RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 UNQ6190/PRO20217Q6UXQ8 127 aa10.25□□□□□ -0.77
LIMS1-202ENST00000338045 KRTAP1-5Q9BYS1 174 aa10.25□□□□□ -0.77
LIMS1-202ENST00000338045 PRO0461Q9UI25 63 aa10.24□□□□□ -0.77
LIMS1-202ENST00000338045 LYSTQ99698 3801 aa10.24□□□□□ -0.77
LIMS1-202ENST00000338045 ZNF561-AS1K7EIQ3 104 aa10.23□□□□□ -0.77
LIMS1-202ENST00000338045 HIGD2BQ4VC39 106 aa10.23□□□□□ -0.77
LIMS1-202ENST00000338045 C2orf48Q96LS8 159 aa10.23□□□□□ -0.77
LIMS1-202ENST00000338045 LOC107984156A0A0G2JMH3 177 aa10.23□□□□□ -0.77
LIMS1-202ENST00000338045 ARL17AQ8IVW1 177 aa10.23□□□□□ -0.77
LIMS1-202ENST00000338045 MUC7Q8TAX7 377 aa10.23□□□□□ -0.77
LIMS1-202ENST00000338045 C9orf116Q5BN46 136 aaPredicted RBP10.22□□□□□ -0.77
LIMS1-202ENST00000338045 PPDPFLQ8WWR9 84 aa10.22□□□□□ -0.77
LIMS1-202ENST00000338045 PRO0628Q9UI54 55 aa10.22□□□□□ -0.77
LIMS1-202ENST00000338045 C6orf48Q9UBA6 75 aa10.21□□□□□ -0.77
LIMS1-202ENST00000338045 V9GYY9 64 aa10.21□□□□□ -0.77
LIMS1-202ENST00000338045 VPS13DQ5THJ4 4388 aa10.21□□□□□ -0.78
LIMS1-202ENST00000338045 TRBV30A0A0K0K1B3 111 aa10.2□□□□□ -0.78
LIMS1-202ENST00000338045 CASC10Q5T4H9 136 aa10.2□□□□□ -0.78
LIMS1-202ENST00000338045 CAMK2N2Q96S95 79 aa10.2□□□□□ -0.78
LIMS1-202ENST00000338045 SND1-IT1Q9HBX3 110 aa10.2□□□□□ -0.78
LIMS1-202ENST00000338045 SNCGO76070 127 aa10.19□□□□□ -0.78
LIMS1-202ENST00000338045 Q6ZRU5 148 aa10.18□□□□□ -0.78
LIMS1-202ENST00000338045 TENM2Q9NT68 2774 aa10.18□□□□□ -0.78
LIMS1-202ENST00000338045 USP17L23D6RBM5 183 aa10.17□□□□□ -0.78
LIMS1-202ENST00000338045 NBDYA0A0U1RRE5 68 aa10.17□□□□□ -0.78
LIMS1-202ENST00000338045 IGKV2-28A0A075B6P5 120 aa10.16□□□□□ -0.78
LIMS1-202ENST00000338045 IGKV2D-28P01615 120 aa10.16□□□□□ -0.78
LIMS1-202ENST00000338045 TRBV20-1A0A075B6N2 111 aa10.15□□□□□ -0.78
LIMS1-202ENST00000338045 RPL13AP40429 203 aaKnown RBP10.15□□□□□ -0.78
LIMS1-202ENST00000338045 SYCNQ0VAF6 134 aa10.15□□□□□ -0.79
LIMS1-202ENST00000338045 TRAV13-2A0A0B4J235 113 aa10.14□□□□□ -0.79
LIMS1-202ENST00000338045 LOC107984640A0A0U1RRK4 108 aa10.14□□□□□ -0.79
LIMS1-202ENST00000338045 H7C2G1 150 aa10.14□□□□□ -0.79
LIMS1-202ENST00000338045 NDUFC2O95298 119 aa10.14□□□□□ -0.79
LIMS1-202ENST00000338045 WWC2-AS2Q96NR7 200 aa10.14□□□□□ -0.79
LIMS1-202ENST00000338045 LYRM7Q5U5X0 104 aa10.13□□□□□ -0.79
LIMS1-202ENST00000338045 LINC00337Q8N6G1 96 aa10.13□□□□□ -0.79
LIMS1-202ENST00000338045 DNAH10Q8IVF4 4471 aa10.13□□□□□ -0.79
LIMS1-202ENST00000338045 SLPIP03973 132 aa10.13□□□□□ -0.79
LIMS1-202ENST00000338045 Q1RN00 199 aa10.13□□□□□ -0.79
LIMS1-202ENST00000338045 TEN1Q86WV5 123 aa10.12□□□□□ -0.79
LIMS1-202ENST00000338045 NDUFC2-KCTD14E9PQ53 114 aa10.11□□□□□ -0.79
LIMS1-202ENST00000338045 CARD19Q96LW7 228 aa10.11□□□□□ -0.79
LIMS1-202ENST00000338045 TRIAP1O43715 76 aa10.1□□□□□ -0.79
LIMS1-202ENST00000338045 PSMB2P49721 201 aa10.1□□□□□ -0.79
LIMS1-202ENST00000338045 LECT2O14960 151 aa10.1□□□□□ -0.79
LIMS1-202ENST00000338045 Q8NDZ9 215 aa10.1□□□□□ -0.79
LIMS1-202ENST00000338045 PSCAO43653 123 aa10.09□□□□□ -0.79
LIMS1-202ENST00000338045 TLX1NBP0CAT3 122 aa10.08□□□□□ -0.8
LIMS1-202ENST00000338045 Q6ZRN7 208 aaPredicted RBP10.08□□□□□ -0.8
LIMS1-202ENST00000338045 SCGB1C2P0DMR2 95 aa10.08□□□□□ -0.8
LIMS1-202ENST00000338045 TGP01266 2768 aa10.08□□□□□ -0.8
LIMS1-202ENST00000338045 Q6ZRP5 223 aa10.07□□□□□ -0.8
LIMS1-202ENST00000338045 XAGE1AQ9HD64 81 aa10.07□□□□□ -0.8
LIMS1-202ENST00000338045 TCL1BO95988 128 aa10.06□□□□□ -0.8
LIMS1-202ENST00000338045 PRR3P79522 188 aaKnown RBP10.06□□□□□ -0.8
LIMS1-202ENST00000338045 C9orf153Q5TBE3 101 aa10.06□□□□□ -0.8
LIMS1-202ENST00000338045 C3orf22Q8N5N4 141 aa10.06□□□□□ -0.8
LIMS1-202ENST00000338045 UQCRQO14949 82 aa10.06□□□□□ -0.8
LIMS1-202ENST00000338045 COX6CP09669 75 aa10.06□□□□□ -0.8
LIMS1-202ENST00000338045 RPL28P46779 137 aaKnown RBP10.06□□□□□ -0.8
LIMS1-202ENST00000338045 Q6ZR54 194 aa10.06□□□□□ -0.8
LIMS1-202ENST00000338045 LRCOL1A6NCL2 159 aa10.04□□□□□ -0.8
LIMS1-202ENST00000338045 CNBPP62633 177 aaKnown RBP10.04□□□□□ -0.8
LIMS1-202ENST00000338045 C14orf177Q52M58 125 aa10.04□□□□□ -0.8
LIMS1-202ENST00000338045 TRBV10-2A0A0K0K1G8 114 aa10.04□□□□□ -0.8
LIMS1-202ENST00000338045 SMIM11BQ8TCY0 68 aa10.04□□□□□ -0.8
LIMS1-202ENST00000338045 M0R2N4 97 aa10.03□□□□□ -0.8
LIMS1-202ENST00000338045 C3orf84H3BNL1 204 aa10.02□□□□□ -0.8
LIMS1-202ENST00000338045 NCR3O14931 201 aa10.02□□□□□ -0.8
LIMS1-202ENST00000338045 VPREB1P12018 145 aa10.02□□□□□ -0.8
LIMS1-202ENST00000338045 SMCPP49901 116 aaPredicted RBP10.02□□□□□ -0.81
LIMS1-202ENST00000338045 C9orf129Q5T035 196 aaKnown RBP10.02□□□□□ -0.81
LIMS1-202ENST00000338045 HRCT1Q6UXD1 115 aa10.01□□□□□ -0.81
LIMS1-202ENST00000338045 RPL18AQ02543 176 aaKnown RBP10□□□□□ -0.81
LIMS1-202ENST00000338045 ATXN8Q156A1 80 aa10□□□□□ -0.81
LIMS1-202ENST00000338045 Q5XG85 94 aa10□□□□□ -0.81
LIMS1-202ENST00000338045 LINC00476Q8WZB0 136 aa10□□□□□ -0.81
LIMS1-202ENST00000338045 KMT2AQ03164 3969 aa10□□□□□ -0.81
LIMS1-202ENST00000338045 TMEM258P61165 79 aa10□□□□□ -0.81
LIMS1-202ENST00000338045 TRBV7-7A0A0K0K1E9 115 aa9.99□□□□□ -0.81
LIMS1-202ENST00000338045 IGLV6-57P01721 117 aa9.99□□□□□ -0.81
LIMS1-202ENST00000338045 CLEC2BQ92478 149 aa9.99□□□□□ -0.81
LIMS1-202ENST00000338045 LST1O00453 97 aa9.98□□□□□ -0.81
LIMS1-202ENST00000338045 LY6G6CO95867 125 aa9.98□□□□□ -0.81
LIMS1-202ENST00000338045 IMUPQ9GZP8 106 aa9.98□□□□□ -0.81
LIMS1-202ENST00000338045 PLA2G2DQ9UNK4 145 aa9.98□□□□□ -0.81
LIMS1-202ENST00000338045 DNAH6Q9C0G6 4158 aa9.98□□□□□ -0.81
LIMS1-202ENST00000338045 S100A7L2Q5SY68 101 aa9.98□□□□□ -0.81
LIMS1-202ENST00000338045 CRYGAP11844 174 aa9.97□□□□□ -0.81
LIMS1-202ENST00000338045 C4orf26Q17RF5 130 aa9.97□□□□□ -0.81
LIMS1-202ENST00000338045 DNAH2Q9P225 4427 aa9.96□□□□□ -0.81
LIMS1-202ENST00000338045 C1orf195Q5TG92 126 aa9.96□□□□□ -0.81
LIMS1-202ENST00000338045 GAGE2AQ6NT46 116 aa9.96□□□□□ -0.81
LIMS1-202ENST00000338045 ALMS1Q8TCU4 4167 aa9.96□□□□□ -0.82
LIMS1-202ENST00000338045 M0R378 163 aa9.96□□□□□ -0.82
LIMS1-202ENST00000338045 LINC01620Q4KN68 170 aa9.96□□□□□ -0.82
LIMS1-202ENST00000338045 LINC00336Q6ZUF6 198 aa9.96□□□□□ -0.82
LIMS1-202ENST00000338045 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.95□□□□□ -0.82
LIMS1-202ENST00000338045 H0YGX0 51 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms