□□□ -0.69
CKAP4-201ENST00000378026 EPM2AB3EWF7 344 aa10.76□□□□□ -0.69
CKAP4-201ENST00000378026 SPAG11BQ08648 103 aa10.76□□□□□ -0.69
CKAP4-201ENST00000378026 TRBV7-6A0A0J9YX20 115 aa10.76□□□□□ -0.69
CKAP4-201ENST00000378026 PRO0628Q9UI54 55 aa10.76□□□□□ -0.69
CKAP4-201ENST00000378026 PRO0255Q9UI72 69 aa10.75□□□□□ -0.69
CKAP4-201ENST00000378026 SMIM26A0A096LP01 95 aa10.75□□□□□ -0.69
CKAP4-201ENST00000378026 CYSRT1A8MQ03 144 aa10.74□□□□□ -0.69
CKAP4-201ENST00000378026 ITPR3Q14573 2671 aa10.74□□□□□ -0.69
CKAP4-201ENST00000378026 IGHV4-28A0A0C4DH34 117 aa10.74□□□□□ -0.69
CKAP4-201ENST00000378026 C16orf95Q9H693 158 aa10.73□□□□□ -0.69
CKAP4-201ENST00000378026 MIFP14174 115 aa10.73□□□□□ -0.69
CKAP4-201ENST00000378026 CXCL6P80162 114 aa10.73□□□□□ -0.69
CKAP4-201ENST00000378026 IGLV1-51P01701 117 aa10.73□□□□□ -0.69
CKAP4-201ENST00000378026 CMC4P56277 68 aaPredicted RBP10.73□□□□□ -0.69
CKAP4-201ENST00000378026 MPLKIPQ8TAP9 179 aa10.73□□□□□ -0.69
CKAP4-201ENST00000378026 FLNAP21333 2647 aaKnown RBP10.73□□□□□ -0.69
CKAP4-201ENST00000378026 BCE1O60756 84 aa10.72□□□□□ -0.69
CKAP4-201ENST00000378026 NREPQ16612 68 aa10.72□□□□□ -0.69
CKAP4-201ENST00000378026 HIVEP2P31629 2446 aa10.72□□□□□ -0.69
CKAP4-201ENST00000378026 IGLV6-57P01721 117 aa10.71□□□□□ -0.69
CKAP4-201ENST00000378026 BRK1Q8WUW1 75 aa10.71□□□□□ -0.69
CKAP4-201ENST00000378026 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.71□□□□□ -0.7
CKAP4-201ENST00000378026 DIRC1Q969H9 104 aa10.71□□□□□ -0.7
CKAP4-201ENST00000378026 A0A0U1RQV1 116 aa10.7□□□□□ -0.7
CKAP4-201ENST00000378026 BPY2O14599 106 aa10.7□□□□□ -0.7
CKAP4-201ENST00000378026 TRBV7-4A0A0J9YYF1 115 aa10.7□□□□□ -0.7
CKAP4-201ENST00000378026 DAD1P61803 113 aa10.7□□□□□ -0.7
CKAP4-201ENST00000378026 TMEM254Q8TBM7 123 aa10.69□□□□□ -0.7
CKAP4-201ENST00000378026 PDE6GP18545 87 aa10.69□□□□□ -0.7
CKAP4-201ENST00000378026 HTN3P15516 51 aa10.69□□□□□ -0.7
CKAP4-201ENST00000378026 C9orf66Q5T8R8 295 aa10.69□□□□□ -0.7
CKAP4-201ENST00000378026 FAM229BQ4G0N7 80 aa10.68□□□□□ -0.7
CKAP4-201ENST00000378026 KLK12Q9UKR0 248 aa10.68□□□□□ -0.7
CKAP4-201ENST00000378026 ZNF73O43830 326 aaPredicted RBP10.67□□□□□ -0.7
CKAP4-201ENST00000378026 COX7BP24311 80 aa10.67□□□□□ -0.7
CKAP4-201ENST00000378026 X6R8D5 127 aa10.66□□□□□ -0.7
CKAP4-201ENST00000378026 DEFB113Q30KQ7 82 aa10.65□□□□□ -0.7
CKAP4-201ENST00000378026 C3orf84H3BNL1 204 aa10.64□□□□□ -0.71
CKAP4-201ENST00000378026 NDUFC1O43677 76 aa10.64□□□□□ -0.71
CKAP4-201ENST00000378026 LINC00612Q8N6U2 182 aa10.64□□□□□ -0.71
CKAP4-201ENST00000378026 C6orf48Q9UBA6 75 aa10.64□□□□□ -0.71
CKAP4-201ENST00000378026 DEFB135Q30KP9 77 aa10.63□□□□□ -0.71
CKAP4-201ENST00000378026 HIGD2BQ4VC39 106 aa10.62□□□□□ -0.71
CKAP4-201ENST00000378026 A0A0J9YWU9 116 aa10.62□□□□□ -0.71
CKAP4-201ENST00000378026 IGHV4-30-4P0DP06 118 aa10.62□□□□□ -0.71
CKAP4-201ENST00000378026 VWFP04275 2813 aa10.62□□□□□ -0.71
CKAP4-201ENST00000378026 DEFB105AQ8NG35 78 aa10.61□□□□□ -0.71
CKAP4-201ENST00000378026 HIGD2AQ9BW72 106 aa10.61□□□□□ -0.71
CKAP4-201ENST00000378026 ELOF1P60002 83 aaKnown RBP10.59□□□□□ -0.71
CKAP4-201ENST00000378026 LRCOL1A6NCL2 159 aa10.59□□□□□ -0.71
CKAP4-201ENST00000378026 IGKV4-1P06312 121 aa10.59□□□□□ -0.71
CKAP4-201ENST00000378026 CELA1Q9UNI1 258 aa10.59□□□□□ -0.71
CKAP4-201ENST00000378026 PRYO14603 147 aa10.58□□□□□ -0.72
CKAP4-201ENST00000378026 FUSP35637 526 aaKnown RBP eCLIP10.57□□□□□ -0.72
CKAP4-201ENST00000378026 H3BQ85 93 aa10.56□□□□□ -0.72
CKAP4-201ENST00000378026 ATP5EP56381 51 aaPredicted RBP10.56□□□□□ -0.72
CKAP4-201ENST00000378026 FAM30AQ9NZY2 134 aa10.56□□□□□ -0.72
CKAP4-201ENST00000378026 CAMK2N2Q96S95 79 aa10.55□□□□□ -0.72
CKAP4-201ENST00000378026 NOTCH2Q04721 2471 aa10.54□□□□□ -0.72
CKAP4-201ENST00000378026 OCR1Q9BZK8 76 aa10.54□□□□□ -0.72
CKAP4-201ENST00000378026 USP24Q9UPU5 2620 aa10.53□□□□□ -0.72
CKAP4-201ENST00000378026 UNC79Q9P2D8 2635 aa10.53□□□□□ -0.72
CKAP4-201ENST00000378026 LYRM9A8MSI8 78 aa10.53□□□□□ -0.72
CKAP4-201ENST00000378026 VPREB1P12018 145 aa10.53□□□□□ -0.72
CKAP4-201ENST00000378026 KRTAP1-3Q8IUG1 177 aa10.53□□□□□ -0.72
CKAP4-201ENST00000378026 ESRGQ1W209 222 aa10.52□□□□□ -0.73
CKAP4-201ENST00000378026 ITPR2Q14571 2701 aa10.51□□□□□ -0.73
CKAP4-201ENST00000378026 LELP1Q5T871 98 aa10.5□□□□□ -0.73
CKAP4-201ENST00000378026 LINC00528Q8N1L1 170 aa10.5□□□□□ -0.73
CKAP4-201ENST00000378026 SMIM29Q86T20 159 aa10.5□□□□□ -0.73
CKAP4-201ENST00000378026 C1orf195Q5TG92 126 aa10.49□□□□□ -0.73
CKAP4-201ENST00000378026 Q6ZRU5 148 aa10.49□□□□□ -0.73
CKAP4-201ENST00000378026 Q6ZTC4 211 aa10.49□□□□□ -0.73
CKAP4-201ENST00000378026 M0R378 163 aa10.49□□□□□ -0.73
CKAP4-201ENST00000378026 GVQW2A0A096LPI5 108 aaPredicted RBP10.49□□□□□ -0.73
CKAP4-201ENST00000378026 ERC2-IT1O76042 136 aa10.49□□□□□ -0.73
CKAP4-201ENST00000378026 PRR34Q9NV39 138 aa10.49□□□□□ -0.73
CKAP4-201ENST00000378026 PRB2P02812 416 aaPredicted RBP10.48□□□□□ -0.73
CKAP4-201ENST00000378026 PRR4Q16378 134 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms