RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 FAM104AQ969W3 186 aa7.04□□□□□ -1.28
SYNE1-203ENST00000354674 NDUFC2-KCTD14E9PQ53 114 aa7.03□□□□□ -1.28
SYNE1-203ENST00000354674 LINC00337Q8N6G1 96 aa7.03□□□□□ -1.28
SYNE1-203ENST00000354674 NOP10Q9NPE3 64 aaKnown RBP7.03□□□□□ -1.28
SYNE1-203ENST00000354674 CRPP02741 224 aa7.03□□□□□ -1.28
SYNE1-203ENST00000354674 MRPS36P82909 103 aaKnown RBP7.03□□□□□ -1.28
SYNE1-203ENST00000354674 SMIM11BQ8TCY0 68 aa7.03□□□□□ -1.28
SYNE1-203ENST00000354674 MIFP14174 115 aa7.02□□□□□ -1.29
SYNE1-203ENST00000354674 Q8NAQ8 132 aa7.02□□□□□ -1.29
SYNE1-203ENST00000354674 DNHD1Q96M86 4753 aa7.02□□□□□ -1.29
SYNE1-203ENST00000354674 TRGV1A0A0A0MS02 117 aa7.02□□□□□ -1.29
SYNE1-203ENST00000354674 K7EIL1 84 aa7.02□□□□□ -1.29
SYNE1-203ENST00000354674 PMAIP1Q13794 54 aa7.01□□□□□ -1.29
SYNE1-203ENST00000354674 IGHV4-28A0A0C4DH34 117 aa7□□□□□ -1.29
SYNE1-203ENST00000354674 TRBV6-5A0A0K0K1A5 114 aa7□□□□□ -1.29
SYNE1-203ENST00000354674 TM2D3Q9BRN9 247 aa7□□□□□ -1.29
SYNE1-203ENST00000354674 LYRM9A8MSI8 78 aa7□□□□□ -1.29
SYNE1-203ENST00000354674 PSPHP1O15172 72 aa7□□□□□ -1.29
SYNE1-203ENST00000354674 IGHV3-53P01767 116 aa7□□□□□ -1.29
SYNE1-203ENST00000354674 LINC00158P58513 81 aa7□□□□□ -1.29
SYNE1-203ENST00000354674 Q6ZSN1 163 aa7□□□□□ -1.29
SYNE1-203ENST00000354674 A8MU10 97 aa6.99□□□□□ -1.29
SYNE1-203ENST00000354674 M0R2N4 97 aa6.99□□□□□ -1.29
SYNE1-203ENST00000354674 PAX4O43316 350 aa6.99□□□□□ -1.29
SYNE1-203ENST00000354674 PRR3P79522 188 aaKnown RBP6.99□□□□□ -1.29
SYNE1-203ENST00000354674 SND1-IT1Q9HBX3 110 aa6.99□□□□□ -1.29
SYNE1-203ENST00000354674 NDUFA1O15239 70 aa6.98□□□□□ -1.29
SYNE1-203ENST00000354674 FAM222AQ5U5X8 452 aa6.97□□□□□ -1.29
SYNE1-203ENST00000354674 NBEAL1Q6ZS30 2694 aa6.97□□□□□ -1.29
SYNE1-203ENST00000354674 NBEAL2Q6ZNJ1 2754 aa6.97□□□□□ -1.29
SYNE1-203ENST00000354674 IGKV2-28A0A075B6P5 120 aa6.96□□□□□ -1.29
SYNE1-203ENST00000354674 TRGV2A0A075B6R0 118 aa6.96□□□□□ -1.29
SYNE1-203ENST00000354674 IGKV2D-28P01615 120 aa6.96□□□□□ -1.29
SYNE1-203ENST00000354674 NANOS2P60321 138 aaKnown RBP6.96□□□□□ -1.29
SYNE1-203ENST00000354674 PRR4Q16378 134 aa6.96□□□□□ -1.3
SYNE1-203ENST00000354674 UBL5Q9BZL1 73 aa6.96□□□□□ -1.3
SYNE1-203ENST00000354674 Q8N9L7 120 aa6.96□□□□□ -1.3
SYNE1-203ENST00000354674 ORMDL1Q9P0S3 153 aa6.96□□□□□ -1.3
SYNE1-203ENST00000354674 TRBV10-1A0A0K0K1A3 114 aa6.95□□□□□ -1.3
SYNE1-203ENST00000354674 DEFB4AO15263 64 aa6.95□□□□□ -1.3
SYNE1-203ENST00000354674 CELA1Q9UNI1 258 aa6.95□□□□□ -1.3
SYNE1-203ENST00000354674 TRBV6-4A0A1B0GX49 114 aa6.95□□□□□ -1.3
SYNE1-203ENST00000354674 K7EQD1 137 aa6.95□□□□□ -1.3
SYNE1-203ENST00000354674 HUWE1Q7Z6Z7 4374 aaKnown RBP6.94□□□□□ -1.3
SYNE1-203ENST00000354674 SPART-AS1P0CW21 52 aa6.94□□□□□ -1.3
SYNE1-203ENST00000354674 DEFB130BP0DP73 79 aa6.94□□□□□ -1.3
SYNE1-203ENST00000354674 DEFB130AP0DP74 79 aa6.94□□□□□ -1.3
SYNE1-203ENST00000354674 TRAV7A0A075B6U4 112 aa6.94□□□□□ -1.3
SYNE1-203ENST00000354674 NOTCH1P46531 2555 aa6.93□□□□□ -1.3
SYNE1-203ENST00000354674 LINC00242Q5T6M2 205 aa6.93□□□□□ -1.3
SYNE1-203ENST00000354674 MGAM2Q2M2H8 2515 aa6.93□□□□□ -1.3
SYNE1-203ENST00000354674 EPM2AB3EWF7 344 aa6.93□□□□□ -1.3
SYNE1-203ENST00000354674 Q8N3U1 123 aa6.93□□□□□ -1.3
SYNE1-203ENST00000354674 CHCHD7Q9BUK0 85 aa6.93□□□□□ -1.3
SYNE1-203ENST00000354674 TRAV13-2A0A0B4J235 113 aa6.92□□□□□ -1.3
SYNE1-203ENST00000354674 SMIM1B2RUZ4 78 aa6.92□□□□□ -1.3
SYNE1-203ENST00000354674 DNAH9Q9NYC9 4486 aa6.92□□□□□ -1.3
SYNE1-203ENST00000354674 TRGV4A0A0C4DH28 118 aa6.92□□□□□ -1.3
SYNE1-203ENST00000354674 LAMTOR3Q9UHA4 124 aa6.91□□□□□ -1.3
SYNE1-203ENST00000354674 CCL18P55774 89 aa6.9□□□□□ -1.3
SYNE1-203ENST00000354674 PRO0255Q9UI72 69 aa6.9□□□□□ -1.3
SYNE1-203ENST00000354674 COX7B2Q8TF08 81 aa6.9□□□□□ -1.31
SYNE1-203ENST00000354674 B9D2Q9BPU9 175 aa6.9□□□□□ -1.31
SYNE1-203ENST00000354674 A0A0J9YWU9 116 aa6.9□□□□□ -1.31
SYNE1-203ENST00000354674 LINC01547P58512 204 aaPredicted RBP6.9□□□□□ -1.31
SYNE1-203ENST00000354674 KLKP1Q107X0 134 aa6.89□□□□□ -1.31
SYNE1-203ENST00000354674 LOC100131303A0A0U1RQF7 123 aa6.89□□□□□ -1.31
SYNE1-203ENST00000354674 C6orf223Q8N319 242 aa6.88□□□□□ -1.31
SYNE1-203ENST00000354674 SPTSSBQ8NFR3 76 aa6.88□□□□□ -1.31
SYNE1-203ENST00000354674 C6orf226Q5I0X4 101 aa6.87□□□□□ -1.31
SYNE1-203ENST00000354674 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-203ENST00000354674 HIGD2AQ9BW72 106 aa6.87□□□□□ -1.31
SYNE1-203ENST00000354674 TENM3Q9P273 2699 aa6.87□□□□□ -1.31
SYNE1-203ENST00000354674 TMEM254Q8TBM7 123 aa6.87□□□□□ -1.31
SYNE1-203ENST00000354674 NTM-AS1Q6ZSK4 140 aa6.86□□□□□ -1.31
SYNE1-203ENST00000354674 OBSCN-AS1Q96MR7 158 aa6.86□□□□□ -1.31
SYNE1-203ENST00000354674 GYPEP15421 78 aa6.86□□□□□ -1.31
SYNE1-203ENST00000354674 ESRGQ1W209 222 aa6.86□□□□□ -1.31
SYNE1-203ENST00000354674 H0YGX0 51 aa6.85□□□□□ -1.31
SYNE1-203ENST00000354674 H3BNG1 76 aa6.85□□□□□ -1.31
SYNE1-203ENST00000354674 FUSP35637 526 aaKnown RBP eCLIP6.85□□□□□ -1.31
SYNE1-203ENST00000354674 NREPQ16612 68 aa6.85□□□□□ -1.31
SYNE1-203ENST00000354674 Q6ZTC4 211 aa6.85□□□□□ -1.31
SYNE1-203ENST00000354674 C11orf45Q8TAV5 145 aa6.85□□□□□ -1.31
SYNE1-203ENST00000354674 Q6ZVQ6 151 aa6.85□□□□□ -1.31
SYNE1-203ENST00000354674 COPS9Q8WXC6 57 aa6.85□□□□□ -1.31
SYNE1-203ENST00000354674 IGLV5-39A0A0G2JS06 123 aa6.84□□□□□ -1.31
SYNE1-203ENST00000354674 MRPL55Q7Z7F7 128 aaKnown RBP6.84□□□□□ -1.31
SYNE1-203ENST00000354674 COL7A1Q02388 2944 aa6.84□□□□□ -1.31
SYNE1-203ENST00000354674 MEGF8Q7Z7M0 2845 aa6.84□□□□□ -1.31
SYNE1-203ENST00000354674 PRKDCP78527 4128 aaKnown RBP6.83□□□□□ -1.32
SYNE1-203ENST00000354674 TRBV6-8A0A0A6YYG3 113 aa6.82□□□□□ -1.32
SYNE1-203ENST00000354674 HTN3P15516 51 aa6.82□□□□□ -1.32
SYNE1-203ENST00000354674 CLPSL2Q6UWE3 100 aa6.82□□□□□ -1.32
SYNE1-203ENST00000354674 A0A096LPF7 62 aa6.82□□□□□ -1.32
SYNE1-203ENST00000354674 Q8N814 137 aa6.82□□□□□ -1.32
SYNE1-203ENST00000354674 BPY2O14599 106 aa6.81□□□□□ -1.32
SYNE1-203ENST00000354674 JMJD7-PLA2G4BH0Y9G9 81 aa6.81□□□□□ -1.32
SYNE1-203ENST00000354674 DEFB131BA0A096LNP1 70 aa6.81□□□□□ -1.32
SYNE1-203ENST00000354674 TRBV7-4A0A0J9YYF1 115 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms