RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 UQCR11O14957 56 aa3.31□□□□□ -1.88
SCN1A-202ENST00000375405 Q6ZSA8 131 aa3.31□□□□□ -1.88
SCN1A-202ENST00000375405 EGFEM1PQ0D2K5 195 aa3.31□□□□□ -1.88
SCN1A-202ENST00000375405 MIR22HGQ0VDD5 57 aa3.31□□□□□ -1.88
SCN1A-202ENST00000375405 Q8N2B8 174 aa3.31□□□□□ -1.88
SCN1A-202ENST00000375405 LINC01006Q8NI28 216 aa3.31□□□□□ -1.88
SCN1A-202ENST00000375405 PRO3102Q9H379 93 aa3.31□□□□□ -1.88
SCN1A-202ENST00000375405 C22orf24Q9Y442 160 aa3.3□□□□□ -1.88
SCN1A-202ENST00000375405 PHF5AQ7RTV0 110 aaKnown RBP3.3□□□□□ -1.88
SCN1A-202ENST00000375405 HIGD1BQ9P298 99 aa3.3□□□□□ -1.88
SCN1A-202ENST00000375405 SPTBN4Q9H254 2564 aa3.3□□□□□ -1.88
SCN1A-202ENST00000375405 Q8IZM0 81 aa3.3□□□□□ -1.88
SCN1A-202ENST00000375405 C2orf91Q6ZV80 131 aa3.3□□□□□ -1.88
SCN1A-202ENST00000375405 LINC00304Q8N9R0 145 aa3.3□□□□□ -1.88
SCN1A-202ENST00000375405 IGLV1-50A0A075B6I6 118 aa3.29□□□□□ -1.88
SCN1A-202ENST00000375405 A8MWP4 228 aa3.29□□□□□ -1.88
SCN1A-202ENST00000375405 MRPL34Q9BQ48 92 aaKnown RBP3.29□□□□□ -1.88
SCN1A-202ENST00000375405 MUC7Q8TAX7 377 aa3.29□□□□□ -1.88
SCN1A-202ENST00000375405 ZNF80P51504 273 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-202ENST00000375405 Q6ZSN1 163 aa3.29□□□□□ -1.88
SCN1A-202ENST00000375405 Q8NA96 180 aa3.28□□□□□ -1.88
SCN1A-202ENST00000375405 H3BS24 57 aa3.28□□□□□ -1.88
SCN1A-202ENST00000375405 FAM167A-AS1Q96KT0 104 aa3.28□□□□□ -1.88
SCN1A-202ENST00000375405 K7EQG2 157 aa3.28□□□□□ -1.88
SCN1A-202ENST00000375405 DSCR10P59022 87 aa3.27□□□□□ -1.89
SCN1A-202ENST00000375405 WWC2-AS2Q96NR7 200 aa3.27□□□□□ -1.89
SCN1A-202ENST00000375405 LTBP1Q14766 1721 aa3.27□□□□□ -1.89
SCN1A-202ENST00000375405 HRES1P13985 223 aa3.27□□□□□ -1.89
SCN1A-202ENST00000375405 Q8NBF4 154 aa3.27□□□□□ -1.89
SCN1A-202ENST00000375405 PRORYQ9H606 182 aa3.27□□□□□ -1.89
SCN1A-202ENST00000375405 Q6ZRU5 148 aa3.27□□□□□ -1.89
SCN1A-202ENST00000375405 POLQO75417 2590 aa3.27□□□□□ -1.89
SCN1A-202ENST00000375405 M0QY20 66 aa3.27□□□□□ -1.89
SCN1A-202ENST00000375405 PRR9Q5T870 116 aa3.27□□□□□ -1.89
SCN1A-202ENST00000375405 FHL3Q13643 280 aa3.26□□□□□ -1.89
SCN1A-202ENST00000375405 PRR26Q8N8Z3 221 aa3.26□□□□□ -1.89
SCN1A-202ENST00000375405 PRO0628Q9UI54 55 aa3.26□□□□□ -1.89
SCN1A-202ENST00000375405 U3KQA8 63 aa3.26□□□□□ -1.89
SCN1A-202ENST00000375405 USP9YO00507 2555 aaPredicted RBP3.25□□□□□ -1.89
SCN1A-202ENST00000375405 Q6ZS46 218 aa3.25□□□□□ -1.89
SCN1A-202ENST00000375405 USP24Q9UPU5 2620 aa3.25□□□□□ -1.89
SCN1A-202ENST00000375405 SRCAPQ6ZRS2 3230 aa3.25□□□□□ -1.89
SCN1A-202ENST00000375405 Q8N1X5 172 aa3.24□□□□□ -1.89
SCN1A-202ENST00000375405 CDC42SE2Q9NRR3 84 aa3.24□□□□□ -1.89
SCN1A-202ENST00000375405 PRO0461Q9UI25 63 aa3.24□□□□□ -1.89
SCN1A-202ENST00000375405 LINC00315P59091 139 aa3.24□□□□□ -1.89
SCN1A-202ENST00000375405 THSD7BQ9C0I4 1608 aa3.24□□□□□ -1.89
SCN1A-202ENST00000375405 GAS8-AS1O95177 125 aa3.24□□□□□ -1.89
SCN1A-202ENST00000375405 SPINK7P58062 85 aa3.24□□□□□ -1.89
SCN1A-202ENST00000375405 KIF25-AS1Q9Y6Z4 181 aa3.24□□□□□ -1.89
SCN1A-202ENST00000375405 CRIP1P50238 77 aa3.23□□□□□ -1.89
SCN1A-202ENST00000375405 A8MUN3 132 aa3.23□□□□□ -1.89
SCN1A-202ENST00000375405 ST20-AS1Q8NBB2 130 aa3.23□□□□□ -1.89
SCN1A-202ENST00000375405 IGLV1-40P01703 118 aa3.23□□□□□ -1.89
SCN1A-202ENST00000375405 HELZ2Q9BYK8 2649 aaKnown RBP3.23□□□□□ -1.89
SCN1A-202ENST00000375405 IGLV1-47P01700 117 aa3.22□□□□□ -1.89
SCN1A-202ENST00000375405 WISP2O76076 250 aa3.22□□□□□ -1.89
SCN1A-202ENST00000375405 BAHCC1Q9P281 2608 aa3.22□□□□□ -1.89
SCN1A-202ENST00000375405 LINC00476Q8WZB0 136 aa3.22□□□□□ -1.89
SCN1A-202ENST00000375405 C4orf26Q17RF5 130 aa3.22□□□□□ -1.89
SCN1A-202ENST00000375405 COA5Q86WW8 74 aa3.22□□□□□ -1.89
SCN1A-202ENST00000375405 PSMG3-AS1Q96PY0 264 aa3.22□□□□□ -1.89
SCN1A-202ENST00000375405 FASNP49327 2511 aaKnown RBP3.21□□□□□ -1.89
SCN1A-202ENST00000375405 LOC101927531A0A1B0GV80 90 aa3.21□□□□□ -1.9
SCN1A-202ENST00000375405 KRTAP27-1Q3LI81 207 aa3.21□□□□□ -1.9
SCN1A-202ENST00000375405 DMBT1Q9UGM3 2413 aaPredicted RBP3.21□□□□□ -1.9
SCN1A-202ENST00000375405 ABCA12Q86UK0 2595 aa3.21□□□□□ -1.9
SCN1A-202ENST00000375405 COL4A3Q01955 1670 aa3.21□□□□□ -1.9
SCN1A-202ENST00000375405 Q1T7F1 81 aa3.21□□□□□ -1.9
SCN1A-202ENST00000375405 CHCHD7Q9BUK0 85 aa3.21□□□□□ -1.9
SCN1A-202ENST00000375405 LTBP2Q14767 1821 aa3.21□□□□□ -1.9
SCN1A-202ENST00000375405 PCSK5Q92824 1860 aa3.2□□□□□ -1.9
SCN1A-202ENST00000375405 NBDYA0A0U1RRE5 68 aa3.2□□□□□ -1.9
SCN1A-202ENST00000375405 F8WDY8 70 aa3.2□□□□□ -1.9
SCN1A-202ENST00000375405 LMO4P61968 165 aa3.2□□□□□ -1.9
SCN1A-202ENST00000375405 CPAMD8Q8IZJ3 1885 aa3.2□□□□□ -1.9
SCN1A-202ENST00000375405 SMIM1B2RUZ4 78 aa3.2□□□□□ -1.9
SCN1A-202ENST00000375405 BPTFQ12830 3046 aa3.2□□□□□ -1.9
SCN1A-202ENST00000375405 A0A1W2PNM2 257 aa3.19□□□□□ -1.9
SCN1A-202ENST00000375405 CD164Q04900 197 aa3.19□□□□□ -1.9
SCN1A-202ENST00000375405 STAB1Q9NY15 2570 aa3.19□□□□□ -1.9
SCN1A-202ENST00000375405 Q6ZPA2 131 aa3.19□□□□□ -1.9
SCN1A-202ENST00000375405 BCE1O60756 84 aa3.19□□□□□ -1.9
SCN1A-202ENST00000375405 IGF2RP11717 2491 aa3.19□□□□□ -1.9
SCN1A-202ENST00000375405 R4GN34 69 aa3.18□□□□□ -1.9
SCN1A-202ENST00000375405 P0C880 135 aa3.18□□□□□ -1.9
SCN1A-202ENST00000375405 LINC01561Q8N1V8 128 aa3.18□□□□□ -1.9
SCN1A-202ENST00000375405 ZNF580Q9UK33 172 aa3.18□□□□□ -1.9
SCN1A-202ENST00000375405 IGLV7-46A0A075B6I9 117 aa3.18□□□□□ -1.9
SCN1A-202ENST00000375405 SETD2Q9BYW2 2564 aaPredicted RBP3.17□□□□□ -1.9
SCN1A-202ENST00000375405 LINC00846Q9NV44 126 aa3.16□□□□□ -1.9
SCN1A-202ENST00000375405 ANAPC11Q9NYG5 84 aa3.16□□□□□ -1.9
SCN1A-202ENST00000375405 TSPEAR-AS2P59090 65 aa3.16□□□□□ -1.9
SCN1A-202ENST00000375405 FAM104AQ969W3 186 aa3.16□□□□□ -1.9
SCN1A-202ENST00000375405 PIEZO2Q9H5I5 2752 aa3.16□□□□□ -1.9
SCN1A-202ENST00000375405 C11orf21Q9P2W6 132 aa3.16□□□□□ -1.9
SCN1A-202ENST00000375405 LINC00528Q8N1L1 170 aa3.16□□□□□ -1.9
SCN1A-202ENST00000375405 C11orf72Q8NBR9 251 aa3.16□□□□□ -1.9
SCN1A-202ENST00000375405 H3BPC8 53 aa3.15□□□□□ -1.9
SCN1A-202ENST00000375405 LINC00574Q9H8X3 128 aa3.15□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms