RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 FAM236CP0DP71 79 aa8.34□□□□□ -1.07
USP1-201ENST00000339950 CELA1Q9UNI1 258 aa8.34□□□□□ -1.07
USP1-201ENST00000339950 DPH3Q96FX2 82 aa8.33□□□□□ -1.08
USP1-201ENST00000339950 C4orf26Q17RF5 130 aa8.33□□□□□ -1.08
USP1-201ENST00000339950 CAMK2N2Q96S95 79 aa8.33□□□□□ -1.08
USP1-201ENST00000339950 OTOGQ6ZRI0 2925 aa8.33□□□□□ -1.08
USP1-201ENST00000339950 IGLV5-39A0A0G2JS06 123 aa8.32□□□□□ -1.08
USP1-201ENST00000339950 PRR4Q16378 134 aa8.32□□□□□ -1.08
USP1-201ENST00000339950 IGHV3OR16-9A0A0B4J2B5 98 aa8.32□□□□□ -1.08
USP1-201ENST00000339950 JMJD7-PLA2G4BH0Y9G9 81 aa8.32□□□□□ -1.08
USP1-201ENST00000339950 FSHBP01225 129 aa8.32□□□□□ -1.08
USP1-201ENST00000339950 SPART-AS1P0CW21 52 aa8.32□□□□□ -1.08
USP1-201ENST00000339950 C10orf25Q5T742 122 aa8.31□□□□□ -1.08
USP1-201ENST00000339950 IGKV2-28A0A075B6P5 120 aa8.31□□□□□ -1.08
USP1-201ENST00000339950 TMEM256-PLSCR3K7ERE1 68 aa8.31□□□□□ -1.08
USP1-201ENST00000339950 IGKV2D-28P01615 120 aa8.31□□□□□ -1.08
USP1-201ENST00000339950 APOC4P55056 127 aa8.31□□□□□ -1.08
USP1-201ENST00000339950 TMEM258P61165 79 aa8.3□□□□□ -1.08
USP1-201ENST00000339950 LRRC75A-AS1Q8N1F1 130 aa8.3□□□□□ -1.08
USP1-201ENST00000339950 IBA57-AS1B1ANH7 110 aa8.3□□□□□ -1.08
USP1-201ENST00000339950 SMCR5Q8TEV8 140 aa8.29□□□□□ -1.08
USP1-201ENST00000339950 A0A087WZ39 114 aa8.29□□□□□ -1.08
USP1-201ENST00000339950 CYSRT1A8MQ03 144 aa8.29□□□□□ -1.08
USP1-201ENST00000339950 C9orf66Q5T8R8 295 aa8.29□□□□□ -1.08
USP1-201ENST00000339950 Q6ZQY7 126 aa8.29□□□□□ -1.08
USP1-201ENST00000339950 PKD1L1Q8TDX9 2849 aa8.28□□□□□ -1.08
USP1-201ENST00000339950 IGLV5-45A0A087WSX0 123 aa8.28□□□□□ -1.08
USP1-201ENST00000339950 TRBV7-7A0A0K0K1E9 115 aa8.28□□□□□ -1.08
USP1-201ENST00000339950 KRTAP1-3Q8IUG1 177 aa8.27□□□□□ -1.09
USP1-201ENST00000339950 NREPQ16612 68 aa8.27□□□□□ -1.09
USP1-201ENST00000339950 PLAC8L1A1L4L8 177 aa8.27□□□□□ -1.09
USP1-201ENST00000339950 F8WEM9 126 aa8.27□□□□□ -1.09
USP1-201ENST00000339950 C3orf84H3BNL1 204 aa8.27□□□□□ -1.09
USP1-201ENST00000339950 IGHV4-30-4P0DP06 118 aa8.27□□□□□ -1.09
USP1-201ENST00000339950 KRTAP10-3P60369 221 aa8.26□□□□□ -1.09
USP1-201ENST00000339950 WFDC10BQ8IUB3 73 aa8.25□□□□□ -1.09
USP1-201ENST00000339950 KMT2BQ9UMN6 2715 aaPredicted RBP8.24□□□□□ -1.09
USP1-201ENST00000339950 RPL28P46779 137 aaKnown RBP8.24□□□□□ -1.09
USP1-201ENST00000339950 ZNF469Q96JG9 3925 aaPredicted RBP8.24□□□□□ -1.09
USP1-201ENST00000339950 CD164L2Q6UWJ8 174 aa8.24□□□□□ -1.09
USP1-201ENST00000339950 NANOS2P60321 138 aaKnown RBP8.24□□□□□ -1.09
USP1-201ENST00000339950 RMI2Q96E14 147 aa8.23□□□□□ -1.09
USP1-201ENST00000339950 X6R8D5 127 aa8.23□□□□□ -1.09
USP1-201ENST00000339950 RPL37AP8A6NKH3 93 aa8.23□□□□□ -1.09
USP1-201ENST00000339950 Q6ZTC4 211 aa8.23□□□□□ -1.09
USP1-201ENST00000339950 C19orf73Q9NVV2 129 aa8.23□□□□□ -1.09
USP1-201ENST00000339950 TRBV10-3A0A0K0K1G6 114 aa8.22□□□□□ -1.09
USP1-201ENST00000339950 KPRPQ5T749 579 aaPredicted RBP8.22□□□□□ -1.09
USP1-201ENST00000339950 NKAPP1Q8N9T2 125 aa8.22□□□□□ -1.09
USP1-201ENST00000339950 CSNK1G2-AS1Q8NCQ2 148 aa8.21□□□□□ -1.09
USP1-201ENST00000339950 IGKV2-24A0A0C4DH68 120 aa8.21□□□□□ -1.09
USP1-201ENST00000339950 Q6JHZ5 121 aa8.21□□□□□ -1.09
USP1-201ENST00000339950 Q8N9L7 120 aa8.21□□□□□ -1.1
USP1-201ENST00000339950 A0A096LNI7 61 aa8.2□□□□□ -1.1
USP1-201ENST00000339950 TENM3Q9P273 2699 aa8.2□□□□□ -1.1
USP1-201ENST00000339950 NDUFC2O95298 119 aa8.19□□□□□ -1.1
USP1-201ENST00000339950 CCKP06307 115 aa8.19□□□□□ -1.1
USP1-201ENST00000339950 DIRC1Q969H9 104 aa8.19□□□□□ -1.1
USP1-201ENST00000339950 Q8IZM0 81 aa8.19□□□□□ -1.1
USP1-201ENST00000339950 Q8N814 137 aa8.18□□□□□ -1.1
USP1-201ENST00000339950 STAB2Q8WWQ8 2551 aa8.18□□□□□ -1.1
USP1-201ENST00000339950 SPTSSBQ8NFR3 76 aa8.18□□□□□ -1.1
USP1-201ENST00000339950 LYRM9A8MSI8 78 aa8.17□□□□□ -1.1
USP1-201ENST00000339950 BPY2O14599 106 aa8.17□□□□□ -1.1
USP1-201ENST00000339950 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.17□□□□□ -1.1
USP1-201ENST00000339950 A0A0J9YWU9 116 aa8.17□□□□□ -1.1
USP1-201ENST00000339950 DEFB131BA0A096LNP1 70 aa8.16□□□□□ -1.1
USP1-201ENST00000339950 CRYGAP11844 174 aa8.16□□□□□ -1.1
USP1-201ENST00000339950 KRTAP1-1Q07627 177 aa8.16□□□□□ -1.1
USP1-201ENST00000339950 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.15□□□□□ -1.1
USP1-201ENST00000339950 PSCAO43653 123 aa8.15□□□□□ -1.1
USP1-201ENST00000339950 FUSP35637 526 aaKnown RBP eCLIP8.15□□□□□ -1.1
USP1-201ENST00000339950 TRRAPQ9Y4A5 3859 aa8.15□□□□□ -1.1
USP1-201ENST00000339950 NDUFC2-KCTD14E9PQ53 114 aa8.15□□□□□ -1.11
USP1-201ENST00000339950 UBE2BP63146 152 aa8.15□□□□□ -1.11
USP1-201ENST00000339950 COX7BP24311 80 aa8.14□□□□□ -1.11
USP1-201ENST00000339950 C11orf45Q8TAV5 145 aa8.13□□□□□ -1.11
USP1-201ENST00000339950 IL17DQ8TAD2 202 aa8.13□□□□□ -1.11
USP1-201ENST00000339950 M0R2N4 97 aa8.12□□□□□ -1.11
USP1-201ENST00000339950 LELP1Q5T871 98 aa8.12□□□□□ -1.11
USP1-201ENST00000339950 Q6ZRU5 148 aa8.12□□□□□ -1.11
USP1-201ENST00000339950 MIFP14174 115 aa8.12□□□□□ -1.11
USP1-201ENST00000339950 LINC01561Q8N1V8 128 aa8.12□□□□□ -1.11
USP1-201ENST00000339950 FAM30AQ9NZY2 134 aa8.12□□□□□ -1.11
USP1-201ENST00000339950 V9GYY9 64 aa8.12□□□□□ -1.11
USP1-201ENST00000339950 C1orf195Q5TG92 126 aa8.12□□□□□ -1.11
USP1-201ENST00000339950 ATP5EP2Q5VTU8 51 aa8.12□□□□□ -1.11
USP1-201ENST00000339950 LYPD5Q6UWN5 251 aa8.12□□□□□ -1.11
USP1-201ENST00000339950 UBE2DNLQ8IWF7 75 aa8.12□□□□□ -1.11
USP1-201ENST00000339950 Q8NDZ9 215 aa8.12□□□□□ -1.11
USP1-201ENST00000339950 C16orf95Q9H693 158 aa8.11□□□□□ -1.11
USP1-201ENST00000339950 PSPHP1O15172 72 aa8.11□□□□□ -1.11
USP1-201ENST00000339950 ZNF73O43830 326 aaPredicted RBP8.11□□□□□ -1.11
USP1-201ENST00000339950 SMIM26A0A096LP01 95 aa8.1□□□□□ -1.11
USP1-201ENST00000339950 A0A1B0GUV1 79 aa8.1□□□□□ -1.11
USP1-201ENST00000339950 C6orf48Q9UBA6 75 aa8.1□□□□□ -1.11
USP1-201ENST00000339950 Q6ZVQ6 151 aa8.1□□□□□ -1.11
USP1-201ENST00000339950 TRAV7A0A075B6U4 112 aa8.09□□□□□ -1.11
USP1-201ENST00000339950 ETDCA0A1B0GVM5 59 aa8.09□□□□□ -1.11
USP1-201ENST00000339950 DEFB116Q30KQ4 102 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms